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- Update The Glorious Glasgow Haskell Compiler to version 7.4.2 - Update Haskell Platform to version 2012.4.0.0 - Update Gtk2Hs to 0.12.4 - Transfer maintainership of math/hs-math-functions to haskell@ [1] Please note that port revisions for all the Haskell ports without version changes are bumped. Some further highlights of the update: - Trim Makefile headers - Enable dynamic libraries and dynamic linking by default - Enable bootstrapping by versions of GHC and HsColour already installed - Use GCC and binutils from ports New ports (32): devel/hs-List 0.5.1 devel/hs-ReadArgs 1.2.1 devel/hs-SafeSemaphore 0.9.0 devel/hs-activehs-base 0.3.0.2 devel/hs-async 2.0.1.3 devel/hs-basic-prelude 0.3.1.0 devel/hs-classy-prelude 0.4.1 devel/hs-classy-prelude-conduit 0.4.1 devel/hs-data-pprint 0.2.1.4 devel/hs-date-cache 0.3.0 devel/hs-fsnotify 0.0.4 devel/hs-hinotify 0.3.5 devel/hs-hspec-expectations 0.3.0.3 devel/hs-kqueue 0.1.2.4 devel/hs-monad-logger 0.2.3 devel/hs-optparse-applicative 0.4.2 devel/hs-project-template 0.1.0.1 devel/hs-setenv 0.1.0 devel/hs-simple-reflect 0.2 devel/hs-threads 0.5.0.1 devel/hs-time-compat 0.1.0.2 devel/hs-unix-time 0.1.4 devel/hs-word8 0.0.2 graphics/hs-dia-base 0.1.1.2 graphics/hs-dia-functions 0.2.1.3 mail/hs-mime-types 0.1.0.0 net/hs-network-info 0.2.0.3 net/hs-network-multicast 0.0.7 security/hs-cipher-aes 0.1.5 textproc/hs-hexpat 0.20.3 www/hs-activehs 0.3.0.1 www/hs-http-reverse-proxy 0.1.0.6 Updated ports (211): archivers/hs-tar 0.4.0.0_1 --> 0.4.0.1 archivers/hs-zip-archive 0.1.1.8_1 --> 0.1.2.1 archivers/hs-zlib 0.5.3.3_1 --> 0.5.4.0 archivers/hs-zlib-bindings 0.1.0.1_1 --> 0.1.1.2 archivers/hs-zlib-conduit 0.4.0.2 --> 0.5.0.3 archivers/hs-zlib-enum 0.2.2.1_1 --> 0.2.3 audio/hs-libmpd 0.8.0_1 --> 0.8.0.1 benchmarks/hs-criterion 0.6.0.1_2 --> 0.6.2.0 converters/hs-dataenc 0.14.0.3_2 --> 0.14.0.4 converters/hs-json 0.5_1 --> 0.7 databases/hs-persistent 0.9.0.4_1 --> 1.0.2.2 databases/hs-persistent-sqlite 0.9.0.2_1 --> 1.0.1 databases/hs-persistent-template 0.9.0.2_1 --> 1.0.0.2 devel/hs-Boolean 0.0.1_5 --> 0.1.1 devel/hs-DeepArrow 0.3.5_2 --> 0.3.7 devel/hs-HUnit 1.2.4.2_2 --> 1.2.5.1 devel/hs-MemoTrie 0.5_1 --> 0.6.1 devel/hs-MissingH 1.1.1.0_2 --> 1.2.0.0 devel/hs-MonadCatchIO-mtl 0.3.0.4_3 --> 0.3.0.5 devel/hs-QuickCheck 2.4.2_1 --> 2.5.1.1 devel/hs-Stream 0.4.6_2 --> 0.4.6.1 devel/hs-TypeCompose 0.9.1_2 --> 0.9.7 devel/hs-abstract-deque 0.1.5_1 --> 0.1.6 devel/hs-alex 3.0.1_1 --> 3.0.2 devel/hs-arrows 0.4.4.0_4 --> 0.4.4.1 devel/hs-asn1-data 0.6.1.3_1 --> 0.7.1 devel/hs-base-unicode-symbols 0.2.2.3_2 --> 0.2.2.4 devel/hs-base64-bytestring 0.1.2.0 --> 1.0.0.0 devel/hs-blaze-builder-conduit 0.4.0.2_1 --> 0.5.0.3 devel/hs-blaze-builder-enumerator 0.2.0.4_1 --> 0.2.0.5 devel/hs-blaze-textual 0.2.0.6_2 --> 0.2.0.8 devel/hs-bytestring-nums 0.3.5_2 --> 0.3.6 devel/hs-c2hs 0.16.3_3 --> 0.16.4 devel/hs-cmdargs 0.9.5_1 --> 0.10.1 devel/hs-conduit 0.4.2_1 --> 0.5.5 devel/hs-configurator 0.2.0.0_2 --> 0.2.0.1 devel/hs-cpphs 1.14 --> 1.15 devel/hs-darcs 2.8.1_1 --> 2.8.3 devel/hs-data-default 0.4.0_1 --> 0.5.0 devel/hs-directory-tree 0.10.1 --> 0.11.0 devel/hs-edit-distance 0.2.1_1 --> 0.2.1.1 devel/hs-fast-logger 0.0.2_2 --> 0.3.1 devel/hs-file-embed 0.0.4.4_1 --> 0.0.4.6 devel/hs-filemanip 0.3.5.2_6 --> 0.3.6.2 devel/hs-filestore 0.5_1 --> 0.5.0.1 devel/hs-filesystem-conduit 0.4.0_1 --> 0.5.0.2 devel/hs-gconf 0.12.1_3 --> 0.12.1.1 devel/hs-ghc-events 0.4.0.0_2 --> 0.4.2.0 devel/hs-ghc-mtl 1.0.1.1_2 --> 1.0.1.2 devel/hs-gio 0.12.3_1 --> 0.12.4 devel/hs-git-annex 3.20120807 --> 3.20121211 devel/hs-glib 0.12.3.1_1 --> 0.12.4 devel/hs-gtk2hs-buildtools 0.12.3.1_1 --> 0.12.4 devel/hs-haddock 2.10.0_1 --> 2.11.0 devel/hs-happy 1.18.9_1 --> 1.18.10 devel/hs-hashable 1.1.2.3_1 --> 1.1.2.5 devel/hs-hashed-storage 0.5.9_2 --> 0.5.10 devel/hs-hashtables 1.0.1.6_1 --> 1.0.1.8 devel/hs-haskell-src-exts 1.13.3_1 --> 1.13.5 devel/hs-hastache 0.4.1 --> 0.4.2 devel/hs-hint 0.3.3.4_1 --> 0.3.3.5 devel/hs-hlint 1.8.30 --> 1.8.39 devel/hs-hoogle 4.2.11_1 --> 4.2.14 devel/hs-hslogger 1.1.5_2 --> 1.2.1 devel/hs-hspec 1.2.0.1 --> 1.4.2 devel/hs-language-javascript 0.5.4_1 --> 0.5.7 devel/hs-largeword 1.0.1_2 --> 1.0.3 devel/hs-lifted-base 0.1.1_1 --> 0.2 devel/hs-logict 0.5.0.1_1 --> 0.5.0.2 devel/hs-monad-control 0.3.1.3_1 --> 0.3.1.4 devel/hs-mtl 2.1.1_1 --> 2.1.2 devel/hs-murmur-hash 0.1.0.5_2 --> 0.1.0.6 devel/hs-parallel 3.2.0.2_1 --> 3.2.0.3 devel/hs-pool-conduit 0.1.0.2_1 --> 0.1.0.3 devel/hs-primitive 0.4.1_2 --> 0.5.0.1 devel/hs-resource-pool 0.2.1.0_1 --> 0.2.1.1 devel/hs-resourcet 0.3.3.1 --> 0.4.4 devel/hs-silently 1.2.0.2 --> 1.2.4 devel/hs-split 0.1.4.3 --> 0.2.1.1 devel/hs-stm 2.3_1 --> 2.4 devel/hs-syb 0.3.6.1_1 --> 0.3.7 devel/hs-syb-with-class 0.6.1.3_2 --> 0.6.1.4 devel/hs-system-fileio 0.3.8 --> 0.3.10 devel/hs-system-filepath 0.4.6_1 --> 0.4.7 devel/hs-tagged 0.4.2.1_1 --> 0.4.4 devel/hs-temporary 1.1.2.3_1 --> 1.1.2.4 devel/hs-terminfo 0.3.2.4 --> 0.3.2.5 devel/hs-test-framework 0.6_1 --> 0.8 devel/hs-test-framework-hunit 0.2.7_2 --> 0.3.0 devel/hs-test-framework-quickcheck2 0.2.12.2_1 --> 0.3.0.1 devel/hs-text 0.11.2.0_1 --> 0.11.2.3 devel/hs-threadscope 0.2.1_3 --> 0.2.2 devel/hs-uniplate 1.6.7_1 --> 1.6.10 devel/hs-unix-compat 0.3.0.1_1 --> 0.4.0.0 devel/hs-unordered-containers 0.2.1.0_1 --> 0.2.2.1 devel/hs-uuagc 0.9.40.3_1 --> 0.9.42.2 devel/hs-uuagc-cabal 1.0.2.0_2 --> 1.0.4.0 devel/hs-vault 0.2.0.0_1 --> 0.2.0.1 devel/hs-vector 0.9.1_2 --> 0.10.0.1 devel/hs-vector-algorithms 0.5.4_1 --> 0.5.4.2 devel/hs-void 0.5.6 --> 0.5.8 ftp/hs-curl 1.3.7_3 --> 1.3.8 graphics/hs-cairo 0.12.3.1_1 --> 0.12.4 lang/hs-unlambda 0.1_6 --> 0.1.3 mail/hs-email-validate 0.2.8_1 --> 0.3.2 mail/hs-mime 0.3.3.2 --> 0.3.4 mail/hs-mime-mail 0.4.1.1_2 --> 0.4.1.2 math/hs-categories 1.0.3_1 --> 1.0.4 math/hs-comonad 1.1.1.6_1 --> 3.0.0.2 math/hs-comonad-transformers 2.1.2 --> 3.0 math/hs-data-lens 2.10.0_1 --> 2.10.2 math/hs-data-lens-template 2.1.5_1 --> 2.1.7 math/hs-math-functions 0.1.1.1_2 --> 0.1.1.2 [1] math/hs-mwc-random 0.12.0.0_1 --> 0.12.0.1 math/hs-pointed 2.1.0.2_1 --> 3.0.1 math/hs-semigroupoids 1.3.4 --> 3.0.0.1 math/hs-semigroups 0.8.3.2_1 --> 0.8.4.1 math/hs-statistics 0.10.1.0_1 --> 0.10.2.0 math/hs-vector-space 0.8.2 --> 0.8.6 multimedia/hs-gstreamer 0.12.1.1_1 --> 0.12.1.2 net/hs-network 2.3.0.13_1 --> 2.3.1.0 net/hs-network-conduit 0.4.0.1_1 --> 0.6.1.1 net/hs-pcap 0.4.5.1_4 --> 0.4.5.2 net/hs-sendfile 0.7.6_1 --> 0.7.8 net/hs-simple-sendfile 0.2.4 --> 0.2.8 net/hs-socks 0.4.1_1 --> 0.4.2 print/hs-hscolour 1.20.2,1 --> 1.20.3,1 security/hs-Crypto 4.2.5_1 --> 4.2.5.1 security/hs-HsOpenSSL 0.10.3.2 --> 0.10.3.3 security/hs-RSA 1.2.1.0_1 --> 1.2.2.0 security/hs-SHA 1.5.0.1_1 --> 1.6.1 security/hs-certificate 1.2.3_1 --> 1.3.3 security/hs-clientsession 0.7.5_1 --> 0.8.0.1 security/hs-cprng-aes 0.2.3_2 --> 0.2.4 security/hs-crypto-conduit 0.3.2_1 --> 0.4.1 security/hs-crypto-pubkey-types 0.1.1_1 --> 0.2.0 security/hs-cryptocipher 0.3.5 --> 0.3.6 security/hs-cryptohash 0.7.5_1 --> 0.7.9 security/hs-digest 0.0.1.1_1 --> 0.0.1.2 security/hs-monadcryptorandom 0.4.1_1 --> 0.5 security/hs-pureMD5 2.1.0.3_2 --> 2.1.2.1 security/hs-pwstore-fast 2.2_2 --> 2.3 security/hs-skein 0.1.0.7_1 --> 0.1.0.10 security/hs-tls 0.9.5_1 --> 1.0.2 security/hs-tls-extra 0.4.6_1 --> 0.5.0 sysutils/hs-angel 0.3.2_1 --> 0.3.3 textproc/hs-HStringTemplate 0.6.8_2 --> 0.6.12 textproc/hs-attoparsec-conduit 0.4.0.1_1 --> 0.5.0.3 textproc/hs-attoparsec-enumerator 0.3_2 --> 0.3.1 textproc/hs-blaze-html 0.5.0.0 --> 0.5.1.1 textproc/hs-blaze-markup 0.5.1.0_1 --> 0.5.1.2 textproc/hs-case-insensitive 0.4.0.1_2 --> 0.4.0.3 textproc/hs-citeproc-hs 0.3.4_1 --> 0.3.6 textproc/hs-double-conversion 0.2.0.4_2 --> 0.2.0.5 textproc/hs-highlighting-kate 0.5.1_1 --> 0.5.3.3 textproc/hs-hs-bibutils 4.12_4 --> 4.15 textproc/hs-html-conduit 0.0.1_1 --> 0.1.0.4 textproc/hs-hxt 9.2.2_1 --> 9.3.1.1 textproc/hs-lhs2tex 1.17_4 --> 1.18.1 textproc/hs-pandoc 1.9.4.2 --> 1.9.4.5 textproc/hs-parsec 3.1.2_1 --> 3.1.3 textproc/hs-regex-pcre-builtin 0.94.2.1.7.7_4 --> 0.94.4.3.8.31 textproc/hs-regex-posix 0.95.1_2 --> 0.95.2 textproc/hs-stringsearch 0.3.6.3_2 --> 0.3.6.4 textproc/hs-tagsoup 0.12.6_2 --> 0.12.8 textproc/hs-tagstream-conduit 0.3.2_1 --> 0.5.3 textproc/hs-texmath 0.6.0.6_1 --> 0.6.1.1 textproc/hs-xml-conduit 0.7.0.3_1 --> 1.0.3.3 textproc/hs-xml-types 0.3.2 --> 0.3.3 textproc/hs-xmlhtml 0.2.0.2 --> 0.2.0.3 textproc/hs-yaml 0.7.0.3 --> 0.8.1.1 www/hs-HTTP 4000.2.3_1 --> 4000.2.5 www/hs-authenticate 1.2.1.1_1 --> 1.3.2 www/hs-cookie 0.4.0_1 --> 0.4.0.1 www/hs-gitit 0.10.0.1 --> 0.10.0.2 www/hs-hamlet 1.0.1.4 --> 1.1.1.1 www/hs-happstack 7.0.0_1 --> 7.0.1 www/hs-happstack-server 7.0.3 --> 7.1.1 www/hs-heist 0.8.1.1 --> 0.8.2 www/hs-hjsmin 0.1.2_1 --> 0.1.3 www/hs-http-conduit 1.4.1.10 --> 1.8.4.3 www/hs-http-date 0.0.2_1 --> 0.0.3 www/hs-http-server 1_5 --> 1.0.1 www/hs-http-types 0.6.11_1 --> 0.7.3.0.1 www/hs-path-pieces 0.1.1_1 --> 0.1.2 www/hs-shakespeare 1.0.0.2_1 --> 1.0.2 www/hs-shakespeare-css 1.0.1.2_1 --> 1.0.2 www/hs-shakespeare-js 1.0.0.3_1 --> 1.1.0 www/hs-shakespeare-text 1.0.0.2_1 --> 1.0.0.5 www/hs-snap 0.9.0.1 --> 0.9.2.2 www/hs-snap-core 0.9.0 --> 0.9.2.2 www/hs-snap-server 0.9.0 --> 0.9.2.4 www/hs-wai 1.2.0.3 --> 1.3.0.1 www/hs-wai-app-static 1.2.0.4 --> 1.3.0.4 www/hs-wai-extra 1.2.0.5 --> 1.3.0.4 www/hs-wai-logger 0.1.4_1 --> 0.3.0 www/hs-wai-test 1.2.0.2_1 --> 1.3.0 www/hs-warp 1.2.2 --> 1.3.5 www/hs-yesod 1.0.1.6_1 --> 1.1.4.1 www/hs-yesod-auth 1.0.2.1_1 --> 1.1.2 www/hs-yesod-core 1.0.1.2_1 --> 1.1.6.1 www/hs-yesod-default 1.0.1.1_1 --> 1.1.2 www/hs-yesod-form 1.0.0.4_1 --> 1.2.0.1 www/hs-yesod-json 1.0.0.1_1 --> 1.1.2 www/hs-yesod-persistent 1.0.0.1_1 --> 1.1.0 www/hs-yesod-platform 1.0.5 --> 1.1.5 www/hs-yesod-routes 1.0.1.2_1 --> 1.1.1.1 www/hs-yesod-static 1.0.0.3_1 --> 1.1.1.1 www/hs-yesod-test 0.2.1 --> 0.3.1.1 x11-toolkits/hs-gtk 0.12.3.1 --> 0.12.4 x11-toolkits/hs-pango 0.12.3_1 --> 0.12.4 Removed ports (1): textproc/hs-xml2html 0.1.2.3_1 Approved by: wen (maintainer) [1] Obtained from: FreeBSD Haskell
2012-12-20 02:23:04 +00:00
# Created by: Giuseppe Pilichi aka Jacula Modyun <jacula@gmail.com>
This is a collection of Haskell data structures and algorithms useful for building bioinformatics-related tools and utilities. Current list of features includes: a Sequence data type supporting protein and nucleotide sequences and conversion between them. WWW: http://blog.malde.org/index.php/the-haskell-bioinformatics-library/ PR: ports/142187 Submitted by: Jacula Modyun <jacula(at)gmail.com>
2010-01-03 05:02:13 +00:00
# $FreeBSD$
PORTNAME= bio
- Update The Glorious Glasgow Haskell Compiler to version 7.8.3 - Update Haskell Platform to version 2014.2.0.0 - Update Yesod Platform to version 1.2.13 - Update Gtk2Hs to version 0.12.5 - Update Pandoc to version 1.12.4.2 - Update git-annex to version 5.20140717 - Unbreak wxHaskell ports Please note that port revisions for all the Haskell ports without version changes are bumped. New ports (69): databases/hs-esqueleto: Type-safe EDSL for SQL queries on persistent backends devel/hs-Glob: Globbing library devel/hs-STMonadTrans: Monad transformer version of the ST monad devel/hs-auto-update: Efficiently run periodic, on-demand actions devel/hs-asn1-encoding: ASN1 data reader and writer in RAW, BER and DER forms devel/hs-asn1-parse: Simple monadic parser for ASN1 stream types devel/hs-atomic-primops: Safe approach to CAS and other atomic operations devel/hs-boxes: 2D text pretty-printing library devel/hs-byteable: Type class for sequence of bytes devel/hs-chunked-data: Typeclasses for dealing with chunked data devel/hs-conduit-combinators: Commonly used conduit functions devel/hs-conduit-extra: Conduit adapters for common libraries devel/hs-data-hash: Combinators for building fast hashing functions devel/hs-deepseq-generics: Generics-based Control.DeepSeq.rnf implementation devel/hs-dlist-instances: Difference lists instances devel/hs-enclosed-exceptions: Catching exceptions within enclosed computations devel/hs-equivalence: Maintaining equivalence relations as union-find devel/hs-exceptions: Extensible optionally-pure exceptions devel/hs-free: Monads for free devel/hs-hslua: Lua language interpreter embedding in Haskell devel/hs-keys: Keyed functors and containers devel/hs-monad-loops: Monadic loops devel/hs-monads-tf: Monad classes, using type families devel/hs-mono-traversable: Traversing monomorphic containers devel/hs-prelude-extras: Higher-order versions of Prelude classes devel/hs-prettyclass: Pretty printing class similar to Show devel/hs-scientific: Numbers represented using scientific notation devel/hs-securemem: Auto scrubbing and const time eq, memory chunk devel/hs-shake: Build system library, like Make, but more accurate dependencies devel/hs-stm-chans: Additional types of channels for STM devel/hs-streaming-commons: Common functions for streaming data libraries devel/hs-text-icu: Bindings to the ICU library devel/hs-tf-random: High-quality splittable pseudorandom number generator devel/hs-transformers-compat: Compatibility shim for transformers devel/hs-vector-binary-instances: Binary instances for vector devel/hs-vector-instances: Orphan Instances for 'Data.Vector' devel/hs-vector-th-unbox: Deriver for Data.Vector.Unboxed with Template Haskell dns/hs-dns: DNS library in Haskell dns/hs-gnuidn: Bindings for GNU IDN net/hs-connection: Simple and easy network connections API net/hs-gsasl: Bindings for GNU libgsasl net/hs-iproute: IP Routing Table net/hs-network-protocol-xmpp: Client library for the XMPP protocol security/hs-DRBG: Deterministic random bit generator security/hs-cipher-aes128: AES and common modes using AES-NI when available security/hs-cipher-blowfish: Blowfish cipher security/hs-cipher-camellia: Camellia block cipher primitives security/hs-cipher-des: DES and 3DES primitives security/hs-crypto-cipher-types: Generic cryptography cipher types security/hs-crypto-random: Simple cryptographic random related types security/hs-cryptohash-conduit: Cryptohash conduit security/hs-cryptohash-cryptoapi: Crypto-api interfaces for cryptohash security/hs-gnutls: Bindings for GNU libgnutls security/hs-x509: X509 reader and writer security/hs-x509-store: X.509 collection accessing and storing methods security/hs-x509-system: Per-operating-system X.509 accessors and storage security/hs-x509-validation: X.509 Certificate and CRL validation sysutils/hs-ekg: Remote monitoring of processes sysutils/hs-ekg-core: Tracking of system metrics textproc/hs-appar: Simple applicative parser textproc/hs-libxml-sax: Bindings for the libXML2 SAX interface textproc/hs-uri: Library for working with URIs textproc/hs-xml-hamlet: Hamlet-style quasiquoter for XML content www/hs-DAV: RFC 4918 WebDAV support www/hs-http-client: HTTP client engine www/hs-http-client-tls: http-client backend with TLS support www/hs-warp-tls: HTTP over SSL/TLS support for Warp via the TLS package www/hs-yesod-auth-hashdb: Authentication plugin for Yesod www/hs-yesod-bin: Yesod helper executable Updated ports (279): archivers/hs-zip-archive 0.1.3.4_5 --> 0.2.3.2 archivers/hs-zlib-enum 0.2.3_6 --> 0.2.3.1 audio/hs-ALUT 2.2.0.0_14 --> 2.3.0.1 audio/hs-OpenAL 1.4.0.2_5 --> 1.6.0.0 audio/hs-libmpd 0.8.0.2_5 --> 0.8.0.5 benchmarks/hs-criterion 0.6.2.1_6 --> 0.8.1.0 converters/hs-aeson 0.6.1.0_6 --> 0.7.0.6 converters/hs-dataenc 0.14.0.5_5 --> 0.14.0.7 databases/hs-mysql 0.1.1.4_8 --> 0.1.1.6 databases/hs-persistent 1.2.0.1_4 --> 1.3.1.1 databases/hs-persistent-sqlite 1.2.0_4 --> 1.3.0.5 databases/hs-persistent-template 1.2.0_4 --> 1.3.1.4 devel/hs-Boolean 0.2_5 --> 0.2.1 devel/hs-ConfigFile 1.1.1_9 --> 1.1.2 devel/hs-DrIFT 2.2.3_8 --> 2.4.2 devel/hs-MemoTrie 0.6.1_6 --> 0.6.2 devel/hs-MissingH 1.2.0.0_6 --> 1.2.1.0 devel/hs-MonadCatchIO-mtl 0.3.0.5_6 --> 0.3.1.0 devel/hs-MonadCatchIO-transformers 0.3.0.0_8 --> 0.3.1.0 devel/hs-MonadRandom 0.1.9_4 --> 0.1.13 devel/hs-SafeSemaphore 0.9.0_6 --> 0.10.1 devel/hs-Stream 0.4.6.1_6 --> 0.4.7.1 devel/hs-TypeCompose 0.9.9_5 --> 0.9.10 devel/hs-abstract-deque 0.2_4 --> 0.3 devel/hs-abstract-par 0.3.1_8 --> 0.3.3 devel/hs-alex 3.0.5_4 --> 3.1.3 devel/hs-ansi-terminal 0.6_5 --> 0.6.1.1 devel/hs-ansi-wl-pprint 0.6.6_6 --> 0.6.7.1 devel/hs-asn1-types 0.1.3_4 --> 0.2.3 devel/hs-async 2.0.1.4_4 --> 2.0.1.5 devel/hs-base16-bytestring 0.1.1.5_7 --> 0.1.1.6 devel/hs-basic-prelude 0.3.5.0_4 --> 0.3.8 devel/hs-bifunctors 3.2.0.1_5 --> 4.1.1.1 devel/hs-blaze-builder 0.3.1.1_4 --> 0.3.3.2 devel/hs-blaze-builder-enumerator 0.2.0.5_6 --> 0.2.0.6 devel/hs-blaze-textual 0.2.0.8_6 --> 0.2.0.9 devel/hs-bloomfilter 1.2.6.10_7 --> 2.0.0.0 devel/hs-bytestring-show 0.3.5.5_4 --> 0.3.5.6 devel/hs-c2hs 0.16.4_6 --> 0.17.2 devel/hs-cabal-install 1.16.0.2_4 --> 1.18.0.5 devel/hs-cereal 0.3.5.2_7 --> 0.4.0.1 devel/hs-checkers 0.3.1_5 --> 0.3.2 devel/hs-classy-prelude 0.5.7_4 --> 0.9.3 devel/hs-classy-prelude-conduit 0.5.3_5 --> 0.9.3 devel/hs-cmdargs 0.10.3_4 --> 0.10.9 devel/hs-conduit 1.0.5_4 --> 1.1.7 devel/hs-configurator 0.2.0.2_6 --> 0.3.0.0 devel/hs-convertible 1.0.11.1_8 --> 1.1.0.0 devel/hs-cpphs 1.16_5 --> 1.18.5 devel/hs-data-pprint 0.2.1.4_6 --> 0.2.3 devel/hs-directory-tree 0.11.0_6 --> 0.12.0 devel/hs-dlist 0.5_13 --> 0.7.1 devel/hs-either 3.4_5 --> 4.3.0.1 devel/hs-enumerator 0.4.19_8 --> 0.4.20 devel/hs-errors 1.4.1_5 --> 1.4.7 devel/hs-fast-logger 0.3.1_7 --> 2.2.0 devel/hs-fgl 5.4.2.4_9 --> 5.5.0.1 devel/hs-file-embed 0.0.4.7_5 --> 0.0.7 devel/hs-filestore 0.6.0.1_5 --> 0.6.0.3 devel/hs-fsnotify 0.0.11_4 --> 0.1.0.3 devel/hs-gconf 0.12.1.1_6 --> 0.12.5.0 devel/hs-generic-deriving 1.5.0_4 --> 1.6.3 devel/hs-geniplate 0.6.0.3_5 --> 0.6.0.4 devel/hs-ghc-events 0.4.2.0_6 --> 0.4.3.0 devel/hs-ghc-mtl 1.0.1.2_6 --> 1.2.1.0 devel/hs-gio 0.12.4_6 --> 0.12.5.3 devel/hs-glade 0.12.1_10 --> 0.12.5.0 devel/hs-glib 0.12.4_6 --> 0.12.5.4 devel/hs-gtk2hs-buildtools 0.12.4_6 --> 0.12.5.2 devel/hs-haddock 2.13.2_4 --> 2.14.2 devel/hs-happy 1.18.10_6 --> 1.19.4 devel/hs-hashable 1.1.2.5_4,1 --> 1.2.2.0,1 devel/hs-hashed-storage 0.5.10_6 --> 0.5.11 devel/hs-hashtables 1.1.0.2_5 --> 1.1.2.1 devel/hs-haskell-src 1.0.1.5_8 --> 1.0.1.6 devel/hs-haskell-src-exts 1.13.5_6 --> 1.15.0.1 devel/hs-hasktags 0.68.2_5 --> 0.69.0 devel/hs-hastache 0.5.0_5 --> 0.6.0 devel/hs-hinotify 0.3.5_6 --> 0.3.7 devel/hs-hint 0.3.3.6_5 --> 0.4.2.0 devel/hs-hlint 1.8.45_4 --> 1.9.3 devel/hs-hoogle 4.2.16_5 --> 4.2.34 devel/hs-hslogger 1.2.1_6 --> 1.2.4 devel/hs-hspec 1.5.4_4 --> 1.11.0 devel/hs-hspec-expectations 0.3.2_4 --> 0.6.0.1 devel/hs-kqueue 0.1.2.4_6 --> 0.1.2.6 devel/hs-language-c 0.3.2.1_11 --> 0.4.5 devel/hs-language-javascript 0.5.7_6 --> 0.5.13 devel/hs-largeword 1.0.5_4 --> 1.2.3 devel/hs-lens 3.9.0.2_4 --> 4.3.3 devel/hs-lifted-base 0.2.0.5_4 --> 0.2.3.0 devel/hs-logict 0.6_5 --> 0.6.0.2 devel/hs-mmap 0.5.8_7 --> 0.5.9 devel/hs-mmorph 1.0.0_4 --> 1.0.3 devel/hs-monad-control 0.3.2.1_4 --> 0.3.3.0 devel/hs-monad-logger 0.3.1.1_4 --> 0.3.7.1 devel/hs-monad-par 0.3.4.2_4 --> 0.3.4.6 devel/hs-monad-par-extras 0.3.2_8 --> 0.3.3 devel/hs-mtl 2.1.2_6 --> 2.1.3.1 devel/hs-mueval 0.9_5 --> 0.9.1.1 devel/hs-murmur-hash 0.1.0.6_6 --> 0.1.0.7 devel/hs-optparse-applicative 0.5.2.1_5 --> 0.9.1.1 devel/hs-parallel 3.2.0.3_6 --> 3.2.0.4 devel/hs-pcre-light 0.4_13 --> 0.4.0.2 devel/hs-primitive 0.5.0.1_6 --> 0.5.2.1 devel/hs-profunctors 3.3.0.1_4 --> 4.2.0.1 devel/hs-project-template 0.1.3_5 --> 0.1.4.1 devel/hs-quickcheck-io 0.1.0_4 --> 0.1.1 devel/hs-reflection 1.3.2_4 --> 1.5.1 devel/hs-resource-pool 0.2.1.1_6 --> 0.2.3.0 devel/hs-resourcet 0.4.7.1_4 --> 1.1.2.3 devel/hs-safe 0.3.3_9 --> 0.3.7 devel/hs-setenv 0.1.0_6 --> 0.1.1.1 devel/hs-simple-reflect 0.3.1_5 --> 0.3.2 devel/hs-smallcheck 1.0.2_5 --> 1.1.1 devel/hs-syb 0.4.0_4 --> 0.4.1 devel/hs-syb-with-class 0.6.1.4_6 --> 0.6.1.5 devel/hs-system-fileio 0.3.11_5 --> 0.3.14 devel/hs-system-filepath 0.4.7_6 --> 0.4.12 devel/hs-tagged 0.6_4 --> 0.7.2 devel/hs-temporary 1.1.2.4_6 --> 1.2.0.3 devel/hs-test-framework 0.8_7 --> 0.8.0.3 devel/hs-test-framework-hunit 0.3.0_7 --> 0.3.0.1 devel/hs-test-framework-quickcheck2 0.3.0.1_7 --> 0.3.0.3 devel/hs-text 0.11.3.1_4 --> 1.1.0.0 devel/hs-threads 0.5.0.2_5 --> 0.5.1.2 devel/hs-threadscope 0.2.2_6 --> 0.2.4 devel/hs-timezone-olson 0.1.2_5 --> 0.1.4 devel/hs-timezone-series 0.1.2_5 --> 0.1.3 devel/hs-transformers-base 0.4.1_9 --> 0.4.2 devel/hs-uniplate 1.6.10_6 --> 1.6.12 devel/hs-unix-compat 0.4.1.1_4 --> 0.4.1.3 devel/hs-unix-time 0.1.8_4 --> 0.3.3 devel/hs-unordered-containers 0.2.3.1_4 --> 0.2.4.0 devel/hs-utf8-light 0.4.0.1_8 --> 0.4.2 devel/hs-utf8-string 0.3.7_9 --> 0.3.8 devel/hs-utility-ht 0.0.9_4 --> 0.0.10 devel/hs-uuagc 0.9.42.3_4 --> 0.9.51 devel/hs-uuagc-cabal 1.0.4.0_7 --> 1.0.5.0 devel/hs-uuid 1.2.13_4 --> 1.3.3 devel/hs-uulib 0.9.15_5 --> 0.9.16 devel/hs-vault 0.2.0.4_5 --> 0.3.0.3 devel/hs-vector 0.10.0.1_6 --> 0.10.9.1 devel/hs-vector-algorithms 0.5.4.2_6 --> 0.6.0.3 devel/hs-void 0.6_4 --> 0.6.1 devel/hs-word8 0.0.3_5 --> 0.1.1 graphics/hs-HGL 3.2.0.2_14 --> 3.2.0.5 graphics/hs-cairo 0.12.4_6 --> 0.12.5.3 graphics/hs-svgcairo 0.12.1.1_8 --> 0.12.5.2 mail/hs-email-validate 1.0.0_5 --> 2.0.1 mail/hs-mime 0.3.4_6 --> 0.4.0.1 mail/hs-mime-mail 0.4.1.2_7 --> 0.4.5.2 mail/hs-mime-types 0.1.0.3_5 --> 0.1.0.4 math/hs-Agda 2.3.2_6 --> 2.4.0.2 math/hs-categories 1.0.5_5 --> 1.0.6 math/hs-comonad 3.0.2_5 --> 4.2.2 math/hs-contravariant 0.4_5 --> 1.1 math/hs-data-lens 2.10.2_7 --> 2.10.5 math/hs-data-lens-template 2.1.7_7 --> 2.1.8 math/hs-distributive 0.3.1_5 --> 0.4.4 math/hs-math-functions 0.1.3.0_5 --> 0.1.5.2 math/hs-mwc-random 0.12.0.1_6 --> 0.13.1.2 math/hs-nats 0.1_5 --> 0.2 math/hs-pointed 3.0.2_6 --> 4.1 math/hs-probability 0.2.4_8 --> 0.2.4.1 math/hs-semigroupoids 3.0.2_6 --> 4.0.4 math/hs-semigroups 0.9.1_4 --> 0.15.2 math/hs-statistics 0.10.3.1_4 --> 0.13.2.1 math/hs-vector-space 0.8.6_7 --> 0.8.7 multimedia/hs-gstreamer 0.12.1.2_6 --> 0.12.5.0 net/hs-network 2.4.1.2_4 --> 2.4.2.3 net/hs-network-info 0.2.0.3_6 --> 0.2.0.5 net/hs-network-multicast 0.0.7_6 --> 0.0.11 net/hs-simple-sendfile 0.2.11_5 --> 0.2.15 net/hs-socks 0.5.1_4 --> 0.5.4 science/hs-bio 0.5.2_8 --> 0.5.3 security/hs-HsOpenSSL 0.10.3.3_6 --> 0.11 security/hs-RSA 1.2.2.0_7 --> 2.0.0 security/hs-SHA 1.6.1_6 --> 1.6.4.1 security/hs-certificate 1.3.7_4 --> 1.3.9 security/hs-cipher-aes 0.1.8_4 --> 0.2.8 security/hs-cipher-rc4 0.1.2_5 --> 0.1.4 security/hs-clientsession 0.9_4 --> 0.9.0.3 security/hs-cprng-aes 0.3.4_6 --> 0.5.2 security/hs-crypto-api 0.12.1_4 --> 0.13 security/hs-crypto-conduit 0.5.2_4 --> 0.5.4 security/hs-crypto-numbers 0.1.3_5 --> 0.2.3 security/hs-crypto-pubkey 0.1.3_4 --> 0.2.4 security/hs-crypto-pubkey-types 0.3.2_4 --> 0.4.2.2 security/hs-cryptocipher 0.5.0_4 --> 0.6.2 security/hs-cryptohash 0.9.0_4 --> 0.11.6 security/hs-entropy 0.2.1_9 --> 0.3.2 security/hs-monadcryptorandom 0.5.1_5 --> 0.6.1 security/hs-pem 0.1.2_6 --> 0.2.2 security/hs-pwstore-fast 2.3_7 --> 2.4.1 security/hs-skein 1.0.3_4 --> 1.0.9 security/hs-tls 1.1.2_5 --> 1.2.8 sysutils/hs-angel 0.3.4_6 --> 0.5.0 sysutils/hs-cpu 0.1.1_7 --> 0.1.2 textproc/hs-Diff 0.2.0_5 --> 0.3.0 textproc/hs-HStringTemplate 0.7.1_5 --> 0.7.3 textproc/hs-HaXml 1.24_4 --> 1.24.1 textproc/hs-attoparsec-enumerator 0.3.1_7 --> 0.3.3 textproc/hs-blaze-html 0.6.1.1_4 --> 0.7.0.2 textproc/hs-blaze-markup 0.5.1.5_4 --> 0.6.1.0 textproc/hs-case-insensitive 1.0.0.2_4 --> 1.1.0.3 textproc/hs-citeproc-hs 0.3.8_5 --> 0.3.9 textproc/hs-feed 0.3.8_13 --> 0.3.9.2 textproc/hs-hexpat 0.20.3_6 --> 0.20.6 textproc/hs-highlighting-kate 0.5.3.9_4 --> 0.5.8.5 textproc/hs-html-conduit 1.1.0_5 --> 1.1.0.5 textproc/hs-hxt 9.3.1.1_7 --> 9.3.1.4 textproc/hs-hxt-charproperties 9.1.1_9 --> 9.1.1.1 textproc/hs-hxt-unicode 9.0.2_9 --> 9.0.2.2 textproc/hs-pandoc-types 1.10_5 --> 1.12.4.1 textproc/hs-parsec 3.1.3_6 --> 3.1.5 textproc/hs-regex-pcre-builtin 0.94.4.5.8.31_5 --> 0.94.4.8.8.35 textproc/hs-regex-tdfa 1.1.8_5 --> 1.2.0 textproc/hs-stringsearch 0.3.6.4_6 --> 0.3.6.5 textproc/hs-tagsoup 0.12.8_6 --> 0.13.1 textproc/hs-tagstream-conduit 0.5.4_5 --> 0.5.5.1 textproc/hs-texmath 0.6.1.5_4 --> 0.6.7 textproc/hs-xml-conduit 1.1.0.3_5 --> 1.2.1 textproc/hs-xml-types 0.3.3_6 --> 0.3.4 textproc/hs-xmlhtml 0.2.1_5 --> 0.2.3.2 textproc/hs-yaml 0.8.2.4_4 --> 0.8.8.4 www/hs-HTTP 4000.2.8_4 --> 4000.2.10 www/hs-authenticate 1.3.2.6_5 --> 1.3.2.9 www/hs-cgi 3001.1.7.5_4,1 --> 3001.1.8.5,1 www/hs-cookie 0.4.0.1_6 --> 0.4.1.2 www/hs-css-text 0.1.1_10 --> 0.1.2.1 www/hs-gitit 0.10.3.1_5 --> 0.10.4 www/hs-hS3 0.5.7_5 --> 0.5.8 www/hs-happstack 7.0.1_7 --> 7.0.2 www/hs-happstack-server 7.1.7.1_4 --> 7.3.7 www/hs-heist 0.12.0_4 --> 0.13.1.2 www/hs-hjsmin 0.1.4.1_5 --> 0.1.4.7 www/hs-http-conduit 1.9.3_4 --> 2.1.4 www/hs-http-reverse-proxy 0.1.1.6_4 --> 0.4.0.1 www/hs-http-server 1.0.2_5 --> 1.0.4 www/hs-http-types 0.8.0_5 --> 0.8.5 www/hs-oeis 0.3.1_10 --> 0.3.5 www/hs-path-pieces 0.1.2_6 --> 0.1.4 www/hs-recaptcha 0.1_9 --> 0.1.0.2 www/hs-shakespeare 1.0.5_4 --> 2.0.1.1 www/hs-snap 0.12.0_4 --> 0.13.2.8 www/hs-snap-core 0.9.3.1_5 --> 0.9.6.3 www/hs-snap-server 0.9.3.3_5 --> 0.9.4.5 www/hs-wai 1.4.0_5 --> 3.0.1.1 www/hs-wai-app-static 1.3.1.2_5 --> 3.0.0 www/hs-wai-extra 1.3.4_4 --> 3.0.1.2 www/hs-wai-logger 0.3.0_7 --> 2.2.0 www/hs-warp 1.3.8.1_4 --> 3.0.0.5 www/hs-webkit 0.12.4_8 --> 0.12.6.1 www/hs-xss-sanitize 0.3.3_6 --> 0.3.5.2 www/hs-yesod 1.2.0.1_4 --> 1.2.6.1 www/hs-yesod-auth 1.2.0_4 --> 1.3.4 www/hs-yesod-core 1.2.0.4_4 --> 1.2.19 www/hs-yesod-form 1.3.0_4 --> 1.3.14 www/hs-yesod-persistent 1.2.0_4 --> 1.2.3 www/hs-yesod-routes 1.2.0_4 --> 1.2.0.7 www/hs-yesod-static 1.2.0_4 --> 1.2.4 www/hs-yesod-test 1.2.0_4 --> 1.2.3.2 x11-toolkits/hs-GLURaw 1.3.0.0_4 --> 1.4.0.1 x11-toolkits/hs-GLUT 2.4.0.0_5,1 --> 2.5.1.1,1 x11-toolkits/hs-OpenGL 2.8.0.0_4,1 --> 2.9.2.0,1 x11-toolkits/hs-OpenGLRaw 1.3.0.0_5 --> 1.5.0.0 x11-toolkits/hs-gtk 0.12.4_6 --> 0.12.5.7 x11-toolkits/hs-gtkglext 0.12.1_10 --> 0.12.5.0 x11-toolkits/hs-gtksourceview2 0.12.3.1_8 --> 0.12.5.0 x11-toolkits/hs-pango 0.12.4_6 --> 0.12.5.3 x11-toolkits/hs-vte 0.12.1_10 --> 0.12.5.0 x11-toolkits/hs-wx 0.90.0.1_8 --> 0.90.1.0 x11-toolkits/hs-wxc 0.90.0.4_7 --> 0.90.1.1 x11-toolkits/hs-wxcore 0.90.0.3_7 --> 0.90.1.1 x11-toolkits/hs-wxdirect 0.90.0.1_8 --> 0.90.1.1 x11-wm/hs-xmonad-contrib 0.11.1_6 --> 0.11.3 x11/hs-X11 1.6.1.1_6 --> 1.6.1.2 x11/hs-xmobar 0.17_4 --> 0.21 Removed ports (28): archivers/hs-zlib-conduit: Deprecated in favor of conduit-extra devel/hs-IORefCAS: Deprecated in favor of atomic-primops devel/hs-StateVar: Deprecated devel/hs-Tensor: Depcrecated devel/hs-attempt: Deprecated in favor of exceptions devel/hs-base64-conduit: Deprecated in favor of conduit-combinators devel/hs-blaze-builder-conduit: Deprecated in favor of conduit-extra devel/hs-failure: Deprecated in favor or exceptions devel/hs-filesystem-conduit: Deprecated in favor of conduit-combinators devel/hs-haskeline: Become part of GHC devel/hs-pool-conduit: Deprecated in favor of resource-pool devel/hs-profunctor-extras: Absorbed into profunctors devel/hs-terminfo: Become part of GHC devel/hs-transformers: Become part of GHC math/hs-comonad-transformers: Deprecated in favor of comonad math/hs-comonads-fd: Deprecated in favor of comonad math/hs-groupoids: Deprecated in favor of semigroupoids math/hs-semigroupoid-extras: Deprecated in favor of semigroupoids net/hs-network-conduit: Deprecated in favor of conduit-extra security/hs-tls-extra: Deprecated in favor of tls textproc/hs-attoparsec-conduit: Deprecated in favor of conduit-extra textproc/hs-xhtml: Become part of GHC www/hs-hamlet: Deprecated in favor of shakespeare www/hs-shakespeare-css: Deprecated in favor of shakespeare www/hs-shakespeare-i18n: Deprecated in favor of shakespeare www/hs-shakespeare-js: Deprecated in favor of shakespeare www/hs-shakespeare-text: Deprecated in favor of shakespeare www/hs-wai-test: Deprecated in favor of wai-extra Approved by: portmgr (implicit, touching unstaged ports) Obtained from: FreeBSD Haskell
2014-08-10 22:34:50 +00:00
PORTVERSION= 0.5.3
This is a collection of Haskell data structures and algorithms useful for building bioinformatics-related tools and utilities. Current list of features includes: a Sequence data type supporting protein and nucleotide sequences and conversion between them. WWW: http://blog.malde.org/index.php/the-haskell-bioinformatics-library/ PR: ports/142187 Submitted by: Jacula Modyun <jacula(at)gmail.com>
2010-01-03 05:02:13 +00:00
CATEGORIES= science haskell
- Pass maintainership to haskell@FreeBSD.org: audio/hs-ALUT, audio/hs-OpenAL, benchmarks/hs-criterion converters/hs-json, devel/hs-DeepArrow, devel/hs-FileManip devel/hs-MemoTrie, devel/hs-MissingH, devel/hs-MonadCatchIO-mtl devel/hs-ObjectName, devel/hs-QuickCheck, devel/hs-StateVar devel/hs-Tensor, devel/hs-TypeCompose, devel/hs-arrows devel/hs-checkers, devel/hs-convertible, devel/hs-datetime devel/hs-deepseq, devel/hs-fgl, devel/hs-ghc-mtl, devel/hs-ghc-paths devel/hs-ghc-paths-docs, devel/hs-haskeline devel/hs-haskell-src-exts, devel/hs-hint, devel/hs-hoogle devel/hs-hslogger, devel/hs-mmap, devel/hs-mueval, devel/hs-reactive devel/hs-readline, devel/hs-safe, devel/hs-show, devel/hs-smallcheck devel/hs-split, devel/hs-testpack, devel/hs-transformers devel/hs-unamb, devel/hs-uniplate, devel/hs-unix-compat devel/hs-utility-ht, devel/hs-uuagc, devel/hs-uulib devel/hs-uvector, devel/hs-uvector-algorithms, graphics/hs-HGL lang/hs-brainfuck, lang/hs-unlambda, mail/hs-mime, math/hs-Agda math/hs-Agda-executable, math/hs-category-extras, math/hs-erf math/hs-mwc-random, math/hs-probability, math/hs-statistics math/hs-vector-space, print/hs-hscolour, print/hs-hscolour-docs science/hs-bio, textproc/hs-Diff, textproc/hs-feed textproc/hs-tagsoup, textproc/hs-texmath, textproc/hs-xml www/hs-HTTP, www/hs-cgi, www/hs-fastcgi, www/hs-http-server www/hs-oeis, www/hs-scgi, www/hs-url, x11-toolkits/hs-GLURaw x11-toolkits/hs-OpenGLRaw Approved by: pgj (mentor)
2010-05-26 11:18:46 +00:00
MAINTAINER= haskell@FreeBSD.org
- Update The Glorious Glasgow Haskell Compiler to version 7.6.3 - Update Haskell Platform to version 2013.2.0.0 Please note that port revisions for all the Haskell ports without version changes are bumped. Some highlights of the update: - Fix PDF generation for pandoc [1] - From now on, PREFIX/{lib,share,share/doc}/cabal/ghc-GHC_VERSION are used for hs- ports (Cabal packages) as prefixes to avoid problems when upgrading with portmaster(8) [2] - Experimental support for LLVM-based code generation (disabled by default) - Many simplifications, refactoring in bsd.cabal.mk New ports (11): devel/hs-asn1-types 0.1.3 devel/hs-data-default-class 0.0.1 devel/hs-data-default-instances-base 0.0.1 devel/hs-data-default-instances-containers 0.0.1 devel/hs-data-default-instances-dlist 0.0.1 devel/hs-data-default-instances-old-locale 0.0.1 devel/hs-extensible-exceptions 0.1.1.4 devel/hs-mmorph 1.0.0 devel/hs-quickcheck-io 0.1.0 x11-toolkits/hs-GLURaw 1.3.0.0 x11-toolkits/hs-OpenGLRaw 1.3.0.0 Updated ports (104): archivers/hs-zlib 0.5.4.0_1 --> 0.5.4.1 databases/hs-persistent 1.1.5.1 --> 1.2.0.1 databases/hs-persistent-sqlite 1.1.5 --> 1.2.0 databases/hs-persistent-template 1.1.2.4 --> 1.2.0 devel/hs-HUnit 1.2.5.1_1 --> 1.2.5.2 devel/hs-IORefCAS 0.2_3 --> 0.2.0.1 devel/hs-MonadRandom 0.1.8 --> 0.1.9 devel/hs-QuickCheck 2.5.1.1_1 --> 2.6 devel/hs-abstract-deque 0.1.6_1 --> 0.2 devel/hs-alex 3.0.2_1 --> 3.0.5 devel/hs-async 2.0.1.3_1 --> 2.0.1.4 devel/hs-basic-prelude 0.3.4.0 --> 0.3.5.0 devel/hs-blaze-builder 0.3.1.0_4 --> 0.3.1.1 devel/hs-byteorder 1.0.3_4 --> 1.0.4 devel/hs-cabal-install 0.14.0_4 --> 1.16.0.2 devel/hs-classy-prelude 0.5.3 --> 0.5.7 devel/hs-cmdargs 0.10.2 --> 0.10.3 devel/hs-conduit 1.0.2 --> 1.0.5 devel/hs-data-default 0.5.0_1 --> 0.5.3 devel/hs-fsnotify 0.0.6 --> 0.0.11 devel/hs-generic-deriving 1.4.0 --> 1.5.0 devel/hs-git-annex 4.20130323_1 --> 4.20130601 devel/hs-haddock 2.11.0_1 --> 2.13.2 devel/hs-hashable 1.2.0.5 --> 1.1.2.5,1 devel/hs-hlint 1.8.43 --> 1.8.45 devel/hs-hspec 1.4.4 --> 1.5.4 devel/hs-hspec-expectations 0.3.0.3_1 --> 0.3.2 devel/hs-largeword 1.0.4 --> 1.0.5 devel/hs-lens 3.8.7.3 --> 3.9.0.2 devel/hs-lifted-base 0.2.0.2 --> 0.2.0.5 devel/hs-monad-control 0.3.1.4_1 --> 0.3.2.1 devel/hs-monad-logger 0.3.0.1 --> 0.3.1.1 devel/hs-monad-par 0.3.4.1 --> 0.3.4.2 devel/hs-pool-conduit 0.1.1_1 --> 0.1.2 devel/hs-profunctors 3.3 --> 3.3.0.1 devel/hs-reflection 1.1.7 --> 1.3.2 devel/hs-resourcet 0.4.5 --> 0.4.7.1 devel/hs-show 0.5 --> 0.6 devel/hs-split 0.2.1.1_1 --> 0.2.2 devel/hs-stm 2.4_1 --> 2.4.2 devel/hs-syb 0.3.7_1 --> 0.4.0 devel/hs-tagged 0.4.4_1 --> 0.6 devel/hs-text 0.11.2.3_1 --> 0.11.3.1 devel/hs-unix-compat 0.4.1.0 --> 0.4.1.1 devel/hs-unix-time 0.1.5 --> 0.1.8 devel/hs-unordered-containers 0.2.3.0 --> 0.2.3.1 devel/hs-utility-ht 0.0.8_3 --> 0.0.9 devel/hs-uuagc 0.9.42.2_3 --> 0.9.42.3 devel/hs-uuid 1.2.9 --> 1.2.13 devel/hs-void 0.5.11 --> 0.6 math/hs-NumInstances 1.2 --> 1.3 math/hs-comonad-transformers 3.0.1_1 --> 3.0.2 math/hs-semigroups 0.9 --> 0.9.1 math/hs-statistics 0.10.2.0_2 --> 0.10.3.1 net/hs-network 2.3.1.0_1 --> 2.4.1.2 net/hs-publicsuffixlist 0.0.3 --> 0.1 net/hs-socks 0.5.0 --> 0.5.1 security/hs-certificate 1.3.5_1 --> 1.3.7 security/hs-cipher-aes 0.1.7 --> 0.1.8 security/hs-clientsession 0.8.1_1 --> 0.9 security/hs-crypto-api 0.11 --> 0.12.1 security/hs-crypto-conduit 0.5.0 --> 0.5.2 security/hs-crypto-pubkey 0.1.2_1 --> 0.1.3 security/hs-crypto-pubkey-types 0.2.0_1 --> 0.3.2 security/hs-cryptocipher 0.4.0_1 --> 0.5.0 security/hs-cryptohash 0.8.3_1 --> 0.9.0 security/hs-skein 0.1.0.12 --> 1.0.3 textproc/hs-HaXml 1.23.3_2 --> 1.24 textproc/hs-attoparsec-conduit 1.0.0 --> 1.0.1 textproc/hs-blaze-html 0.6.0.0 --> 0.6.1.1 textproc/hs-blaze-markup 0.5.1.4 --> 0.5.1.5 textproc/hs-case-insensitive 1.0 --> 1.0.0.2 textproc/hs-highlighting-kate 0.5.3.8 --> 0.5.3.9 textproc/hs-hs-bibutils 4.17 --> 5.0 textproc/hs-polyparse 1.8_3 --> 1.9 textproc/hs-texmath 0.6.1.3 --> 0.6.1.5 textproc/hs-xml 1.3.12_4 --> 1.3.13 textproc/hs-yaml 0.8.2.3 --> 0.8.2.4 www/hs-HTTP 4000.2.5_1 --> 4000.2.8 www/hs-cgi 3001.1.7.4_6,1 --> 3001.1.7.5,1 www/hs-hamlet 1.1.6.3 --> 1.1.7.1 www/hs-happstack-server 7.1.7 --> 7.1.7.1 www/hs-heist 0.11.1 --> 0.12.0 www/hs-http-conduit 1.9.0 --> 1.9.3 www/hs-http-reverse-proxy 0.1.1.3 --> 0.1.1.6 www/hs-shakespeare 1.0.3.1 --> 1.0.5 www/hs-shakespeare-css 1.0.3 --> 1.0.5.1 www/hs-shakespeare-js 1.1.2.1 --> 1.1.4 www/hs-snap 0.11.2 --> 0.12.0 www/hs-wai-extra 1.3.2.4 --> 1.3.4 www/hs-wai-test 1.3.0.4 --> 1.3.1 www/hs-warp 1.3.7.4 --> 1.3.8.1 www/hs-yesod 1.1.9.2 --> 1.2.0.1 www/hs-yesod-auth 1.1.5.3 --> 1.2.0 www/hs-yesod-core 1.1.8.2 --> 1.2.0.4 www/hs-yesod-form 1.2.1.3 --> 1.3.0 www/hs-yesod-persistent 1.1.0.1_1 --> 1.2.0 www/hs-yesod-platform 1.1.8 --> 1.2.0.1 www/hs-yesod-routes 1.1.2 --> 1.2.0 www/hs-yesod-static 1.1.2.2 --> 1.2.0 www/hs-yesod-test 0.3.5 --> 1.2.0 x11-toolkits/hs-GLUT 2.1.2.1_7,1 --> 2.4.0.0,1 x11-toolkits/hs-OpenGL 2.2.3.1_4,1 --> 2.8.0.0,1 x11/hs-xmobar 0.16_2 --> 0.17 Removed ports (2): www/hs-yesod-default 1.1.3.2 www/hs-yesod-json 1.1.2.1 PR: ports/179146 [1] Requested by: Omar Thameen <omar@biglist.com> [1] Reported by: sperber, bapt [2] Tested by: sperber [2] Obtained from: FreeBSD Haskell
2013-06-04 18:53:40 +00:00
COMMENT= Bioinformatics library
This is a collection of Haskell data structures and algorithms useful for building bioinformatics-related tools and utilities. Current list of features includes: a Sequence data type supporting protein and nucleotide sequences and conversion between them. WWW: http://blog.malde.org/index.php/the-haskell-bioinformatics-library/ PR: ports/142187 Submitted by: Jacula Modyun <jacula(at)gmail.com>
2010-01-03 05:02:13 +00:00
- Please welcome GHC 7.0.3 GHC in the ports tree has been updated to 7.0.3 and all other Haskell ports are also updated to their corresponding Haskell Platform versions, or latest versions. We would like to acknowledge the support of the FreeBSD Donations Team and Eotvos Lorand University, Faculty of Informatics who contributed to the server that we used for testing. We would also like to thank all the testers who tested FreeBSD Haskell ports and provided their feedback. PR: ports/156642 Approved by: tabthorpe (mentor) Obtained from: FreeBSD Haskell
2011-05-09 05:28:57 +00:00
LICENSE= LGPL21
- Update The Glorious Glasgow Haskell Compiler to version 7.8.3 - Update Haskell Platform to version 2014.2.0.0 - Update Yesod Platform to version 1.2.13 - Update Gtk2Hs to version 0.12.5 - Update Pandoc to version 1.12.4.2 - Update git-annex to version 5.20140717 - Unbreak wxHaskell ports Please note that port revisions for all the Haskell ports without version changes are bumped. New ports (69): databases/hs-esqueleto: Type-safe EDSL for SQL queries on persistent backends devel/hs-Glob: Globbing library devel/hs-STMonadTrans: Monad transformer version of the ST monad devel/hs-auto-update: Efficiently run periodic, on-demand actions devel/hs-asn1-encoding: ASN1 data reader and writer in RAW, BER and DER forms devel/hs-asn1-parse: Simple monadic parser for ASN1 stream types devel/hs-atomic-primops: Safe approach to CAS and other atomic operations devel/hs-boxes: 2D text pretty-printing library devel/hs-byteable: Type class for sequence of bytes devel/hs-chunked-data: Typeclasses for dealing with chunked data devel/hs-conduit-combinators: Commonly used conduit functions devel/hs-conduit-extra: Conduit adapters for common libraries devel/hs-data-hash: Combinators for building fast hashing functions devel/hs-deepseq-generics: Generics-based Control.DeepSeq.rnf implementation devel/hs-dlist-instances: Difference lists instances devel/hs-enclosed-exceptions: Catching exceptions within enclosed computations devel/hs-equivalence: Maintaining equivalence relations as union-find devel/hs-exceptions: Extensible optionally-pure exceptions devel/hs-free: Monads for free devel/hs-hslua: Lua language interpreter embedding in Haskell devel/hs-keys: Keyed functors and containers devel/hs-monad-loops: Monadic loops devel/hs-monads-tf: Monad classes, using type families devel/hs-mono-traversable: Traversing monomorphic containers devel/hs-prelude-extras: Higher-order versions of Prelude classes devel/hs-prettyclass: Pretty printing class similar to Show devel/hs-scientific: Numbers represented using scientific notation devel/hs-securemem: Auto scrubbing and const time eq, memory chunk devel/hs-shake: Build system library, like Make, but more accurate dependencies devel/hs-stm-chans: Additional types of channels for STM devel/hs-streaming-commons: Common functions for streaming data libraries devel/hs-text-icu: Bindings to the ICU library devel/hs-tf-random: High-quality splittable pseudorandom number generator devel/hs-transformers-compat: Compatibility shim for transformers devel/hs-vector-binary-instances: Binary instances for vector devel/hs-vector-instances: Orphan Instances for 'Data.Vector' devel/hs-vector-th-unbox: Deriver for Data.Vector.Unboxed with Template Haskell dns/hs-dns: DNS library in Haskell dns/hs-gnuidn: Bindings for GNU IDN net/hs-connection: Simple and easy network connections API net/hs-gsasl: Bindings for GNU libgsasl net/hs-iproute: IP Routing Table net/hs-network-protocol-xmpp: Client library for the XMPP protocol security/hs-DRBG: Deterministic random bit generator security/hs-cipher-aes128: AES and common modes using AES-NI when available security/hs-cipher-blowfish: Blowfish cipher security/hs-cipher-camellia: Camellia block cipher primitives security/hs-cipher-des: DES and 3DES primitives security/hs-crypto-cipher-types: Generic cryptography cipher types security/hs-crypto-random: Simple cryptographic random related types security/hs-cryptohash-conduit: Cryptohash conduit security/hs-cryptohash-cryptoapi: Crypto-api interfaces for cryptohash security/hs-gnutls: Bindings for GNU libgnutls security/hs-x509: X509 reader and writer security/hs-x509-store: X.509 collection accessing and storing methods security/hs-x509-system: Per-operating-system X.509 accessors and storage security/hs-x509-validation: X.509 Certificate and CRL validation sysutils/hs-ekg: Remote monitoring of processes sysutils/hs-ekg-core: Tracking of system metrics textproc/hs-appar: Simple applicative parser textproc/hs-libxml-sax: Bindings for the libXML2 SAX interface textproc/hs-uri: Library for working with URIs textproc/hs-xml-hamlet: Hamlet-style quasiquoter for XML content www/hs-DAV: RFC 4918 WebDAV support www/hs-http-client: HTTP client engine www/hs-http-client-tls: http-client backend with TLS support www/hs-warp-tls: HTTP over SSL/TLS support for Warp via the TLS package www/hs-yesod-auth-hashdb: Authentication plugin for Yesod www/hs-yesod-bin: Yesod helper executable Updated ports (279): archivers/hs-zip-archive 0.1.3.4_5 --> 0.2.3.2 archivers/hs-zlib-enum 0.2.3_6 --> 0.2.3.1 audio/hs-ALUT 2.2.0.0_14 --> 2.3.0.1 audio/hs-OpenAL 1.4.0.2_5 --> 1.6.0.0 audio/hs-libmpd 0.8.0.2_5 --> 0.8.0.5 benchmarks/hs-criterion 0.6.2.1_6 --> 0.8.1.0 converters/hs-aeson 0.6.1.0_6 --> 0.7.0.6 converters/hs-dataenc 0.14.0.5_5 --> 0.14.0.7 databases/hs-mysql 0.1.1.4_8 --> 0.1.1.6 databases/hs-persistent 1.2.0.1_4 --> 1.3.1.1 databases/hs-persistent-sqlite 1.2.0_4 --> 1.3.0.5 databases/hs-persistent-template 1.2.0_4 --> 1.3.1.4 devel/hs-Boolean 0.2_5 --> 0.2.1 devel/hs-ConfigFile 1.1.1_9 --> 1.1.2 devel/hs-DrIFT 2.2.3_8 --> 2.4.2 devel/hs-MemoTrie 0.6.1_6 --> 0.6.2 devel/hs-MissingH 1.2.0.0_6 --> 1.2.1.0 devel/hs-MonadCatchIO-mtl 0.3.0.5_6 --> 0.3.1.0 devel/hs-MonadCatchIO-transformers 0.3.0.0_8 --> 0.3.1.0 devel/hs-MonadRandom 0.1.9_4 --> 0.1.13 devel/hs-SafeSemaphore 0.9.0_6 --> 0.10.1 devel/hs-Stream 0.4.6.1_6 --> 0.4.7.1 devel/hs-TypeCompose 0.9.9_5 --> 0.9.10 devel/hs-abstract-deque 0.2_4 --> 0.3 devel/hs-abstract-par 0.3.1_8 --> 0.3.3 devel/hs-alex 3.0.5_4 --> 3.1.3 devel/hs-ansi-terminal 0.6_5 --> 0.6.1.1 devel/hs-ansi-wl-pprint 0.6.6_6 --> 0.6.7.1 devel/hs-asn1-types 0.1.3_4 --> 0.2.3 devel/hs-async 2.0.1.4_4 --> 2.0.1.5 devel/hs-base16-bytestring 0.1.1.5_7 --> 0.1.1.6 devel/hs-basic-prelude 0.3.5.0_4 --> 0.3.8 devel/hs-bifunctors 3.2.0.1_5 --> 4.1.1.1 devel/hs-blaze-builder 0.3.1.1_4 --> 0.3.3.2 devel/hs-blaze-builder-enumerator 0.2.0.5_6 --> 0.2.0.6 devel/hs-blaze-textual 0.2.0.8_6 --> 0.2.0.9 devel/hs-bloomfilter 1.2.6.10_7 --> 2.0.0.0 devel/hs-bytestring-show 0.3.5.5_4 --> 0.3.5.6 devel/hs-c2hs 0.16.4_6 --> 0.17.2 devel/hs-cabal-install 1.16.0.2_4 --> 1.18.0.5 devel/hs-cereal 0.3.5.2_7 --> 0.4.0.1 devel/hs-checkers 0.3.1_5 --> 0.3.2 devel/hs-classy-prelude 0.5.7_4 --> 0.9.3 devel/hs-classy-prelude-conduit 0.5.3_5 --> 0.9.3 devel/hs-cmdargs 0.10.3_4 --> 0.10.9 devel/hs-conduit 1.0.5_4 --> 1.1.7 devel/hs-configurator 0.2.0.2_6 --> 0.3.0.0 devel/hs-convertible 1.0.11.1_8 --> 1.1.0.0 devel/hs-cpphs 1.16_5 --> 1.18.5 devel/hs-data-pprint 0.2.1.4_6 --> 0.2.3 devel/hs-directory-tree 0.11.0_6 --> 0.12.0 devel/hs-dlist 0.5_13 --> 0.7.1 devel/hs-either 3.4_5 --> 4.3.0.1 devel/hs-enumerator 0.4.19_8 --> 0.4.20 devel/hs-errors 1.4.1_5 --> 1.4.7 devel/hs-fast-logger 0.3.1_7 --> 2.2.0 devel/hs-fgl 5.4.2.4_9 --> 5.5.0.1 devel/hs-file-embed 0.0.4.7_5 --> 0.0.7 devel/hs-filestore 0.6.0.1_5 --> 0.6.0.3 devel/hs-fsnotify 0.0.11_4 --> 0.1.0.3 devel/hs-gconf 0.12.1.1_6 --> 0.12.5.0 devel/hs-generic-deriving 1.5.0_4 --> 1.6.3 devel/hs-geniplate 0.6.0.3_5 --> 0.6.0.4 devel/hs-ghc-events 0.4.2.0_6 --> 0.4.3.0 devel/hs-ghc-mtl 1.0.1.2_6 --> 1.2.1.0 devel/hs-gio 0.12.4_6 --> 0.12.5.3 devel/hs-glade 0.12.1_10 --> 0.12.5.0 devel/hs-glib 0.12.4_6 --> 0.12.5.4 devel/hs-gtk2hs-buildtools 0.12.4_6 --> 0.12.5.2 devel/hs-haddock 2.13.2_4 --> 2.14.2 devel/hs-happy 1.18.10_6 --> 1.19.4 devel/hs-hashable 1.1.2.5_4,1 --> 1.2.2.0,1 devel/hs-hashed-storage 0.5.10_6 --> 0.5.11 devel/hs-hashtables 1.1.0.2_5 --> 1.1.2.1 devel/hs-haskell-src 1.0.1.5_8 --> 1.0.1.6 devel/hs-haskell-src-exts 1.13.5_6 --> 1.15.0.1 devel/hs-hasktags 0.68.2_5 --> 0.69.0 devel/hs-hastache 0.5.0_5 --> 0.6.0 devel/hs-hinotify 0.3.5_6 --> 0.3.7 devel/hs-hint 0.3.3.6_5 --> 0.4.2.0 devel/hs-hlint 1.8.45_4 --> 1.9.3 devel/hs-hoogle 4.2.16_5 --> 4.2.34 devel/hs-hslogger 1.2.1_6 --> 1.2.4 devel/hs-hspec 1.5.4_4 --> 1.11.0 devel/hs-hspec-expectations 0.3.2_4 --> 0.6.0.1 devel/hs-kqueue 0.1.2.4_6 --> 0.1.2.6 devel/hs-language-c 0.3.2.1_11 --> 0.4.5 devel/hs-language-javascript 0.5.7_6 --> 0.5.13 devel/hs-largeword 1.0.5_4 --> 1.2.3 devel/hs-lens 3.9.0.2_4 --> 4.3.3 devel/hs-lifted-base 0.2.0.5_4 --> 0.2.3.0 devel/hs-logict 0.6_5 --> 0.6.0.2 devel/hs-mmap 0.5.8_7 --> 0.5.9 devel/hs-mmorph 1.0.0_4 --> 1.0.3 devel/hs-monad-control 0.3.2.1_4 --> 0.3.3.0 devel/hs-monad-logger 0.3.1.1_4 --> 0.3.7.1 devel/hs-monad-par 0.3.4.2_4 --> 0.3.4.6 devel/hs-monad-par-extras 0.3.2_8 --> 0.3.3 devel/hs-mtl 2.1.2_6 --> 2.1.3.1 devel/hs-mueval 0.9_5 --> 0.9.1.1 devel/hs-murmur-hash 0.1.0.6_6 --> 0.1.0.7 devel/hs-optparse-applicative 0.5.2.1_5 --> 0.9.1.1 devel/hs-parallel 3.2.0.3_6 --> 3.2.0.4 devel/hs-pcre-light 0.4_13 --> 0.4.0.2 devel/hs-primitive 0.5.0.1_6 --> 0.5.2.1 devel/hs-profunctors 3.3.0.1_4 --> 4.2.0.1 devel/hs-project-template 0.1.3_5 --> 0.1.4.1 devel/hs-quickcheck-io 0.1.0_4 --> 0.1.1 devel/hs-reflection 1.3.2_4 --> 1.5.1 devel/hs-resource-pool 0.2.1.1_6 --> 0.2.3.0 devel/hs-resourcet 0.4.7.1_4 --> 1.1.2.3 devel/hs-safe 0.3.3_9 --> 0.3.7 devel/hs-setenv 0.1.0_6 --> 0.1.1.1 devel/hs-simple-reflect 0.3.1_5 --> 0.3.2 devel/hs-smallcheck 1.0.2_5 --> 1.1.1 devel/hs-syb 0.4.0_4 --> 0.4.1 devel/hs-syb-with-class 0.6.1.4_6 --> 0.6.1.5 devel/hs-system-fileio 0.3.11_5 --> 0.3.14 devel/hs-system-filepath 0.4.7_6 --> 0.4.12 devel/hs-tagged 0.6_4 --> 0.7.2 devel/hs-temporary 1.1.2.4_6 --> 1.2.0.3 devel/hs-test-framework 0.8_7 --> 0.8.0.3 devel/hs-test-framework-hunit 0.3.0_7 --> 0.3.0.1 devel/hs-test-framework-quickcheck2 0.3.0.1_7 --> 0.3.0.3 devel/hs-text 0.11.3.1_4 --> 1.1.0.0 devel/hs-threads 0.5.0.2_5 --> 0.5.1.2 devel/hs-threadscope 0.2.2_6 --> 0.2.4 devel/hs-timezone-olson 0.1.2_5 --> 0.1.4 devel/hs-timezone-series 0.1.2_5 --> 0.1.3 devel/hs-transformers-base 0.4.1_9 --> 0.4.2 devel/hs-uniplate 1.6.10_6 --> 1.6.12 devel/hs-unix-compat 0.4.1.1_4 --> 0.4.1.3 devel/hs-unix-time 0.1.8_4 --> 0.3.3 devel/hs-unordered-containers 0.2.3.1_4 --> 0.2.4.0 devel/hs-utf8-light 0.4.0.1_8 --> 0.4.2 devel/hs-utf8-string 0.3.7_9 --> 0.3.8 devel/hs-utility-ht 0.0.9_4 --> 0.0.10 devel/hs-uuagc 0.9.42.3_4 --> 0.9.51 devel/hs-uuagc-cabal 1.0.4.0_7 --> 1.0.5.0 devel/hs-uuid 1.2.13_4 --> 1.3.3 devel/hs-uulib 0.9.15_5 --> 0.9.16 devel/hs-vault 0.2.0.4_5 --> 0.3.0.3 devel/hs-vector 0.10.0.1_6 --> 0.10.9.1 devel/hs-vector-algorithms 0.5.4.2_6 --> 0.6.0.3 devel/hs-void 0.6_4 --> 0.6.1 devel/hs-word8 0.0.3_5 --> 0.1.1 graphics/hs-HGL 3.2.0.2_14 --> 3.2.0.5 graphics/hs-cairo 0.12.4_6 --> 0.12.5.3 graphics/hs-svgcairo 0.12.1.1_8 --> 0.12.5.2 mail/hs-email-validate 1.0.0_5 --> 2.0.1 mail/hs-mime 0.3.4_6 --> 0.4.0.1 mail/hs-mime-mail 0.4.1.2_7 --> 0.4.5.2 mail/hs-mime-types 0.1.0.3_5 --> 0.1.0.4 math/hs-Agda 2.3.2_6 --> 2.4.0.2 math/hs-categories 1.0.5_5 --> 1.0.6 math/hs-comonad 3.0.2_5 --> 4.2.2 math/hs-contravariant 0.4_5 --> 1.1 math/hs-data-lens 2.10.2_7 --> 2.10.5 math/hs-data-lens-template 2.1.7_7 --> 2.1.8 math/hs-distributive 0.3.1_5 --> 0.4.4 math/hs-math-functions 0.1.3.0_5 --> 0.1.5.2 math/hs-mwc-random 0.12.0.1_6 --> 0.13.1.2 math/hs-nats 0.1_5 --> 0.2 math/hs-pointed 3.0.2_6 --> 4.1 math/hs-probability 0.2.4_8 --> 0.2.4.1 math/hs-semigroupoids 3.0.2_6 --> 4.0.4 math/hs-semigroups 0.9.1_4 --> 0.15.2 math/hs-statistics 0.10.3.1_4 --> 0.13.2.1 math/hs-vector-space 0.8.6_7 --> 0.8.7 multimedia/hs-gstreamer 0.12.1.2_6 --> 0.12.5.0 net/hs-network 2.4.1.2_4 --> 2.4.2.3 net/hs-network-info 0.2.0.3_6 --> 0.2.0.5 net/hs-network-multicast 0.0.7_6 --> 0.0.11 net/hs-simple-sendfile 0.2.11_5 --> 0.2.15 net/hs-socks 0.5.1_4 --> 0.5.4 science/hs-bio 0.5.2_8 --> 0.5.3 security/hs-HsOpenSSL 0.10.3.3_6 --> 0.11 security/hs-RSA 1.2.2.0_7 --> 2.0.0 security/hs-SHA 1.6.1_6 --> 1.6.4.1 security/hs-certificate 1.3.7_4 --> 1.3.9 security/hs-cipher-aes 0.1.8_4 --> 0.2.8 security/hs-cipher-rc4 0.1.2_5 --> 0.1.4 security/hs-clientsession 0.9_4 --> 0.9.0.3 security/hs-cprng-aes 0.3.4_6 --> 0.5.2 security/hs-crypto-api 0.12.1_4 --> 0.13 security/hs-crypto-conduit 0.5.2_4 --> 0.5.4 security/hs-crypto-numbers 0.1.3_5 --> 0.2.3 security/hs-crypto-pubkey 0.1.3_4 --> 0.2.4 security/hs-crypto-pubkey-types 0.3.2_4 --> 0.4.2.2 security/hs-cryptocipher 0.5.0_4 --> 0.6.2 security/hs-cryptohash 0.9.0_4 --> 0.11.6 security/hs-entropy 0.2.1_9 --> 0.3.2 security/hs-monadcryptorandom 0.5.1_5 --> 0.6.1 security/hs-pem 0.1.2_6 --> 0.2.2 security/hs-pwstore-fast 2.3_7 --> 2.4.1 security/hs-skein 1.0.3_4 --> 1.0.9 security/hs-tls 1.1.2_5 --> 1.2.8 sysutils/hs-angel 0.3.4_6 --> 0.5.0 sysutils/hs-cpu 0.1.1_7 --> 0.1.2 textproc/hs-Diff 0.2.0_5 --> 0.3.0 textproc/hs-HStringTemplate 0.7.1_5 --> 0.7.3 textproc/hs-HaXml 1.24_4 --> 1.24.1 textproc/hs-attoparsec-enumerator 0.3.1_7 --> 0.3.3 textproc/hs-blaze-html 0.6.1.1_4 --> 0.7.0.2 textproc/hs-blaze-markup 0.5.1.5_4 --> 0.6.1.0 textproc/hs-case-insensitive 1.0.0.2_4 --> 1.1.0.3 textproc/hs-citeproc-hs 0.3.8_5 --> 0.3.9 textproc/hs-feed 0.3.8_13 --> 0.3.9.2 textproc/hs-hexpat 0.20.3_6 --> 0.20.6 textproc/hs-highlighting-kate 0.5.3.9_4 --> 0.5.8.5 textproc/hs-html-conduit 1.1.0_5 --> 1.1.0.5 textproc/hs-hxt 9.3.1.1_7 --> 9.3.1.4 textproc/hs-hxt-charproperties 9.1.1_9 --> 9.1.1.1 textproc/hs-hxt-unicode 9.0.2_9 --> 9.0.2.2 textproc/hs-pandoc-types 1.10_5 --> 1.12.4.1 textproc/hs-parsec 3.1.3_6 --> 3.1.5 textproc/hs-regex-pcre-builtin 0.94.4.5.8.31_5 --> 0.94.4.8.8.35 textproc/hs-regex-tdfa 1.1.8_5 --> 1.2.0 textproc/hs-stringsearch 0.3.6.4_6 --> 0.3.6.5 textproc/hs-tagsoup 0.12.8_6 --> 0.13.1 textproc/hs-tagstream-conduit 0.5.4_5 --> 0.5.5.1 textproc/hs-texmath 0.6.1.5_4 --> 0.6.7 textproc/hs-xml-conduit 1.1.0.3_5 --> 1.2.1 textproc/hs-xml-types 0.3.3_6 --> 0.3.4 textproc/hs-xmlhtml 0.2.1_5 --> 0.2.3.2 textproc/hs-yaml 0.8.2.4_4 --> 0.8.8.4 www/hs-HTTP 4000.2.8_4 --> 4000.2.10 www/hs-authenticate 1.3.2.6_5 --> 1.3.2.9 www/hs-cgi 3001.1.7.5_4,1 --> 3001.1.8.5,1 www/hs-cookie 0.4.0.1_6 --> 0.4.1.2 www/hs-css-text 0.1.1_10 --> 0.1.2.1 www/hs-gitit 0.10.3.1_5 --> 0.10.4 www/hs-hS3 0.5.7_5 --> 0.5.8 www/hs-happstack 7.0.1_7 --> 7.0.2 www/hs-happstack-server 7.1.7.1_4 --> 7.3.7 www/hs-heist 0.12.0_4 --> 0.13.1.2 www/hs-hjsmin 0.1.4.1_5 --> 0.1.4.7 www/hs-http-conduit 1.9.3_4 --> 2.1.4 www/hs-http-reverse-proxy 0.1.1.6_4 --> 0.4.0.1 www/hs-http-server 1.0.2_5 --> 1.0.4 www/hs-http-types 0.8.0_5 --> 0.8.5 www/hs-oeis 0.3.1_10 --> 0.3.5 www/hs-path-pieces 0.1.2_6 --> 0.1.4 www/hs-recaptcha 0.1_9 --> 0.1.0.2 www/hs-shakespeare 1.0.5_4 --> 2.0.1.1 www/hs-snap 0.12.0_4 --> 0.13.2.8 www/hs-snap-core 0.9.3.1_5 --> 0.9.6.3 www/hs-snap-server 0.9.3.3_5 --> 0.9.4.5 www/hs-wai 1.4.0_5 --> 3.0.1.1 www/hs-wai-app-static 1.3.1.2_5 --> 3.0.0 www/hs-wai-extra 1.3.4_4 --> 3.0.1.2 www/hs-wai-logger 0.3.0_7 --> 2.2.0 www/hs-warp 1.3.8.1_4 --> 3.0.0.5 www/hs-webkit 0.12.4_8 --> 0.12.6.1 www/hs-xss-sanitize 0.3.3_6 --> 0.3.5.2 www/hs-yesod 1.2.0.1_4 --> 1.2.6.1 www/hs-yesod-auth 1.2.0_4 --> 1.3.4 www/hs-yesod-core 1.2.0.4_4 --> 1.2.19 www/hs-yesod-form 1.3.0_4 --> 1.3.14 www/hs-yesod-persistent 1.2.0_4 --> 1.2.3 www/hs-yesod-routes 1.2.0_4 --> 1.2.0.7 www/hs-yesod-static 1.2.0_4 --> 1.2.4 www/hs-yesod-test 1.2.0_4 --> 1.2.3.2 x11-toolkits/hs-GLURaw 1.3.0.0_4 --> 1.4.0.1 x11-toolkits/hs-GLUT 2.4.0.0_5,1 --> 2.5.1.1,1 x11-toolkits/hs-OpenGL 2.8.0.0_4,1 --> 2.9.2.0,1 x11-toolkits/hs-OpenGLRaw 1.3.0.0_5 --> 1.5.0.0 x11-toolkits/hs-gtk 0.12.4_6 --> 0.12.5.7 x11-toolkits/hs-gtkglext 0.12.1_10 --> 0.12.5.0 x11-toolkits/hs-gtksourceview2 0.12.3.1_8 --> 0.12.5.0 x11-toolkits/hs-pango 0.12.4_6 --> 0.12.5.3 x11-toolkits/hs-vte 0.12.1_10 --> 0.12.5.0 x11-toolkits/hs-wx 0.90.0.1_8 --> 0.90.1.0 x11-toolkits/hs-wxc 0.90.0.4_7 --> 0.90.1.1 x11-toolkits/hs-wxcore 0.90.0.3_7 --> 0.90.1.1 x11-toolkits/hs-wxdirect 0.90.0.1_8 --> 0.90.1.1 x11-wm/hs-xmonad-contrib 0.11.1_6 --> 0.11.3 x11/hs-X11 1.6.1.1_6 --> 1.6.1.2 x11/hs-xmobar 0.17_4 --> 0.21 Removed ports (28): archivers/hs-zlib-conduit: Deprecated in favor of conduit-extra devel/hs-IORefCAS: Deprecated in favor of atomic-primops devel/hs-StateVar: Deprecated devel/hs-Tensor: Depcrecated devel/hs-attempt: Deprecated in favor of exceptions devel/hs-base64-conduit: Deprecated in favor of conduit-combinators devel/hs-blaze-builder-conduit: Deprecated in favor of conduit-extra devel/hs-failure: Deprecated in favor or exceptions devel/hs-filesystem-conduit: Deprecated in favor of conduit-combinators devel/hs-haskeline: Become part of GHC devel/hs-pool-conduit: Deprecated in favor of resource-pool devel/hs-profunctor-extras: Absorbed into profunctors devel/hs-terminfo: Become part of GHC devel/hs-transformers: Become part of GHC math/hs-comonad-transformers: Deprecated in favor of comonad math/hs-comonads-fd: Deprecated in favor of comonad math/hs-groupoids: Deprecated in favor of semigroupoids math/hs-semigroupoid-extras: Deprecated in favor of semigroupoids net/hs-network-conduit: Deprecated in favor of conduit-extra security/hs-tls-extra: Deprecated in favor of tls textproc/hs-attoparsec-conduit: Deprecated in favor of conduit-extra textproc/hs-xhtml: Become part of GHC www/hs-hamlet: Deprecated in favor of shakespeare www/hs-shakespeare-css: Deprecated in favor of shakespeare www/hs-shakespeare-i18n: Deprecated in favor of shakespeare www/hs-shakespeare-js: Deprecated in favor of shakespeare www/hs-shakespeare-text: Deprecated in favor of shakespeare www/hs-wai-test: Deprecated in favor of wai-extra Approved by: portmgr (implicit, touching unstaged ports) Obtained from: FreeBSD Haskell
2014-08-10 22:34:50 +00:00
USE_CABAL= mtl parallel parsec QuickCheck>=2 random tagsoup>=0.8
- Update to 0.5.2 Obtained from: FreeBSD Haskell
2012-06-03 22:21:27 +00:00
EXECUTABLE= fastout flowclip flx frecover frename orf rselect-pe
This is a collection of Haskell data structures and algorithms useful for building bioinformatics-related tools and utilities. Current list of features includes: a Sequence data type supporting protein and nucleotide sequences and conversion between them. WWW: http://blog.malde.org/index.php/the-haskell-bioinformatics-library/ PR: ports/142187 Submitted by: Jacula Modyun <jacula(at)gmail.com>
2010-01-03 05:02:13 +00:00
Introduce a new (and hopefully better) ports infrastructure for Haskell Cabal ports which makes possible the direct translation of Cabal package descriptions to FreeBSD ports. It promises both easier addition and maintenance for Cabal-based ports.
2010-05-12 16:33:59 +00:00
.include "${.CURDIR}/../../lang/ghc/bsd.cabal.mk"
This is a collection of Haskell data structures and algorithms useful for building bioinformatics-related tools and utilities. Current list of features includes: a Sequence data type supporting protein and nucleotide sequences and conversion between them. WWW: http://blog.malde.org/index.php/the-haskell-bioinformatics-library/ PR: ports/142187 Submitted by: Jacula Modyun <jacula(at)gmail.com>
2010-01-03 05:02:13 +00:00
.include <bsd.port.mk>
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