From 00b0c72489152ddd8766b48e2e82efbbc841c96a Mon Sep 17 00:00:00 2001
From: Adam Weinberger <adamw@FreeBSD.org>
Date: Fri, 15 Aug 2014 16:37:37 +0000
Subject: [PATCH] Fix build on -current by un-clobbering LDFLAGS. Also, don't
 mute installation commands.

---
 biology/mrbayes/Makefile             |  4 ++--
 biology/mrbayes/files/patch-Makefile | 13 +++++++++++--
 2 files changed, 13 insertions(+), 4 deletions(-)

diff --git a/biology/mrbayes/Makefile b/biology/mrbayes/Makefile
index ffdc52d736ad..51ac13fd745f 100644
--- a/biology/mrbayes/Makefile
+++ b/biology/mrbayes/Makefile
@@ -20,10 +20,10 @@ PORTEXAMPLES=	adh.nex anolis.nex avian_ovomucoids.nex bglobin.nex \
 		cynmix.nex kim.nex primates.nex replicase.nex
 
 do-install:
-	@${INSTALL_PROGRAM} ${WRKSRC}/mb ${STAGEDIR}${PREFIX}/bin/
+	${INSTALL_PROGRAM} ${WRKSRC}/mb ${STAGEDIR}${PREFIX}/bin/
 	@${MKDIR} ${STAGEDIR}${EXAMPLESDIR}
 .for file in ${PORTEXAMPLES}
-	@${INSTALL_DATA} ${WRKSRC}/${file} ${STAGEDIR}${EXAMPLESDIR}
+	${INSTALL_DATA} ${WRKSRC}/${file} ${STAGEDIR}${EXAMPLESDIR}
 .endfor
 
 .include <bsd.port.mk>
diff --git a/biology/mrbayes/files/patch-Makefile b/biology/mrbayes/files/patch-Makefile
index eb99e4b74905..afa3b9c35d87 100644
--- a/biology/mrbayes/files/patch-Makefile
+++ b/biology/mrbayes/files/patch-Makefile
@@ -1,5 +1,5 @@
---- Makefile.orig	2005-12-23 01:13:06.000000000 +0900
-+++ Makefile	2007-12-11 11:35:36.000000000 +0900
+--- Makefile.orig	2005-12-22 11:13:06.000000000 -0500
++++ Makefile	2014-08-15 12:36:02.000000000 -0400
 @@ -19,7 +19,7 @@
  
  # set compiler for the non-MPI version (mpicc will be used for the MPI
@@ -9,3 +9,12 @@
  
  # set to yes if you want to use the readline library (make sure you have it
  # installed on your machine)
+@@ -67,7 +67,7 @@
+ 
+ LIBS     +=   -lm
+ 
+-LDFLAGS  =   $(CFLAGS)
++LDFLAGS  +=   $(CFLAGS)
+ LDLIBS   =   $(LIBS)
+ 
+ OBJECTS   =   bayes.o command.o mbmath.o mcmc.o model.o plot.o sump.o sumt.o