From 324d0273f590995b10c92008d0dc4fa5889ea0a5 Mon Sep 17 00:00:00 2001 From: Yuri Victorovich Date: Sun, 16 Jun 2024 16:04:09 -0700 Subject: [PATCH] =?UTF-8?q?biology/py-gffutils:=20update=200.11.1=20?= =?UTF-8?q?=E2=86=92=200.13?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- biology/py-gffutils/Makefile | 10 ++++++++-- biology/py-gffutils/distinfo | 6 +++--- 2 files changed, 11 insertions(+), 5 deletions(-) diff --git a/biology/py-gffutils/Makefile b/biology/py-gffutils/Makefile index d7a3a74860a9..bf0a0a44ef14 100644 --- a/biology/py-gffutils/Makefile +++ b/biology/py-gffutils/Makefile @@ -1,5 +1,5 @@ PORTNAME= gffutils -DISTVERSION= 0.11.1 +DISTVERSION= 0.13 CATEGORIES= biology python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} @@ -17,8 +17,14 @@ RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}argcomplete>=1.9.4:devel/py-argcomplete@${PY ${PYTHON_PKGNAMEPREFIX}six>=1.12.0:devel/py-six@${PY_FLAVOR} USES= python -USE_PYTHON= distutils concurrent autoplist pytest # tests use nose and therefore don't work, see https://github.com/daler/gffutils/issues/211 +USE_PYTHON= distutils concurrent autoplist pytest + +TEST_ENV= ${MAKE_ENV} \ + PATH=${STAGEDIR}${PREFIX}/bin:${PATH} \ + PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} NO_ARCH= yes +# 1 test (test_roundtrip) fails, see test_roundtrip + .include diff --git a/biology/py-gffutils/distinfo b/biology/py-gffutils/distinfo index 87aef9733a5d..e5a11a3fb3cf 100644 --- a/biology/py-gffutils/distinfo +++ b/biology/py-gffutils/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1678604359 -SHA256 (gffutils-0.11.1.tar.gz) = ca7bf814d600b389bb2d5c403dd279755118cb1476c19c6f7aecb8c51a84263c -SIZE (gffutils-0.11.1.tar.gz) = 1553140 +TIMESTAMP = 1718571181 +SHA256 (gffutils-0.13.tar.gz) = b0d52f35c014cc0330fb5c4e3c6fea127c90ccf4c5384a825cdb5c8ff330d4eb +SIZE (gffutils-0.13.tar.gz) = 1560489