diff --git a/MOVED b/MOVED index db3fbe463fe5..61a6c4470696 100644 --- a/MOVED +++ b/MOVED @@ -3951,3 +3951,4 @@ java/jdk16|java/openjdk6|2012-12-10|Has expired: Outdated, consider using openjd java/linux-sun-jre15|java/linux-sun-jre16|2012-12-10|Has expired: EOLed upstream since october 2009 java/linux-sun-jdk15|java/linux-sun-jdk16|2012-12-10|Has expired: EOLed upstream since october 2009 java/jdk15-doc|java/jdk16-doc|2012-12-10|Has expired: EOLed upstream since october 2009 +science/py-openbabel||2012-12-11|Merged to science/openbabel diff --git a/biology/xdrawchem/Makefile b/biology/xdrawchem/Makefile index 08b2c216aa3d..9e71f8e1c884 100644 --- a/biology/xdrawchem/Makefile +++ b/biology/xdrawchem/Makefile @@ -7,14 +7,14 @@ PORTNAME= xdrawchem PORTVERSION= 1.9.9 -PORTREVISION= 10 +PORTREVISION= 11 CATEGORIES= biology MASTER_SITES= SF MAINTAINER= hemi@puresimplicity.net COMMENT= Chemical drawing program -LIB_DEPENDS= openbabel.3:${PORTSDIR}/science/openbabel +LIB_DEPENDS= openbabel:${PORTSDIR}/science/openbabel GNU_CONFIGURE= yes USE_GMAKE= yes diff --git a/biology/xdrawchem/files/patch-xdrawchem__application_ob.cpp b/biology/xdrawchem/files/patch-xdrawchem__application_ob.cpp new file mode 100644 index 000000000000..493499d74c7c --- /dev/null +++ b/biology/xdrawchem/files/patch-xdrawchem__application_ob.cpp @@ -0,0 +1,11 @@ +--- ./xdrawchem/application_ob.cpp.orig 2005-11-30 03:47:14.000000000 +0000 ++++ ./xdrawchem/application_ob.cpp 2012-10-30 14:37:35.092762310 +0000 +@@ -87,7 +87,7 @@ + OBFormat *inFormat = NULL; + + if (infilter.left(2) == "--") { +- inFormat = Conv.FormatFromExt(infile); ++ inFormat = Conv.FormatFromExt(infile.ascii()); + if (inFormat == NULL) { + QMessageBox::warning( 0, tr("Could not determine file type"), + tr("Please select a file type from the list.") ); diff --git a/science/Makefile b/science/Makefile index e2f5f032c199..f40f3206d6f4 100644 --- a/science/Makefile +++ b/science/Makefile @@ -166,7 +166,6 @@ SUBDIR += py-obspy.taup SUBDIR += py-obspy.wav SUBDIR += py-obspy.xseed - SUBDIR += py-openbabel SUBDIR += py-paida SUBDIR += py-pydicom SUBDIR += py-scikit-learn diff --git a/science/avogadro/Makefile b/science/avogadro/Makefile index 4e138a50948a..47e78bf71778 100644 --- a/science/avogadro/Makefile +++ b/science/avogadro/Makefile @@ -3,7 +3,7 @@ PORTNAME= avogadro PORTVERSION= 1.0.3 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= science MASTER_SITES= SF @@ -11,7 +11,7 @@ MAINTAINER= tkjacobsen@gmail.com COMMENT= Advanced molecular editor and viewer BUILD_DEPENDS= ${LOCALBASE}/libdata/pkgconfig/eigen2.pc:${PORTSDIR}/math/eigen2 -LIB_DEPENDS= openbabel.3:${PORTSDIR}/science/openbabel +LIB_DEPENDS= openbabel:${PORTSDIR}/science/openbabel USE_LDCONFIG= yes USE_BZIP2= yes diff --git a/science/gchemutils/Makefile b/science/gchemutils/Makefile index 387a86ee703c..d6ea8189b167 100644 --- a/science/gchemutils/Makefile +++ b/science/gchemutils/Makefile @@ -7,7 +7,7 @@ PORTNAME= gchemutils PORTVERSION= 0.12.10 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= science MASTER_SITES= ${MASTER_SITE_SAVANNAH} MASTER_SITE_SUBDIR= ${PORTNAME}/0.12 @@ -17,7 +17,7 @@ MAINTAINER= kwm@FreeBSD.org COMMENT= C++ classes and Gtk2 widgets related to chemistry LIB_DEPENDS= gtkglext-x11-1.0.0:${PORTSDIR}/x11-toolkits/gtkglext \ - openbabel.3:${PORTSDIR}/science/openbabel \ + openbabel:${PORTSDIR}/science/openbabel \ goffice-0.8.8:${PORTSDIR}/devel/goffice BUILD_DEPENDS= ${LOCALBASE}/libdata/pkgconfig/bodr.pc:${PORTSDIR}/science/bodr \ ${LOCALBASE}/libdata/pkgconfig/chemical-mime-data.pc:${PORTSDIR}/science/chemical-mime-data diff --git a/science/ghemical/Makefile b/science/ghemical/Makefile index 2c32bdbe0176..ac6dc50bf50d 100644 --- a/science/ghemical/Makefile +++ b/science/ghemical/Makefile @@ -6,7 +6,7 @@ PORTNAME= ghemical PORTVERSION= 2.99.2 -PORTREVISION= 4 +PORTREVISION= 5 CATEGORIES= science MASTER_SITES= http://www.uku.fi/~thassine/projects/download/release20090911/ \ http://bioinformatics.org/ghemical/download/ @@ -15,7 +15,7 @@ MAINTAINER= maho@FreeBSD.org COMMENT= Ghemical is a computational chemistry software package BUILD_DEPENDS= f2c:${PORTSDIR}/lang/f2c \ - openbabel:${PORTSDIR}/science/openbabel \ + obabel:${PORTSDIR}/science/openbabel \ ld:${PORTSDIR}/devel/binutils RUN_DEPENDS= f2c:${PORTSDIR}/lang/f2c LIB_DEPENDS= mpqc:${PORTSDIR}/science/mpqc \ diff --git a/science/kalzium/Makefile b/science/kalzium/Makefile index 26be80628373..32bb8ed5021a 100644 --- a/science/kalzium/Makefile +++ b/science/kalzium/Makefile @@ -7,6 +7,7 @@ PORTNAME= kalzium PORTVERSION= ${KDE4_VERSION} +PORTREVISION= 1 CATEGORIES= science kde MASTER_SITES= ${MASTER_SITE_KDE} MASTER_SITE_SUBDIR= ${KDE4_BRANCH}/${PORTVERSION}/src @@ -15,8 +16,8 @@ DIST_SUBDIR= KDE MAINTAINER= kde@FreeBSD.org COMMENT= Periodic table of elements for KDE 4 -LIB_DEPENDS= openbabel.3:${PORTSDIR}/science/openbabel \ - avogadro.1:${PORTSDIR}/science/avogadro +LIB_DEPENDS= openbabel:${PORTSDIR}/science/openbabel \ + avogadro:${PORTSDIR}/science/avogadro BUILD_DEPENDS= ${LOCALBASE}/libdata/pkgconfig/eigen2.pc:${PORTSDIR}/math/eigen2 \ ${LOCALBASE}/lib/ocaml/facile/facile.a:${PORTSDIR}/math/facile diff --git a/science/libghemical/Makefile b/science/libghemical/Makefile index 9a1b5716490c..eab96b246daf 100644 --- a/science/libghemical/Makefile +++ b/science/libghemical/Makefile @@ -6,7 +6,7 @@ PORTNAME= libghemical PORTVERSION= 2.99.1 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= science MASTER_SITES= http://www.uku.fi/~thassine/projects/download/release20090911/ \ http://bioinformatics.org/ghemical/download/ @@ -14,7 +14,7 @@ MASTER_SITES= http://www.uku.fi/~thassine/projects/download/release20090911/ \ MAINTAINER= maho@FreeBSD.org COMMENT= Support libraries of science/ghemical port -BUILD_DEPENDS= openbabel:${PORTSDIR}/science/openbabel \ +BUILD_DEPENDS= obabel:${PORTSDIR}/science/openbabel \ mopac7:${PORTSDIR}/biology/mopac \ intltool-update:${PORTSDIR}/textproc/intltool \ ld:${PORTSDIR}/devel/binutils diff --git a/science/openbabel/Makefile b/science/openbabel/Makefile index 99c80626a1a3..f373a784adb3 100644 --- a/science/openbabel/Makefile +++ b/science/openbabel/Makefile @@ -1,45 +1,73 @@ -# ex:ts=8 -# Ports collection makefile for: openbabel -# Date created: Jan 5, 2003 -# Whom: ijliao -# +# Created by: ijliao # $FreeBSD$ -# PORTNAME= openbabel -PORTVERSION= 2.2.3 +PORTVERSION= 2.3.2 CATEGORIES= science MASTER_SITES= SF MAINTAINER= makc@FreeBSD.org COMMENT= Chemistry file translation program -LIB_DEPENDS= boost_python.4:${PORTSDIR}/devel/boost-python-libs +BUILD_DEPENDS= ${LOCALBASE}/include/eigen3/Eigen/Eigen:${PORTSDIR}/math/eigen3 -USE_GNOME= gnomehack libxml2 -USE_AUTOTOOLS= libtool +CONFLICTS_INSTALL= babel-* + +USE_GNOME= libxml2 +USE_CMAKE= yes +CMAKE_ARGS= -DBUILD_GUI=off +CMAKE_OUTSOURCE= yes USE_LDCONFIG= yes +MAKE_JOBS_SAFE= yes -MAN1= obchiral.1 obconformer.1 obenergy.1 obfit.1 obgen.1 obgrep.1 \ - obminimize.1 obprobe.1 obprop.1 obrotamer.1 obrotate.1 \ - openbabel.1 roundtrip.1 +MAN1= babel.1 \ + obabel.1 \ + obchiral.1 \ + obconformer.1 \ + obenergy.1 \ + obfit.1 \ + obgen.1 \ + obgrep.1 \ + obgui.1 \ + obminimize.1 \ + obprobe.1 \ + obprop.1 \ + obrotamer.1 \ + obrotate.1 \ + obspectrophore.1 \ + roundtrip.1 PLIST_SUB= VERSION="${PORTVERSION}" -MAKE_JOBS_SAFE= yes +OPTIONS_DEFINE= CAIRO PYTHON +OPTIONS_DEFAULT= PYTHON +CAIRO_DESC= PNG support via cairo library -.include +.include -post-extract: - @${LN} -sf babel.1 ${WRKSRC}/doc/openbabel.1 +.if ${PORT_OPTIONS:MCAIRO} +LIB_DEPENDS+= cairo:${PORTSDIR}/graphics/cairo +PLIST_SUB+= CAIRO="" +.else +PLIST_SUB+= CAIRO="@comment " +.endif + +.if ${PORT_OPTIONS:MPYTHON} +USE_PYTHON= yes +CMAKE_ARGS+= -DPYTHON_BINDINGS=on +PLIST_SUB+= PYTHON="" +.else +PLIST_SUB+= PYTHON="@comment " +.endif post-patch: - @${REINPLACE_CMD} -e \ - 's|/usr/local/|${LOCALBASE}|g' ${WRKSRC}/configure - @${REINPLACE_CMD} -e \ - 's|= babel|= openbabel|g' ${WRKSRC}/doc/Makefile.in - @${REINPLACE_CMD} -e 's| babel| openbabel|g ; \ - s|"babel|"openbabel|g' ${WRKSRC}/doc/o*.1 - @${REINPLACE_CMD} -e 's|babel$$(EXEEXT)|openbabel$$(EXEEXT)|g' ${WRKSRC}/tools/Makefile.in +.if !${PORT_OPTIONS:MCAIRO} + ${REINPLACE_CMD} -e '/find_package(Cairo)/d' \ + ${WRKSRC}/CMakeLists.txt +.endif + ${REINPLACE_CMD} -e '/pkgconfig/s,$${LIB_INSTALL_DIR},libdata,' \ + ${WRKSRC}/CMakeLists.txt + ${REINPLACE_CMD} -e 's,share/man,man,' \ + ${WRKSRC}/doc/CMakeLists.txt -.include +.include diff --git a/science/openbabel/distinfo b/science/openbabel/distinfo index a506de08caea..084378dc32a9 100644 --- a/science/openbabel/distinfo +++ b/science/openbabel/distinfo @@ -1,2 +1,2 @@ -SHA256 (openbabel-2.2.3.tar.gz) = eabc8bdbd68431f441b6b40adde0861b2e99750efd21bbb4870ee0a233feae46 -SIZE (openbabel-2.2.3.tar.gz) = 6624028 +SHA256 (openbabel-2.3.2.tar.gz) = 4eaca26679aa6cc85ebf96af19191472ac63ca442c36b0427b369c3a25705188 +SIZE (openbabel-2.3.2.tar.gz) = 20509105 diff --git a/science/openbabel/files/patch-scripts__CMakeLists.txt b/science/openbabel/files/patch-scripts__CMakeLists.txt new file mode 100644 index 000000000000..eaf5df494a63 --- /dev/null +++ b/science/openbabel/files/patch-scripts__CMakeLists.txt @@ -0,0 +1,23 @@ +--- ./scripts/CMakeLists.txt.orig 2012-10-03 19:08:52.000000000 +0000 ++++ ./scripts/CMakeLists.txt 2012-10-29 23:15:24.219796263 +0000 +@@ -50,6 +50,7 @@ + + if(PYTHONLIBS_FOUND AND PYTHONINTERP_FOUND) + set(DO_PYTHON_BINDINGS ON BOOL) ++ set(PYTHON_SITE_PACKAGES_INSTALL_DIR ${CMAKE_INSTALL_PREFIX}/lib${LIB_SUFFIX}/python${PYTHON_VERSION_MAJOR}.${PYTHON_VERSION_MINOR}/site-packages CACHE PATH "The directory where python modules will be installed to.") + message(STATUS "Python bindings will be compiled") + endif(PYTHONLIBS_FOUND AND PYTHONINTERP_FOUND) + +@@ -91,9 +92,9 @@ + PREFIX "" + SUFFIX .so ) + add_dependencies(bindings_python openbabel) +- install(TARGETS bindings_python LIBRARY DESTINATION ${LIB_INSTALL_DIR}) +- install(FILES ${openbabel_SOURCE_DIR}/scripts/python/openbabel.py DESTINATION ${LIB_INSTALL_DIR}) +- install(FILES ${openbabel_SOURCE_DIR}/scripts/python/pybel.py DESTINATION ${LIB_INSTALL_DIR}) ++ install(TARGETS bindings_python LIBRARY DESTINATION ${PYTHON_SITE_PACKAGES_INSTALL_DIR}) ++ install(FILES ${openbabel_SOURCE_DIR}/scripts/python/openbabel.py DESTINATION ${PYTHON_SITE_PACKAGES_INSTALL_DIR}) ++ install(FILES ${openbabel_SOURCE_DIR}/scripts/python/pybel.py DESTINATION ${PYTHON_SITE_PACKAGES_INSTALL_DIR}) + else(NOT WIN32) + set_target_properties(bindings_python PROPERTIES + OUTPUT_NAME _openbabel diff --git a/science/openbabel/pkg-plist b/science/openbabel/pkg-plist index 2866be216886..2269910c3c90 100644 --- a/science/openbabel/pkg-plist +++ b/science/openbabel/pkg-plist @@ -1,3 +1,5 @@ +bin/babel +bin/obabel bin/obchiral bin/obconformer bin/obenergy @@ -7,11 +9,12 @@ bin/obgrep bin/obminimize bin/obprobe bin/obprop +bin/obrms bin/obrotamer bin/obrotate -bin/openbabel +bin/obspectrophore bin/roundtrip -include/inchi102/inchi_api.h +include/inchi/inchi_api.h include/openbabel-2.0/openbabel/alias.h include/openbabel-2.0/openbabel/atom.h include/openbabel-2.0/openbabel/atomclass.h @@ -23,8 +26,10 @@ include/openbabel-2.0/openbabel/bondtyper.h include/openbabel-2.0/openbabel/builder.h include/openbabel-2.0/openbabel/canon.h include/openbabel-2.0/openbabel/chains.h +include/openbabel-2.0/openbabel/chargemodel.h include/openbabel-2.0/openbabel/chemdrawcdx.h include/openbabel-2.0/openbabel/chiral.h +include/openbabel-2.0/openbabel/conformersearch.h include/openbabel-2.0/openbabel/data.h include/openbabel-2.0/openbabel/descriptor.h include/openbabel-2.0/openbabel/dlhandler.h @@ -32,18 +37,24 @@ include/openbabel-2.0/openbabel/fingerprint.h include/openbabel-2.0/openbabel/forcefield.h include/openbabel-2.0/openbabel/format.h include/openbabel-2.0/openbabel/generic.h +include/openbabel-2.0/openbabel/graphsym.h include/openbabel-2.0/openbabel/grid.h include/openbabel-2.0/openbabel/griddata.h include/openbabel-2.0/openbabel/groupcontrib.h +include/openbabel-2.0/openbabel/inchiformat.h include/openbabel-2.0/openbabel/internalcoord.h +include/openbabel-2.0/openbabel/isomorphism.h include/openbabel-2.0/openbabel/kinetics.h include/openbabel-2.0/openbabel/lineend.h include/openbabel-2.0/openbabel/locale.h +include/openbabel-2.0/openbabel/math/align.h +include/openbabel-2.0/openbabel/math/erf.h include/openbabel-2.0/openbabel/math/matrix3x3.h include/openbabel-2.0/openbabel/math/spacegroup.h include/openbabel-2.0/openbabel/math/transform3d.h include/openbabel-2.0/openbabel/math/vector3.h include/openbabel-2.0/openbabel/matrix.h +include/openbabel-2.0/openbabel/mcdlutil.h include/openbabel-2.0/openbabel/mol.h include/openbabel-2.0/openbabel/molchrg.h include/openbabel-2.0/openbabel/obconversion.h @@ -58,318 +69,204 @@ include/openbabel-2.0/openbabel/patty.h include/openbabel-2.0/openbabel/phmodel.h include/openbabel-2.0/openbabel/plugin.h include/openbabel-2.0/openbabel/pointgroup.h +include/openbabel-2.0/openbabel/query.h include/openbabel-2.0/openbabel/rand.h include/openbabel-2.0/openbabel/reaction.h include/openbabel-2.0/openbabel/residue.h include/openbabel-2.0/openbabel/ring.h include/openbabel-2.0/openbabel/rotamer.h include/openbabel-2.0/openbabel/rotor.h +include/openbabel-2.0/openbabel/shared_ptr.h +include/openbabel-2.0/openbabel/spectrophore.h +include/openbabel-2.0/openbabel/stereo/bindings.h +include/openbabel-2.0/openbabel/stereo/cistrans.h +include/openbabel-2.0/openbabel/stereo/squareplanar.h +include/openbabel-2.0/openbabel/stereo/stereo.h +include/openbabel-2.0/openbabel/stereo/tetrahedral.h +include/openbabel-2.0/openbabel/stereo/tetranonplanar.h +include/openbabel-2.0/openbabel/stereo/tetraplanar.h +include/openbabel-2.0/openbabel/text.h include/openbabel-2.0/openbabel/tokenst.h include/openbabel-2.0/openbabel/typer.h include/openbabel-2.0/openbabel/xml.h 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-%%DATADIR%%/%%VERSION%%/mmff94.ff -%%DATADIR%%/%%VERSION%%/mmff94s.ff -%%DATADIR%%/%%VERSION%%/mmffang.par -%%DATADIR%%/%%VERSION%%/mmffbndk.par -%%DATADIR%%/%%VERSION%%/mmffbond.par -%%DATADIR%%/%%VERSION%%/mmffchg.par -%%DATADIR%%/%%VERSION%%/mmffdef.par -%%DATADIR%%/%%VERSION%%/mmffdfsb.par -%%DATADIR%%/%%VERSION%%/mmffoop.par -%%DATADIR%%/%%VERSION%%/mmffpbci.par -%%DATADIR%%/%%VERSION%%/mmffprop.par -%%DATADIR%%/%%VERSION%%/mmffs_oop.par -%%DATADIR%%/%%VERSION%%/mmffs_tor.par -%%DATADIR%%/%%VERSION%%/mmffstbn.par -%%DATADIR%%/%%VERSION%%/mmfftor.par -%%DATADIR%%/%%VERSION%%/mmffvdw.par -%%DATADIR%%/%%VERSION%%/mr.txt -%%DATADIR%%/%%VERSION%%/patterns.txt -%%DATADIR%%/%%VERSION%%/phmodel.txt -%%DATADIR%%/%%VERSION%%/plugindefines.txt -%%DATADIR%%/%%VERSION%%/psa.txt -%%DATADIR%%/%%VERSION%%/resdata.txt -%%DATADIR%%/%%VERSION%%/ringtyp.txt -%%DATADIR%%/%%VERSION%%/space-groups.txt -%%DATADIR%%/%%VERSION%%/torlib.txt -%%DATADIR%%/%%VERSION%%/types.txt -@dirrm %%DATADIR%%/%%VERSION%% -@dirrm %%DATADIR%% +share/openbabel/%%VERSION%%/MACCS.txt +share/openbabel/%%VERSION%%/SMARTS_InteLigand.txt +share/openbabel/%%VERSION%%/UFF.prm +share/openbabel/%%VERSION%%/aromatic.txt +share/openbabel/%%VERSION%%/atomtyp.txt +share/openbabel/%%VERSION%%/babel_povray3.inc +share/openbabel/%%VERSION%%/bondtyp.txt +share/openbabel/%%VERSION%%/element.txt +share/openbabel/%%VERSION%%/fragments.txt +share/openbabel/%%VERSION%%/gaff.dat +share/openbabel/%%VERSION%%/gaff.prm +share/openbabel/%%VERSION%%/ghemical.prm +share/openbabel/%%VERSION%%/isotope-small.txt +share/openbabel/%%VERSION%%/isotope.txt +share/openbabel/%%VERSION%%/logp.txt +share/openbabel/%%VERSION%%/mmff94.ff +share/openbabel/%%VERSION%%/mmff94s.ff +share/openbabel/%%VERSION%%/mmffang.par +share/openbabel/%%VERSION%%/mmffbndk.par +share/openbabel/%%VERSION%%/mmffbond.par +share/openbabel/%%VERSION%%/mmffchg.par +share/openbabel/%%VERSION%%/mmffdef.par +share/openbabel/%%VERSION%%/mmffdfsb.par +share/openbabel/%%VERSION%%/mmffoop.par +share/openbabel/%%VERSION%%/mmffpbci.par +share/openbabel/%%VERSION%%/mmffprop.par +share/openbabel/%%VERSION%%/mmffs_oop.par +share/openbabel/%%VERSION%%/mmffs_tor.par +share/openbabel/%%VERSION%%/mmffstbn.par +share/openbabel/%%VERSION%%/mmfftor.par +share/openbabel/%%VERSION%%/mmffvdw.par +share/openbabel/%%VERSION%%/mr.txt +share/openbabel/%%VERSION%%/patterns.txt +share/openbabel/%%VERSION%%/phmodel.txt +share/openbabel/%%VERSION%%/plugindefines.txt +share/openbabel/%%VERSION%%/psa.txt +share/openbabel/%%VERSION%%/qeq.txt +share/openbabel/%%VERSION%%/resdata.txt +share/openbabel/%%VERSION%%/ringtyp.txt +share/openbabel/%%VERSION%%/space-groups.txt +share/openbabel/%%VERSION%%/splash.png +share/openbabel/%%VERSION%%/superatom.txt +share/openbabel/%%VERSION%%/svgformat.script +share/openbabel/%%VERSION%%/torlib.txt +share/openbabel/%%VERSION%%/types.txt +@dirrm share/openbabel/%%VERSION%% +@dirrm share/openbabel +%%PYTHON%%@dirrmtry %%PYTHON_SITELIBDIR%% +%%PYTHON%%@dirrmtry %%PYTHON_LIBDIR%% @dirrm lib/openbabel/%%VERSION%% @dirrm lib/openbabel +@dirrm lib/cmake/openbabel2 +@dirrmtry lib/cmake +@dirrm include/openbabel-2.0/openbabel/stereo @dirrm include/openbabel-2.0/openbabel/math @dirrm include/openbabel-2.0/openbabel @dirrm include/openbabel-2.0 -@dirrm include/inchi102 +@dirrm include/inchi diff --git a/science/py-openbabel/Makefile b/science/py-openbabel/Makefile deleted file mode 100644 index c4243a87f5f4..000000000000 --- a/science/py-openbabel/Makefile +++ /dev/null @@ -1,30 +0,0 @@ -# New ports collection makefile for: py-openbabel -# Date created: 2008-07-18 -# Whom: Max Brazhnikov -# -# $FreeBSD$ -# - -PORTNAME= openbabel -PORTVERSION= 2.2.3 -CATEGORIES= science python -MASTER_SITES= SF -PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} - -MAINTAINER= makc@FreeBSD.org -COMMENT= Python bindings for openbabel - -LIB_DEPENDS= openbabel.3:${PORTSDIR}/science/openbabel - -USE_PYTHON= yes -USE_PYDISTUTILS= yes -BUILD_WRKSRC= ${WRKSRC}/scripts/python -INSTALL_WRKSRC= ${BUILD_WRKSRC} - -PYDISTUTILS_PKGVERSION= 1.5 - -#Fix build with non-default LOCALBASE -CONFIGURE_ENV+= OPENBABEL_INSTALL=${LOCALBASE} -MAKE_ENV+= OPENBABEL_INSTALL=${LOCALBASE} - -.include diff --git a/science/py-openbabel/distinfo b/science/py-openbabel/distinfo deleted file mode 100644 index a506de08caea..000000000000 --- a/science/py-openbabel/distinfo +++ /dev/null @@ -1,2 +0,0 @@ -SHA256 (openbabel-2.2.3.tar.gz) = eabc8bdbd68431f441b6b40adde0861b2e99750efd21bbb4870ee0a233feae46 -SIZE (openbabel-2.2.3.tar.gz) = 6624028 diff --git a/science/py-openbabel/pkg-descr b/science/py-openbabel/pkg-descr deleted file mode 100644 index 62d28d8e61af..000000000000 --- a/science/py-openbabel/pkg-descr +++ /dev/null @@ -1,3 +0,0 @@ -This port installs python bindings for openbabel. - -WWW: http://openbabel.sourceforge.net diff --git a/science/py-openbabel/pkg-plist b/science/py-openbabel/pkg-plist deleted file mode 100644 index 8ae081ce5f37..000000000000 --- a/science/py-openbabel/pkg-plist +++ /dev/null @@ -1,9 +0,0 @@ -%%PYTHON_SITELIBDIR%%/_openbabel.so -%%PYTHON_SITELIBDIR%%/openbabel.py -%%PYTHON_SITELIBDIR%%/openbabel.pyc -%%PYTHON_SITELIBDIR%%/openbabel.pyo -%%PYTHON_SITELIBDIR%%/pybel.py -%%PYTHON_SITELIBDIR%%/pybel.pyc -%%PYTHON_SITELIBDIR%%/pybel.pyo -@dirrmtry %%PYTHON_SITELIBDIR%% -@dirrmtry %%PYTHON_LIBDIR%% diff --git a/science/v_sim/Makefile b/science/v_sim/Makefile index 48b5a020d4bb..d62dbc4253f6 100644 --- a/science/v_sim/Makefile +++ b/science/v_sim/Makefile @@ -3,6 +3,7 @@ PORTNAME= v_sim PORTVERSION= 3.6.1.1 +PORTREVISION= 1 CATEGORIES= science MASTER_SITES= http://www-drfmc.cea.fr/sp2m/L_Sim/V_Sim/download/ @@ -49,7 +50,7 @@ PLIST_SUB+= CDF="@comment " .endif .if !defined(WITHOUT_BABEL) -LIB_DEPENDS+= openbabel.3:${PORTSDIR}/science/openbabel +LIB_DEPENDS+= openbabel:${PORTSDIR}/science/openbabel CONFIGURE_ARGS+=--with-openbabel PLIST_SUB+= BABEL="" .else