diff --git a/biology/fasta/Makefile b/biology/fasta/Makefile index bda68d575347..f6b19905b720 100644 --- a/biology/fasta/Makefile +++ b/biology/fasta/Makefile @@ -6,7 +6,7 @@ # PORTNAME= fasta -PORTVERSION= 21.u1.d0 +PORTVERSION= 21.u1.d1 CATEGORIES= biology MASTER_SITES= http://ftp.virginia.edu/pub/fasta/ DISTNAME= fasta${PORTVERSION:S/.//g} diff --git a/biology/fasta/distinfo b/biology/fasta/distinfo index e9bfec1bed86..ebee0667f707 100644 --- a/biology/fasta/distinfo +++ b/biology/fasta/distinfo @@ -1,3 +1,3 @@ -MD5 (fasta21u1d0.shar.Z) = df423465929b2f8ceaf508dceffa3403 -SHA256 (fasta21u1d0.shar.Z) = b03e11c74bccf42d8319cc98a35df7df02847b8e9f2b45d602220b1e9940a4c0 -SIZE (fasta21u1d0.shar.Z) = 463293 +MD5 (fasta21u1d1.shar.Z) = f7fefbcf6b07e546eed1a1c6df98821e +SHA256 (fasta21u1d1.shar.Z) = 9b45ffb0ba7111f398f03fffd77d8c823ced6756461ec96428dc36d88d6777f3 +SIZE (fasta21u1d1.shar.Z) = 445052 diff --git a/biology/fasta/files/patch-Makefile b/biology/fasta/files/patch-Makefile index 39c4b5160c48..e627085fbe70 100644 --- a/biology/fasta/files/patch-Makefile +++ b/biology/fasta/files/patch-Makefile @@ -1,7 +1,7 @@ ---- Makefile.orig Mon Jan 29 15:10:42 2001 -+++ Makefile Mon Jan 29 15:15:08 2001 -@@ -3,14 +3,14 @@ - # for mips, also use: -mips2 -O2 +--- Makefile.orig Sun May 7 22:29:14 2006 ++++ Makefile Sun May 7 22:30:52 2006 +@@ -2,14 +2,14 @@ + # for SGI also use: -signed # -CC= cc -O @@ -13,13 +13,13 @@ +CFLAGS+= -DUNIX -DBIGMEM -DSFCHAR="':'" -DEXPM1 -DPROGRESS -DGAP_OPEN LFLAGS= -lm -o --BIN = /seqprg/slib/bin +-BIN = /seqprg/bin +BIN = $(PREFIX)/bin #NRAND= nrand #IBM RS/6000 - NRAND= nrand48 + #NRAND= nrand48 @@ -29,7 +29,7 @@ - sall : $(SPROGS) + all : $(PROGS) install : - cp $(PROGS) $(BIN) diff --git a/biology/fasta/pkg-descr b/biology/fasta/pkg-descr index b5230be12f67..94f0c8464034 100644 --- a/biology/fasta/pkg-descr +++ b/biology/fasta/pkg-descr @@ -1,10 +1,11 @@ -Version 2 of the FASTA packages contains many programs for searching DNA and -protein databases, performing sequence comparisons, producing local -alignments, and other related tasks. +Version 2 of the FASTA packages contains many programs for performing +sequence comparisons, producing local alignments, and other related tasks +for analysing DNA and proteins. -Currently, the FASTA2 suite is in maintenance mode. Updated versions of ONLY -the searching programs are available in version 3 of the FASTA packages, -which may be found in the port biology/fasta3. +Currently, the FASTA2 suite is in maintenance mode. This package provides +the analysis tools from FASTA2. The searching programs are available in +version 3 of the FASTA packages, which may be found in the port +biology/fasta3. FASTA is described in: W. R. Pearson and D. J. Lipman (1988), "Improved Tools for Biological Sequence Analysis", PNAS 85:2444- 2448, and W. R. @@ -16,5 +17,3 @@ not be sold or incorporated into a commercial product. Author: William R Pearson WWW: http://fasta.bioch.virginia.edu/ - --- Johann Visagie diff --git a/biology/fasta/pkg-plist b/biology/fasta/pkg-plist index b92aa3b62a89..7c4d1df211c5 100644 --- a/biology/fasta/pkg-plist +++ b/biology/fasta/pkg-plist @@ -16,8 +16,6 @@ bin/align bin/align0 bin/bestscor bin/crandseq -bin/fasta -bin/fastx bin/flalign bin/fromgb bin/garnier @@ -26,15 +24,9 @@ bin/lalign bin/lfasta bin/plalign bin/plfasta -bin/prdf -bin/prss bin/psgrease bin/randseq bin/relate bin/revcomp -bin/ssearch -bin/tfasta -bin/tfastx bin/tgrease -bin/zs_exp %%PORTDOCS%%@dirrm %%DOCSDIR%%