diff --git a/biology/Makefile b/biology/Makefile index 2415e6d7a85c..0c097ae77b3b 100644 --- a/biology/Makefile +++ b/biology/Makefile @@ -5,6 +5,7 @@ SUBDIR += R-cran-BiocManager SUBDIR += abyss SUBDIR += ad2vcf + SUBDIR += andi SUBDIR += artemis SUBDIR += atac-seq SUBDIR += augustus diff --git a/biology/andi/Makefile b/biology/andi/Makefile new file mode 100644 index 000000000000..ceb195bab1ca --- /dev/null +++ b/biology/andi/Makefile @@ -0,0 +1,32 @@ +PORTNAME= andi +DISTVERSIONPREFIX= v +DISTVERSION= 0.14-3 +DISTVERSIONSUFFIX= -g390af15 +CATEGORIES= biology devel + +MAINTAINER= yuri@FreeBSD.org +COMMENT= Efficient estimation of evolutionary distances +WWW= https://github.com/EvolBioInf/andi + +LICENSE= GPLv3 +LICENSE_FILE= ${WRKSRC}/COPYING + +LIB_DEPENDS= libdivsufsort.so:math/libdivsufsort \ + libgsl.so:math/gsl + +USES= autoreconf gmake localbase pkgconfig +USE_LDCONFIG= yes + +USE_GITHUB= yes +GH_ACCOUNT= EvolBioInf + +GNU_CONFIGURE= yes + +OPTIONS_DEFINE= DOCS + +PORTDOCS= * + +PLIST_FILES= bin/andi \ + share/man/man1/andi.1.gz + +.include diff --git a/biology/andi/distinfo b/biology/andi/distinfo new file mode 100644 index 000000000000..461c52657f4f --- /dev/null +++ b/biology/andi/distinfo @@ -0,0 +1,3 @@ +TIMESTAMP = 1725743879 +SHA256 (EvolBioInf-andi-v0.14-3-g390af15_GH0.tar.gz) = 7373445abd107bbc7fed2f3f01e3dbc34955089cf0690e26beb16bd4014b39ce +SIZE (EvolBioInf-andi-v0.14-3-g390af15_GH0.tar.gz) = 539569 diff --git a/biology/andi/pkg-descr b/biology/andi/pkg-descr new file mode 100644 index 000000000000..4d20c8c9b327 --- /dev/null +++ b/biology/andi/pkg-descr @@ -0,0 +1,4 @@ +andi is a program for estimating the evolutionary distance between closely +related genomes. These distances can be used to rapidly infer phylogenies +for big sets of genomes. Because andi does not compute full alignments, +it is so efficient that it scales even up to thousands of bacterial genomes.