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Code Issues Releases Activity

science/py-pymol: Update to 2.1.0

Browse Source 
Release notes:
https://pymol.org/dokuwiki/?id=media:new21

Port changes:
* Fixed shebang in bin/pymol
* Misc minor changes

Reported by:	portscout
This commit is contained in:
Yuri Victorovich 2018-03-20 07:53:14 +00:00
parent 686234fbe8
commit ed32f634e1
Notes: svn2git 2021-03-31 03:12:20 +00:00 
svn path=/head/; revision=465071
3 changed files with 105 additions and 35 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

11
science/py-pymol/Makefile
View File

@ -3,9 +3,9 @@
PORTNAME= pymol
DISTVERSIONPREFIX= v
DISTVERSION= 1.8.6.0
DISTVERSION= 2.1.0
CATEGORIES= science biology python
MASTER_SITES= SF/pymol/pymol/1.8/
MASTER_SITES= SF/pymol/pymol/2/
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
MAINTAINER= yuri@FreeBSD.org
@ -22,15 +22,16 @@ LIB_DEPENDS= libfreetype.so:print/freetype2 \
libpng.so:graphics/png \
libmsgpackc.so:devel/msgpack
WRKSRC= ${WRKDIR}/pymol
USES= compiler:c++11-lang python:2.7 shebangfix tar:bz2
USE_GL= gl glew glu glut
USE_GNOME= libxml2
USE_PYTHON= distutils concurrent # autoplist is broken: https://sourceforge.net/p/pymol/bugs/189
USE_PYTHON= distutils concurrent # autoplist is broken: https://sourceforge.net/p/pymol/bugs/189
SHEBANG_FILES= test/show test/run test/cyg
WRKSRC= ${WRKDIR}/pymol
post-install:
@${REINPLACE_CMD} -i '' -e 's|#!/bin/bash|#!/bin/sh|' ${STAGEDIR}${PREFIX}/bin/pymol
@${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/pymol/_cmd.so
@${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/chempy/champ/_champ.so

6
science/py-pymol/distinfo
View File

@ -1,3 +1,3 @@
TIMESTAMP = 1509591135
SHA256 (pymol-v1.8.6.0.tar.bz2) = 7eaaf90ac1e1be0969291cdb1154b3631b5b6403cce1d697133d90cd37a3c565
SIZE (pymol-v1.8.6.0.tar.bz2) = 8717164
TIMESTAMP = 1521529763
SHA256 (pymol-v2.1.0.tar.bz2) = 7ae8ebb899533d691a67c1ec731b00518dea456ab3e258aa052a65c24b63eae2
SIZE (pymol-v2.1.0.tar.bz2) = 8779083

123
science/py-pymol/pkg-plist
View File

@ -168,6 +168,72 @@ bin/pymol
%%PYTHON_SITELIBDIR%%/chempy/xyz.py
%%PYTHON_SITELIBDIR%%/chempy/xyz.pyc
%%PYTHON_SITELIBDIR%%/chempy/xyz.pyo
%%PYTHON_SITELIBDIR%%/pmg_qt/TextEditor.py
%%PYTHON_SITELIBDIR%%/pmg_qt/TextEditor.pyc
%%PYTHON_SITELIBDIR%%/pmg_qt/TextEditor.pyo
%%PYTHON_SITELIBDIR%%/pmg_qt/__init__.py
%%PYTHON_SITELIBDIR%%/pmg_qt/__init__.pyc
%%PYTHON_SITELIBDIR%%/pmg_qt/__init__.pyo
%%PYTHON_SITELIBDIR%%/pmg_qt/advanced_settings_gui.py
%%PYTHON_SITELIBDIR%%/pmg_qt/advanced_settings_gui.pyc
%%PYTHON_SITELIBDIR%%/pmg_qt/advanced_settings_gui.pyo
%%PYTHON_SITELIBDIR%%/pmg_qt/builder.py
%%PYTHON_SITELIBDIR%%/pmg_qt/builder.pyc
%%PYTHON_SITELIBDIR%%/pmg_qt/builder.pyo
%%PYTHON_SITELIBDIR%%/pmg_qt/file_dialogs.py
%%PYTHON_SITELIBDIR%%/pmg_qt/file_dialogs.pyc
%%PYTHON_SITELIBDIR%%/pmg_qt/file_dialogs.pyo
%%PYTHON_SITELIBDIR%%/pmg_qt/forms/__init__.py
%%PYTHON_SITELIBDIR%%/pmg_qt/forms/__init__.pyc
%%PYTHON_SITELIBDIR%%/pmg_qt/forms/__init__.pyo
%%PYTHON_SITELIBDIR%%/pmg_qt/forms/askpartial.ui
%%PYTHON_SITELIBDIR%%/pmg_qt/forms/colors.ui
%%PYTHON_SITELIBDIR%%/pmg_qt/forms/fetch.ui
%%PYTHON_SITELIBDIR%%/pmg_qt/forms/load_mae.ui
%%PYTHON_SITELIBDIR%%/pmg_qt/forms/load_map.ui
%%PYTHON_SITELIBDIR%%/pmg_qt/forms/load_mtz.ui
%%PYTHON_SITELIBDIR%%/pmg_qt/forms/load_traj.ui
%%PYTHON_SITELIBDIR%%/pmg_qt/forms/movieexport.ui
%%PYTHON_SITELIBDIR%%/pmg_qt/forms/pluginitem.ui
%%PYTHON_SITELIBDIR%%/pmg_qt/forms/pluginmanager.ui
%%PYTHON_SITELIBDIR%%/pmg_qt/forms/png.ui
%%PYTHON_SITELIBDIR%%/pmg_qt/forms/props.ui
%%PYTHON_SITELIBDIR%%/pmg_qt/forms/render.ui
%%PYTHON_SITELIBDIR%%/pmg_qt/forms/save_molecule.ui
%%PYTHON_SITELIBDIR%%/pmg_qt/forms/save_object.ui
%%PYTHON_SITELIBDIR%%/pmg_qt/keymapping.py
%%PYTHON_SITELIBDIR%%/pmg_qt/keymapping.pyc
%%PYTHON_SITELIBDIR%%/pmg_qt/keymapping.pyo
%%PYTHON_SITELIBDIR%%/pmg_qt/mimic_pmg_tk.py
%%PYTHON_SITELIBDIR%%/pmg_qt/mimic_pmg_tk.pyc
%%PYTHON_SITELIBDIR%%/pmg_qt/mimic_pmg_tk.pyo
%%PYTHON_SITELIBDIR%%/pmg_qt/mimic_tk.py
%%PYTHON_SITELIBDIR%%/pmg_qt/mimic_tk.pyc
%%PYTHON_SITELIBDIR%%/pmg_qt/mimic_tk.pyo
%%PYTHON_SITELIBDIR%%/pmg_qt/properties_dialog.py
%%PYTHON_SITELIBDIR%%/pmg_qt/properties_dialog.pyc
%%PYTHON_SITELIBDIR%%/pmg_qt/properties_dialog.pyo
%%PYTHON_SITELIBDIR%%/pmg_qt/pymol_gl_widget.py
%%PYTHON_SITELIBDIR%%/pmg_qt/pymol_gl_widget.pyc
%%PYTHON_SITELIBDIR%%/pmg_qt/pymol_gl_widget.pyo
%%PYTHON_SITELIBDIR%%/pmg_qt/pymol_qt_gui.py
%%PYTHON_SITELIBDIR%%/pmg_qt/pymol_qt_gui.pyc
%%PYTHON_SITELIBDIR%%/pmg_qt/pymol_qt_gui.pyo
%%PYTHON_SITELIBDIR%%/pmg_qt/syntax/__init__.py
%%PYTHON_SITELIBDIR%%/pmg_qt/syntax/__init__.pyc
%%PYTHON_SITELIBDIR%%/pmg_qt/syntax/__init__.pyo
%%PYTHON_SITELIBDIR%%/pmg_qt/syntax/pml.py
%%PYTHON_SITELIBDIR%%/pmg_qt/syntax/pml.pyc
%%PYTHON_SITELIBDIR%%/pmg_qt/syntax/pml.pyo
%%PYTHON_SITELIBDIR%%/pmg_qt/syntax/pmlparser.py
%%PYTHON_SITELIBDIR%%/pmg_qt/syntax/pmlparser.pyc
%%PYTHON_SITELIBDIR%%/pmg_qt/syntax/pmlparser.pyo
%%PYTHON_SITELIBDIR%%/pmg_qt/syntax/python.py
%%PYTHON_SITELIBDIR%%/pmg_qt/syntax/python.pyc
%%PYTHON_SITELIBDIR%%/pmg_qt/syntax/python.pyo
%%PYTHON_SITELIBDIR%%/pmg_qt/volume.py
%%PYTHON_SITELIBDIR%%/pmg_qt/volume.pyc
%%PYTHON_SITELIBDIR%%/pmg_qt/volume.pyo
%%PYTHON_SITELIBDIR%%/pmg_tk/ColorEditor.py
%%PYTHON_SITELIBDIR%%/pmg_tk/ColorEditor.pyc
%%PYTHON_SITELIBDIR%%/pmg_tk/ColorEditor.pyo
@ -219,9 +285,12 @@ bin/pymol
%%PYTHON_SITELIBDIR%%/pmg_tk/volume.py
%%PYTHON_SITELIBDIR%%/pmg_tk/volume.pyc
%%PYTHON_SITELIBDIR%%/pmg_tk/volume.pyo
%%PYTHON_SITELIBDIR%%/pmg_wx/__init__.py
%%PYTHON_SITELIBDIR%%/pmg_wx/__init__.pyc
%%PYTHON_SITELIBDIR%%/pmg_wx/__init__.pyo
%%PYTHON_SITELIBDIR%%/pymol/Qt/__init__.py
%%PYTHON_SITELIBDIR%%/pymol/Qt/__init__.pyc
%%PYTHON_SITELIBDIR%%/pymol/Qt/__init__.pyo
%%PYTHON_SITELIBDIR%%/pymol/Qt/utils.py
%%PYTHON_SITELIBDIR%%/pymol/Qt/utils.pyc
%%PYTHON_SITELIBDIR%%/pymol/Qt/utils.pyo
%%PYTHON_SITELIBDIR%%/pymol/__init__.py
%%PYTHON_SITELIBDIR%%/pymol/__init__.pyc
%%PYTHON_SITELIBDIR%%/pymol/__init__.pyo
@ -229,6 +298,9 @@ bin/pymol
%%PYTHON_SITELIBDIR%%/pymol/__main__.pyc
%%PYTHON_SITELIBDIR%%/pymol/__main__.pyo
%%PYTHON_SITELIBDIR%%/pymol/_cmd.so
%%PYTHON_SITELIBDIR%%/pymol/_gui.py
%%PYTHON_SITELIBDIR%%/pymol/_gui.pyc
%%PYTHON_SITELIBDIR%%/pymol/_gui.pyo
%%PYTHON_SITELIBDIR%%/pymol/api.py
%%PYTHON_SITELIBDIR%%/pymol/api.pyc
%%PYTHON_SITELIBDIR%%/pymol/api.pyo
@ -244,6 +316,9 @@ bin/pymol
%%PYTHON_SITELIBDIR%%/pymol/cmd.py
%%PYTHON_SITELIBDIR%%/pymol/cmd.pyc
%%PYTHON_SITELIBDIR%%/pymol/cmd.pyo
%%PYTHON_SITELIBDIR%%/pymol/colorprinting.py
%%PYTHON_SITELIBDIR%%/pymol/colorprinting.pyc
%%PYTHON_SITELIBDIR%%/pymol/colorprinting.pyo
%%PYTHON_SITELIBDIR%%/pymol/colorramping.py
%%PYTHON_SITELIBDIR%%/pymol/colorramping.pyc
%%PYTHON_SITELIBDIR%%/pymol/colorramping.pyo
@ -271,6 +346,9 @@ bin/pymol
%%PYTHON_SITELIBDIR%%/pymol/creating.py
%%PYTHON_SITELIBDIR%%/pymol/creating.pyc
%%PYTHON_SITELIBDIR%%/pymol/creating.pyo
%%PYTHON_SITELIBDIR%%/pymol/diagnosing.py
%%PYTHON_SITELIBDIR%%/pymol/diagnosing.pyc
%%PYTHON_SITELIBDIR%%/pymol/diagnosing.pyo
%%PYTHON_SITELIBDIR%%/pymol/editing.py
%%PYTHON_SITELIBDIR%%/pymol/editing.pyc
%%PYTHON_SITELIBDIR%%/pymol/editing.pyo
@ -325,6 +403,9 @@ bin/pymol
%%PYTHON_SITELIBDIR%%/pymol/keywords.py
%%PYTHON_SITELIBDIR%%/pymol/keywords.pyc
%%PYTHON_SITELIBDIR%%/pymol/keywords.pyo
%%PYTHON_SITELIBDIR%%/pymol/lazyio.py
%%PYTHON_SITELIBDIR%%/pymol/lazyio.pyc
%%PYTHON_SITELIBDIR%%/pymol/lazyio.pyo
%%PYTHON_SITELIBDIR%%/pymol/locking.py
%%PYTHON_SITELIBDIR%%/pymol/locking.pyc
%%PYTHON_SITELIBDIR%%/pymol/locking.pyo
@ -376,6 +457,9 @@ bin/pymol
%%PYTHON_SITELIBDIR%%/pymol/plugins/managergui.py
%%PYTHON_SITELIBDIR%%/pymol/plugins/managergui.pyc
%%PYTHON_SITELIBDIR%%/pymol/plugins/managergui.pyo
%%PYTHON_SITELIBDIR%%/pymol/plugins/managergui_qt.py
%%PYTHON_SITELIBDIR%%/pymol/plugins/managergui_qt.pyc
%%PYTHON_SITELIBDIR%%/pymol/plugins/managergui_qt.pyo
%%PYTHON_SITELIBDIR%%/pymol/plugins/repository.py
%%PYTHON_SITELIBDIR%%/pymol/plugins/repository.pyc
%%PYTHON_SITELIBDIR%%/pymol/plugins/repository.pyo
@ -523,6 +607,8 @@ bin/pymol
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/demo/il2.pdb
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/demo/pept.pdb
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/demo/pept.pkl
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/pmg_qt/icons/refresh.svg
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/pmg_qt/styles/pymol.sty
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/pmg_tk/bitmaps/builder/aro5.gif
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/pmg_tk/bitmaps/builder/aro5.xbm
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/pmg_tk/bitmaps/builder/aro6.gif
@ -545,6 +631,7 @@ bin/pymol
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/pmg_tk/bitmaps/builder/cyc7.xbm
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/pymol/cmyk.png
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/pymol/hsv.ppm
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/pymol/icons/icon2.svg
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/pymol/matrices/BLOSUM62
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/pymol/splash.png
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/shaders/anaglyph.fs
@ -582,6 +669,9 @@ bin/pymol
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/shaders/spheredirect.vs
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/shaders/volume.fs
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/shaders/volume.vs
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/startup/README.txt
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/startup/lightingsettings_gui/__init__.py
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/startup/lightingsettings_gui/main.py
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/tut/1hpv.pdb
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/examples/chempy/generate_amber.py
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/examples/chempy/generate_mmff.py
@ -651,18 +741,6 @@ bin/pymol
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/examples/launching/launch_no_tk.py
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/examples/launching/launch_viewer1.py
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/examples/launching/launch_viewer2.py
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/examples/package/redhat/pymol-0.93-1.rh62.py152.spec
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/examples/package/redhat/pymol-0.93-1.rh70.py152.spec
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/examples/package/redhat/pymol-0.93-1.rh72.py21.spec
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/examples/package/redhat/pymol-0.93-1.rh73.py22.spec
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/examples/package/redhat/pymol-0.93-1.rh80.py22.spec
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/examples/package/redhat/pymol-0.93-1.rh90.py22.spec
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/examples/package/redhat/pymol-0.96-1.rh62.py152.spec
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/examples/package/redhat/pymol-0.96-1.rh70.py152.spec
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/examples/package/redhat/pymol-0.96-1.rh72.py21.spec
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/examples/package/redhat/pymol-0.96-1.rh73.py22.spec
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/examples/package/redhat/pymol-0.96-1.rh80.py22.spec
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/examples/package/redhat/pymol-0.96-1.rh90.py22.spec
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/scripts/metaphorics/alignment.pml
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/scripts/metaphorics/annotate.pml
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/scripts/metaphorics/fedora.pml
@ -871,6 +949,9 @@ bin/pymol
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/test/trim.py
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/test/vdiff
%%PYTHON_SITELIBDIR%%/pymol/pymol_path/test/win.py
%%PYTHON_SITELIBDIR%%/pymol/pymolhttpd.py
%%PYTHON_SITELIBDIR%%/pymol/pymolhttpd.pyc
%%PYTHON_SITELIBDIR%%/pymol/pymolhttpd.pyo
%%PYTHON_SITELIBDIR%%/pymol/querying.py
%%PYTHON_SITELIBDIR%%/pymol/querying.pyc
%%PYTHON_SITELIBDIR%%/pymol/querying.pyo
@ -988,15 +1069,3 @@ bin/pymol
%%PYTHON_SITELIBDIR%%/pymol2/cmd2.py
%%PYTHON_SITELIBDIR%%/pymol2/cmd2.pyc
%%PYTHON_SITELIBDIR%%/pymol2/cmd2.pyo
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%%PYTHON_SITELIBDIR%%/web/__init__.pyo
%%PYTHON_SITELIBDIR%%/web/examples/__init__.py
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%%PYTHON_SITELIBDIR%%/web/examples/__init__.pyo
%%PYTHON_SITELIBDIR%%/web/examples/justhttpd.py
%%PYTHON_SITELIBDIR%%/web/examples/justhttpd.pyc
%%PYTHON_SITELIBDIR%%/web/examples/justhttpd.pyo
%%PYTHON_SITELIBDIR%%/web/pymolhttpd.py
%%PYTHON_SITELIBDIR%%/web/pymolhttpd.pyc
%%PYTHON_SITELIBDIR%%/web/pymolhttpd.pyo