diff --git a/math/R-letter/Makefile b/math/R-letter/Makefile index 139ca8ab6a54..d04f5ca17422 100644 --- a/math/R-letter/Makefile +++ b/math/R-letter/Makefile @@ -1,3 +1,4 @@ +# ex: ts=8 sts=0 noet # New ports collection makefile for: R (letter) # Date created: Fri Feb 9 10:50:25 EST 2001 # Whom: Maurice Castro @@ -6,56 +7,77 @@ # PORTNAME= R -PORTVERSION= 1.7.1 +PORTVERSION= 1.8.0 CATEGORIES= math MASTER_SITES= http://cran.r-project.org/src/base/ \ ftp://cran.r-project.org/pub/R/src/base/ \ http://cran.at.r-project.org/src/base/ \ http://cran.au.r-project.org/src/base/ \ + http://cran.br.r-project.org/src/base/ \ http://cran.ch.r-project.org/src/base/ \ + http://cran.es.r-project.org/src/base/ \ http://cran.dk.r-project.org/src/base/ \ http://cran.hu.r-project.org/src/base/ \ http://cran.uk.r-project.org/src/base/ \ http://cran.us.r-project.org/src/base/ \ + http://cran.za.r-project.org/src/base/ \ ftp://ftp.u-aizu.ac.jp/pub/lang/R/CRAN/src/base/ \ - http://lib.stat.cmu.edu/R/CRAN/src/base/ + http://lib.stat.cmu.edu/R/CRAN/src/base/ \ + http://cran.stat.ucla.edu/src/base/ \ + http://probability.ca/cran/src/base/ \ + http://www.ibiblio.org/pub/languages/R/CRAN/src/base/ \ + http://www.bioconductor.org/CRAN/src/base/ PKGNAMESUFFIX= -${PAPERSIZE} EXTRACT_SUFX= .tgz MAINTAINER= vangyzen@stat.duke.edu COMMENT= A language for statistical computing and graphics +CONFLICTS?= R-a4-* + LIB_DEPENDS= tcl84:${PORTSDIR}/lang/tcl84 \ tk84:${PORTSDIR}/x11-toolkits/tk84 \ jpeg.9:${PORTSDIR}/graphics/jpeg \ png.5:${PORTSDIR}/graphics/png \ - pcre.0:${PORTSDIR}/devel/pcre \ - lapack.3:${PORTSDIR}/math/lapack + pcre.0:${PORTSDIR}/devel/pcre + +.if defined(WITH_ATLAS) +LIB_DEPENDS+= f77blas.1:${PORTSDIR}/math/atlas +CONFIGURE_ARGS= --with-lapack="-lalapack -lcblas" --with-blas="-lf77blas" +.else +LIB_DEPENDS+= lapack.3:${PORTSDIR}/math/lapack +CONFIGURE_ARGS= --with-lapack="-llapack" --with-blas="-lblas" +.endif GNU_CONFIGURE= yes USE_XLIB= yes USE_PERL5= yes -CONFIGURE_ENV= R_PAPERSIZE=${PAPERSIZE} \ +CONFIGURE_ENV= R_PAPERSIZE=${PAPERSIZE} FFLAGS="${FFLAGS}" \ INSTALL_DATA="${INSTALL} ${COPY} ${_SHROWNGRP} -m 644" -CONFIGURE_ARGS= --with-lapack +CONFIGURE_ARGS+=--enable-R-shlib PAPERSIZE?= letter .if ${PAPERSIZE} != letter && ${PAPERSIZE} != a4 .BEGIN: @${ECHO} "Invalid value for PAPERSIZE: \"${PAPERSIZE}\"" - @${ECHO} "Possible values are: a4 and letter." + @${ECHO} "Possible values are: a4 letter" @${FALSE} .endif MAN1= R.1 +test check: build + @(cd ${WRKSRC}; ${MAKE} check) +check-all: build + @(cd ${WRKSRC}; ${MAKE} check-all) + .include -#.if ${OSVERSION} >= 500113 -#BROKEN= "Does not compile" -#.endif - -test check: build - @(cd ${WRKSRC}; make check) +# Work around a gcc-3.3.1 internal compiler error on 5.1-CURRENT. +.if ${OSVERSION} >= 501103 +pre-build: + @(cd ${WRKSRC}/src/include; ${MAKE} Rmath.h) + @(cd ${WRKSRC}/src/main; ${MAKE} CFLAGS+=-O0 plotmath.o) +.endif .include diff --git a/math/R-letter/distinfo b/math/R-letter/distinfo index a438e43ae205..82b13acda835 100644 --- a/math/R-letter/distinfo +++ b/math/R-letter/distinfo @@ -1 +1 @@ -MD5 (R-1.7.1.tgz) = 833c2a9a62818211f2f9f0353ecd9bbd +MD5 (R-1.8.0.tgz) = bb019d7e12e38ac8a8bc247f06cc6b42 diff --git a/math/R-letter/pkg-descr b/math/R-letter/pkg-descr index bac2f88956c4..a5394140f21e 100644 --- a/math/R-letter/pkg-descr +++ b/math/R-letter/pkg-descr @@ -1,20 +1,22 @@ -R is a language and environment for statistical computing and graphics. -It is a GNU project which is similar to the S language and environment -which was developed at Bell Laboratories (formerly AT&T, now Lucent -Technologies) by John Chambers and colleagues. R can be considered as a -different implementation of S. There are some important differences, -but much code written for S runs unaltered under R. +From : -R provides a wide variety of statistical (linear and nonlinear modelling, -classical statistical tests, time-series analysis, classification, -clustering, ...) and graphical techniques, and is highly extensible. -The S language is often the vehicle of choice for research in statistical -methodology, and R provides an Open Source route to participation in that -activity. + R is a language and environment for statistical computing and graphics. + It is a GNU project which is similar to the S language and environment + which was developed at Bell Laboratories (formerly AT&T, now Lucent + Technologies) by John Chambers and colleagues. R can be considered as a + different implementation of S. There are some important differences, + but much code written for S runs unaltered under R. -One of R's strengths is the ease with which well-designed publication-quality -plots can be produced, including mathematical symbols and formulae where -needed. Great care has been taken over the defaults for the minor design -choices in graphics, but the user retains full control. + R provides a wide variety of statistical (linear and nonlinear modelling, + classical statistical tests, time-series analysis, classification, + clustering, ...) and graphical techniques, and is highly extensible. + The S language is often the vehicle of choice for research in statistical + methodology, and R provides an Open Source route to participation in that + activity. + + One of R's strengths is the ease with which well-designed + publication-quality plots can be produced, including mathematical symbols + and formulae where needed. Great care has been taken over the defaults for + the minor design choices in graphics, but the user retains full control. WWW: http://www.R-project.org/ diff --git a/math/R-letter/pkg-plist b/math/R-letter/pkg-plist index fff84538a265..2e21f0209219 100644 --- a/math/R-letter/pkg-plist +++ b/math/R-letter/pkg-plist @@ -98,7 +98,6 @@ lib/R/bin/Rd2dvi lib/R/bin/Rd2txt lib/R/bin/Rdconv lib/R/bin/Rdiff -lib/R/bin/Rdindex lib/R/bin/Rprof lib/R/bin/SHLIB lib/R/bin/Sd2Rd @@ -106,7 +105,9 @@ lib/R/bin/build lib/R/bin/check lib/R/bin/config lib/R/bin/f77 +lib/R/bin/libR.so lib/R/bin/libtool +lib/R/bin/mkinstalldirs lib/R/bin/pager lib/R/bin/texi2dvi lib/R/doc/KEYWORDS @@ -160,8 +161,8 @@ lib/R/include/R_ext/GraphicsDevice.h lib/R/include/R_ext/GraphicsEngine.h lib/R/include/R_ext/Lapack.h lib/R/include/R_ext/Linpack.h -lib/R/include/R_ext/Mathlib.h lib/R/include/R_ext/Memory.h +lib/R/include/R_ext/Parse.h lib/R/include/R_ext/Print.h lib/R/include/R_ext/PrtUtil.h lib/R/include/R_ext/R-ftp-http.h @@ -184,6 +185,7 @@ lib/R/library/KernSmooth/CONTENTS lib/R/library/KernSmooth/DESCRIPTION lib/R/library/KernSmooth/INDEX lib/R/library/KernSmooth/Meta/Rd.rds +lib/R/library/KernSmooth/Meta/hsearch.rds lib/R/library/KernSmooth/NAMESPACE lib/R/library/KernSmooth/R-ex/bkde.R lib/R/library/KernSmooth/R-ex/bkde2D.R @@ -224,6 +226,7 @@ lib/R/library/MASS/INDEX lib/R/library/MASS/LICENCE lib/R/library/MASS/Meta/Rd.rds lib/R/library/MASS/Meta/data.rds +lib/R/library/MASS/Meta/hsearch.rds lib/R/library/MASS/NAMESPACE lib/R/library/MASS/R-ex/Insurance.R lib/R/library/MASS/R-ex/Null.R @@ -460,7 +463,6 @@ lib/R/library/MASS/help/eagles lib/R/library/MASS/help/epil lib/R/library/MASS/help/eqscplot lib/R/library/MASS/help/farms -lib/R/library/MASS/help/fdeaths lib/R/library/MASS/help/fgl lib/R/library/MASS/help/fitdistr lib/R/library/MASS/help/forbes @@ -496,7 +498,6 @@ lib/R/library/MASS/help/logtrans lib/R/library/MASS/help/mammals lib/R/library/MASS/help/mca lib/R/library/MASS/help/mcycle -lib/R/library/MASS/help/mdeaths lib/R/library/MASS/help/menarche lib/R/library/MASS/help/michelson lib/R/library/MASS/help/minn38 @@ -619,7 +620,6 @@ lib/R/library/MASS/html/eagles.html lib/R/library/MASS/html/epil.html lib/R/library/MASS/html/eqscplot.html lib/R/library/MASS/html/farms.html -lib/R/library/MASS/html/fdeaths.html lib/R/library/MASS/html/fgl.html lib/R/library/MASS/html/fitdistr.html lib/R/library/MASS/html/forbes.html @@ -655,7 +655,6 @@ lib/R/library/MASS/html/logtrans.html lib/R/library/MASS/html/mammals.html lib/R/library/MASS/html/mca.html lib/R/library/MASS/html/mcycle.html -lib/R/library/MASS/html/mdeaths.html lib/R/library/MASS/html/menarche.html lib/R/library/MASS/html/michelson.html lib/R/library/MASS/html/minn38.html @@ -777,7 +776,6 @@ lib/R/library/MASS/latex/eagles.tex lib/R/library/MASS/latex/epil.tex lib/R/library/MASS/latex/eqscplot.tex lib/R/library/MASS/latex/farms.tex -lib/R/library/MASS/latex/fdeaths.tex lib/R/library/MASS/latex/fgl.tex lib/R/library/MASS/latex/fitdistr.tex lib/R/library/MASS/latex/forbes.tex @@ -813,7 +811,6 @@ lib/R/library/MASS/latex/logtrans.tex lib/R/library/MASS/latex/mammals.tex lib/R/library/MASS/latex/mca.tex lib/R/library/MASS/latex/mcycle.tex -lib/R/library/MASS/latex/mdeaths.tex lib/R/library/MASS/latex/menarche.tex lib/R/library/MASS/latex/michelson.tex lib/R/library/MASS/latex/minn38.tex @@ -915,6 +912,7 @@ lib/R/library/base/INDEX lib/R/library/base/Meta/Rd.rds lib/R/library/base/Meta/data.rds lib/R/library/base/Meta/demo.rds +lib/R/library/base/Meta/hsearch.rds lib/R/library/base/R-ex/AIC.R lib/R/library/base/R-ex/Arithmetic.R lib/R/library/base/R-ex/Bessel.R @@ -929,6 +927,8 @@ lib/R/library/base/R-ex/DateTimeClasses.R lib/R/library/base/R-ex/Devices.R lib/R/library/base/R-ex/Exponential.R lib/R/library/base/R-ex/Extract.R +lib/R/library/base/R-ex/Extract.data.frame.R +lib/R/library/base/R-ex/Extract.factor.R lib/R/library/base/R-ex/Extremes.R lib/R/library/base/R-ex/FDist.R lib/R/library/base/R-ex/Formaldehyde.R @@ -1032,8 +1032,8 @@ lib/R/library/base/R-ex/birthday.R lib/R/library/base/R-ex/body.R lib/R/library/base/R-ex/box.R lib/R/library/base/R-ex/boxplot.R -lib/R/library/base/R-ex/boxplot.formula.R lib/R/library/base/R-ex/boxplot.stats.R +lib/R/library/base/R-ex/bquote.R lib/R/library/base/R-ex/browseEnv.R lib/R/library/base/R-ex/bxp.R lib/R/library/base/R-ex/by.R @@ -1067,6 +1067,7 @@ lib/R/library/base/R-ex/commandArgs.R lib/R/library/base/R-ex/comment.R lib/R/library/base/R-ex/complete.cases.R lib/R/library/base/R-ex/complex.R +lib/R/library/base/R-ex/conditions.R lib/R/library/base/R-ex/confint.R lib/R/library/base/R-ex/conflicts.R lib/R/library/base/R-ex/connections.R @@ -1169,7 +1170,6 @@ lib/R/library/base/R-ex/getwd.R lib/R/library/base/R-ex/gl.R lib/R/library/base/R-ex/glm.R lib/R/library/base/R-ex/glm.control.R -lib/R/library/base/R-ex/glm.summary.R lib/R/library/base/R-ex/gnome.R lib/R/library/base/R-ex/gray.R lib/R/library/base/R-ex/grep.R @@ -1208,7 +1208,7 @@ lib/R/library/base/R-ex/lapply.R lib/R/library/base/R-ex/layout.R lib/R/library/base/R-ex/legend.R lib/R/library/base/R-ex/length.R -lib/R/library/base/R-ex/levels.factor.R +lib/R/library/base/R-ex/levels.R lib/R/library/base/R-ex/library.R lib/R/library/base/R-ex/library.dynam.R lib/R/library/base/R-ex/lines.R @@ -1217,7 +1217,6 @@ lib/R/library/base/R-ex/list.files.R lib/R/library/base/R-ex/lm.R lib/R/library/base/R-ex/lm.influence.R lib/R/library/base/R-ex/lm.summaries.R -lib/R/library/base/R-ex/lm.summary.R lib/R/library/base/R-ex/lmfit.R lib/R/library/base/R-ex/load.R lib/R/library/base/R-ex/localeconv.R @@ -1236,7 +1235,9 @@ lib/R/library/base/R-ex/mahalanobis.R lib/R/library/base/R-ex/make.link.R lib/R/library/base/R-ex/make.names.R lib/R/library/base/R-ex/make.socket.R +lib/R/library/base/R-ex/make.unique.R lib/R/library/base/R-ex/makepredictcall.R +lib/R/library/base/R-ex/manglePackageName.R lib/R/library/base/R-ex/mapply.R lib/R/library/base/R-ex/margin.table.R lib/R/library/base/R-ex/mat.or.vec.R @@ -1295,7 +1296,6 @@ lib/R/library/base/R-ex/package.contents.R lib/R/library/base/R-ex/package.skeleton.R lib/R/library/base/R-ex/packageStatus.R lib/R/library/base/R-ex/pairs.R -lib/R/library/base/R-ex/pairs.formula.R lib/R/library/base/R-ex/palette.R lib/R/library/base/R-ex/palettes.R lib/R/library/base/R-ex/panel.smooth.R @@ -1309,6 +1309,7 @@ lib/R/library/base/R-ex/phones.R lib/R/library/base/R-ex/pictex.R lib/R/library/base/R-ex/pie.R lib/R/library/base/R-ex/plot.R +lib/R/library/base/R-ex/plot.dataframe.R lib/R/library/base/R-ex/plot.design.R lib/R/library/base/R-ex/plot.lm.R lib/R/library/base/R-ex/plot.table.R @@ -1381,6 +1382,7 @@ lib/R/library/base/R-ex/round.POSIXt.R lib/R/library/base/R-ex/row.R lib/R/library/base/R-ex/rowsum.R lib/R/library/base/R-ex/rug.R +lib/R/library/base/R-ex/sQuote.R lib/R/library/base/R-ex/sample.R lib/R/library/base/R-ex/save.R lib/R/library/base/R-ex/savehistory.R @@ -1394,12 +1396,14 @@ lib/R/library/base/R-ex/segments.R lib/R/library/base/R-ex/seq.POSIXt.R lib/R/library/base/R-ex/seq.R lib/R/library/base/R-ex/sequence.R +lib/R/library/base/R-ex/serialize.R lib/R/library/base/R-ex/sets.R lib/R/library/base/R-ex/showConnections.R lib/R/library/base/R-ex/sign.R lib/R/library/base/R-ex/sink.R lib/R/library/base/R-ex/sleep.R lib/R/library/base/R-ex/slice.index.R +lib/R/library/base/R-ex/socketSelect.R lib/R/library/base/R-ex/solve.R lib/R/library/base/R-ex/sort.R lib/R/library/base/R-ex/splinefun.R @@ -1425,6 +1429,8 @@ lib/R/library/base/R-ex/substitute.R lib/R/library/base/R-ex/substr.R lib/R/library/base/R-ex/summary.R lib/R/library/base/R-ex/summary.aov.R +lib/R/library/base/R-ex/summary.glm.R +lib/R/library/base/R-ex/summary.lm.R lib/R/library/base/R-ex/summary.manova.R lib/R/library/base/R-ex/summaryRprof.R lib/R/library/base/R-ex/sunflowerplot.R @@ -1471,6 +1477,7 @@ lib/R/library/base/R-ex/update.packages.R lib/R/library/base/R-ex/url.show.R lib/R/library/base/R-ex/uspop.R lib/R/library/base/R-ex/vector.R +lib/R/library/base/R-ex/vignette.R lib/R/library/base/R-ex/volcano.R lib/R/library/base/R-ex/warning.R lib/R/library/base/R-ex/warnings.R @@ -1559,7 +1566,6 @@ lib/R/library/base/demo/plotmath.R lib/R/library/base/demo/recursion.R lib/R/library/base/demo/scoping.R lib/R/library/base/help/AIC -lib/R/library/base/help/AIC.logLik lib/R/library/base/help/AnIndex lib/R/library/base/help/Arithmetic lib/R/library/base/help/AsIs @@ -1579,6 +1585,8 @@ lib/R/library/base/help/Deprecated lib/R/library/base/help/Devices lib/R/library/base/help/Exponential lib/R/library/base/help/Extract +lib/R/library/base/help/Extract.data.frame +lib/R/library/base/help/Extract.factor lib/R/library/base/help/Extremes lib/R/library/base/help/FDist lib/R/library/base/help/Foreign @@ -1644,6 +1652,7 @@ lib/R/library/base/help/USArrests lib/R/library/base/help/USJudgeRatings lib/R/library/base/help/USPersonalExpenditure lib/R/library/base/help/Uniform +lib/R/library/base/help/UseMethod lib/R/library/base/help/VADeaths lib/R/library/base/help/Version lib/R/library/base/help/Weibull @@ -1674,6 +1683,7 @@ lib/R/library/base/help/args lib/R/library/base/help/array lib/R/library/base/help/arrows lib/R/library/base/help/as.POSIXlt +lib/R/library/base/help/as.data.frame lib/R/library/base/help/as.environment lib/R/library/base/help/as.function lib/R/library/base/help/assign @@ -1698,8 +1708,8 @@ lib/R/library/base/help/birthday lib/R/library/base/help/body lib/R/library/base/help/box lib/R/library/base/help/boxplot -lib/R/library/base/help/boxplot.formula lib/R/library/base/help/boxplot.stats +lib/R/library/base/help/bquote lib/R/library/base/help/browseEnv lib/R/library/base/help/browseURL lib/R/library/base/help/browser @@ -1738,6 +1748,7 @@ lib/R/library/base/help/commandArgs lib/R/library/base/help/comment lib/R/library/base/help/complete.cases lib/R/library/base/help/complex +lib/R/library/base/help/conditions lib/R/library/base/help/confint lib/R/library/base/help/conflicts lib/R/library/base/help/connections @@ -1763,6 +1774,7 @@ lib/R/library/base/help/data.class lib/R/library/base/help/data.frame lib/R/library/base/help/data.matrix lib/R/library/base/help/dataentry +lib/R/library/base/help/dataframeHelpers lib/R/library/base/help/date lib/R/library/base/help/dcf lib/R/library/base/help/debug @@ -1856,7 +1868,6 @@ lib/R/library/base/help/gl lib/R/library/base/help/glm lib/R/library/base/help/glm.control lib/R/library/base/help/glm.summaries -lib/R/library/base/help/glm.summary lib/R/library/base/help/gnome lib/R/library/base/help/gray lib/R/library/base/help/grep @@ -1902,7 +1913,6 @@ lib/R/library/base/help/layout lib/R/library/base/help/legend lib/R/library/base/help/length lib/R/library/base/help/levels -lib/R/library/base/help/levels.factor lib/R/library/base/help/library lib/R/library/base/help/library.dynam lib/R/library/base/help/license @@ -1912,7 +1922,6 @@ lib/R/library/base/help/list.files lib/R/library/base/help/lm lib/R/library/base/help/lm.influence lib/R/library/base/help/lm.summaries -lib/R/library/base/help/lm.summary lib/R/library/base/help/lmfit lib/R/library/base/help/load lib/R/library/base/help/localeconv @@ -1937,7 +1946,9 @@ lib/R/library/base/help/make.names lib/R/library/base/help/make.packages.html lib/R/library/base/help/make.socket lib/R/library/base/help/make.tables +lib/R/library/base/help/make.unique lib/R/library/base/help/makepredictcall +lib/R/library/base/help/manglePackageName lib/R/library/base/help/manova lib/R/library/base/help/mapply lib/R/library/base/help/margin.table @@ -2007,7 +2018,6 @@ lib/R/library/base/help/package.skeleton lib/R/library/base/help/packageStatus lib/R/library/base/help/page lib/R/library/base/help/pairs -lib/R/library/base/help/pairs.formula lib/R/library/base/help/palette lib/R/library/base/help/palettes lib/R/library/base/help/panel.smooth @@ -2021,6 +2031,7 @@ lib/R/library/base/help/phones lib/R/library/base/help/pictex lib/R/library/base/help/pie lib/R/library/base/help/plot +lib/R/library/base/help/plot.dataframe lib/R/library/base/help/plot.density lib/R/library/base/help/plot.design lib/R/library/base/help/plot.lm @@ -2104,8 +2115,10 @@ lib/R/library/base/help/rle lib/R/library/base/help/rm lib/R/library/base/help/round.POSIXt lib/R/library/base/help/row +lib/R/library/base/help/row.names lib/R/library/base/help/rowsum lib/R/library/base/help/rug +lib/R/library/base/help/sQuote lib/R/library/base/help/sample lib/R/library/base/help/save lib/R/library/base/help/savehistory @@ -2129,6 +2142,7 @@ lib/R/library/base/help/sink lib/R/library/base/help/sleep lib/R/library/base/help/slice.index lib/R/library/base/help/slotOp +lib/R/library/base/help/socketSelect lib/R/library/base/help/solve lib/R/library/base/help/sort lib/R/library/base/help/source @@ -2159,6 +2173,8 @@ lib/R/library/base/help/substr lib/R/library/base/help/sum lib/R/library/base/help/summary lib/R/library/base/help/summary.aov +lib/R/library/base/help/summary.glm +lib/R/library/base/help/summary.lm lib/R/library/base/help/summary.manova lib/R/library/base/help/summaryRprof lib/R/library/base/help/sunflowerplot @@ -2214,6 +2230,7 @@ lib/R/library/base/help/url.show lib/R/library/base/help/uspop lib/R/library/base/help/vcov lib/R/library/base/help/vector +lib/R/library/base/help/vignette lib/R/library/base/help/volcano lib/R/library/base/help/warning lib/R/library/base/help/warnings @@ -2242,7 +2259,6 @@ lib/R/library/base/help/zcbind.ts lib/R/library/base/help/zip.file.extract lib/R/library/base/html/00Index.html lib/R/library/base/html/AIC.html -lib/R/library/base/html/AIC.logLik.html lib/R/library/base/html/Arithmetic.html lib/R/library/base/html/AsIs.html lib/R/library/base/html/BATCH.html @@ -2260,6 +2276,8 @@ lib/R/library/base/html/Defunct.html lib/R/library/base/html/Deprecated.html lib/R/library/base/html/Devices.html lib/R/library/base/html/Exponential.html +lib/R/library/base/html/Extract.data.frame.html +lib/R/library/base/html/Extract.factor.html lib/R/library/base/html/Extract.html lib/R/library/base/html/Extremes.html lib/R/library/base/html/FDist.html @@ -2326,6 +2344,7 @@ lib/R/library/base/html/USArrests.html lib/R/library/base/html/USJudgeRatings.html lib/R/library/base/html/USPersonalExpenditure.html lib/R/library/base/html/Uniform.html +lib/R/library/base/html/UseMethod.html lib/R/library/base/html/VADeaths.html lib/R/library/base/html/Version.html lib/R/library/base/html/Weibull.html @@ -2356,6 +2375,7 @@ lib/R/library/base/html/args.html lib/R/library/base/html/array.html lib/R/library/base/html/arrows.html lib/R/library/base/html/as.POSIXlt.html +lib/R/library/base/html/as.data.frame.html lib/R/library/base/html/as.environment.html lib/R/library/base/html/as.function.html lib/R/library/base/html/assign.html @@ -2379,9 +2399,9 @@ lib/R/library/base/html/bindenv.html lib/R/library/base/html/birthday.html lib/R/library/base/html/body.html lib/R/library/base/html/box.html -lib/R/library/base/html/boxplot.formula.html lib/R/library/base/html/boxplot.html lib/R/library/base/html/boxplot.stats.html +lib/R/library/base/html/bquote.html lib/R/library/base/html/browseEnv.html lib/R/library/base/html/browseURL.html lib/R/library/base/html/browser.html @@ -2420,6 +2440,7 @@ lib/R/library/base/html/commandArgs.html lib/R/library/base/html/comment.html lib/R/library/base/html/complete.cases.html lib/R/library/base/html/complex.html +lib/R/library/base/html/conditions.html lib/R/library/base/html/confint.html lib/R/library/base/html/conflicts.html lib/R/library/base/html/connections.html @@ -2445,6 +2466,7 @@ lib/R/library/base/html/data.frame.html lib/R/library/base/html/data.html lib/R/library/base/html/data.matrix.html lib/R/library/base/html/dataentry.html +lib/R/library/base/html/dataframeHelpers.html lib/R/library/base/html/date.html lib/R/library/base/html/dcf.html lib/R/library/base/html/debug.html @@ -2538,7 +2560,6 @@ lib/R/library/base/html/gl.html lib/R/library/base/html/glm.control.html lib/R/library/base/html/glm.html lib/R/library/base/html/glm.summaries.html -lib/R/library/base/html/glm.summary.html lib/R/library/base/html/gnome.html lib/R/library/base/html/gray.html lib/R/library/base/html/grep.html @@ -2583,7 +2604,6 @@ lib/R/library/base/html/lapply.html lib/R/library/base/html/layout.html lib/R/library/base/html/legend.html lib/R/library/base/html/length.html -lib/R/library/base/html/levels.factor.html lib/R/library/base/html/levels.html lib/R/library/base/html/library.dynam.html lib/R/library/base/html/library.html @@ -2594,7 +2614,6 @@ lib/R/library/base/html/list.html lib/R/library/base/html/lm.html lib/R/library/base/html/lm.influence.html lib/R/library/base/html/lm.summaries.html -lib/R/library/base/html/lm.summary.html lib/R/library/base/html/lmfit.html lib/R/library/base/html/load.html lib/R/library/base/html/localeconv.html @@ -2619,7 +2638,9 @@ lib/R/library/base/html/make.names.html lib/R/library/base/html/make.packages.html.html lib/R/library/base/html/make.socket.html lib/R/library/base/html/make.tables.html +lib/R/library/base/html/make.unique.html lib/R/library/base/html/makepredictcall.html +lib/R/library/base/html/manglePackageName.html lib/R/library/base/html/manova.html lib/R/library/base/html/mapply.html lib/R/library/base/html/margin.table.html @@ -2688,7 +2709,6 @@ lib/R/library/base/html/package.dependencies.html lib/R/library/base/html/package.skeleton.html lib/R/library/base/html/packageStatus.html lib/R/library/base/html/page.html -lib/R/library/base/html/pairs.formula.html lib/R/library/base/html/pairs.html lib/R/library/base/html/palette.html lib/R/library/base/html/palettes.html @@ -2702,6 +2722,7 @@ lib/R/library/base/html/persp.html lib/R/library/base/html/phones.html lib/R/library/base/html/pictex.html lib/R/library/base/html/pie.html +lib/R/library/base/html/plot.dataframe.html lib/R/library/base/html/plot.density.html lib/R/library/base/html/plot.design.html lib/R/library/base/html/plot.html @@ -2786,8 +2807,10 @@ lib/R/library/base/html/rle.html lib/R/library/base/html/rm.html lib/R/library/base/html/round.POSIXt.html lib/R/library/base/html/row.html +lib/R/library/base/html/row.names.html lib/R/library/base/html/rowsum.html lib/R/library/base/html/rug.html +lib/R/library/base/html/sQuote.html lib/R/library/base/html/sample.html lib/R/library/base/html/save.html lib/R/library/base/html/savehistory.html @@ -2811,6 +2834,7 @@ lib/R/library/base/html/sink.html lib/R/library/base/html/sleep.html lib/R/library/base/html/slice.index.html lib/R/library/base/html/slotOp.html +lib/R/library/base/html/socketSelect.html lib/R/library/base/html/solve.html lib/R/library/base/html/sort.html lib/R/library/base/html/source.html @@ -2840,7 +2864,9 @@ lib/R/library/base/html/substitute.html lib/R/library/base/html/substr.html lib/R/library/base/html/sum.html lib/R/library/base/html/summary.aov.html +lib/R/library/base/html/summary.glm.html lib/R/library/base/html/summary.html +lib/R/library/base/html/summary.lm.html lib/R/library/base/html/summary.manova.html lib/R/library/base/html/summaryRprof.html lib/R/library/base/html/sunflowerplot.html @@ -2896,6 +2922,7 @@ lib/R/library/base/html/url.show.html lib/R/library/base/html/uspop.html lib/R/library/base/html/vcov.html lib/R/library/base/html/vector.html +lib/R/library/base/html/vignette.html lib/R/library/base/html/volcano.html lib/R/library/base/html/warning.html lib/R/library/base/html/warnings.html @@ -2922,7 +2949,6 @@ lib/R/library/base/html/zMethods.html lib/R/library/base/html/zScript.html lib/R/library/base/html/zcbind.ts.html lib/R/library/base/html/zip.file.extract.html -lib/R/library/base/latex/AIC.logLik.tex lib/R/library/base/latex/AIC.tex lib/R/library/base/latex/Arithmetic.tex lib/R/library/base/latex/AsIs.tex @@ -2941,6 +2967,8 @@ lib/R/library/base/latex/Defunct.tex lib/R/library/base/latex/Deprecated.tex lib/R/library/base/latex/Devices.tex lib/R/library/base/latex/Exponential.tex +lib/R/library/base/latex/Extract.data.frame.tex +lib/R/library/base/latex/Extract.factor.tex lib/R/library/base/latex/Extract.tex lib/R/library/base/latex/Extremes.tex lib/R/library/base/latex/FDist.tex @@ -3007,6 +3035,7 @@ lib/R/library/base/latex/USArrests.tex lib/R/library/base/latex/USJudgeRatings.tex lib/R/library/base/latex/USPersonalExpenditure.tex lib/R/library/base/latex/Uniform.tex +lib/R/library/base/latex/UseMethod.tex lib/R/library/base/latex/VADeaths.tex lib/R/library/base/latex/Version.tex lib/R/library/base/latex/Weibull.tex @@ -3037,6 +3066,7 @@ lib/R/library/base/latex/args.tex lib/R/library/base/latex/array.tex lib/R/library/base/latex/arrows.tex lib/R/library/base/latex/as.POSIXlt.tex +lib/R/library/base/latex/as.data.frame.tex lib/R/library/base/latex/as.environment.tex lib/R/library/base/latex/as.function.tex lib/R/library/base/latex/assign.tex @@ -3060,9 +3090,9 @@ lib/R/library/base/latex/bindenv.tex lib/R/library/base/latex/birthday.tex lib/R/library/base/latex/body.tex lib/R/library/base/latex/box.tex -lib/R/library/base/latex/boxplot.formula.tex lib/R/library/base/latex/boxplot.stats.tex lib/R/library/base/latex/boxplot.tex +lib/R/library/base/latex/bquote.tex lib/R/library/base/latex/browseEnv.tex lib/R/library/base/latex/browseURL.tex lib/R/library/base/latex/browser.tex @@ -3101,6 +3131,7 @@ lib/R/library/base/latex/commandArgs.tex lib/R/library/base/latex/comment.tex lib/R/library/base/latex/complete.cases.tex lib/R/library/base/latex/complex.tex +lib/R/library/base/latex/conditions.tex lib/R/library/base/latex/confint.tex lib/R/library/base/latex/conflicts.tex lib/R/library/base/latex/connections.tex @@ -3126,6 +3157,7 @@ lib/R/library/base/latex/data.frame.tex lib/R/library/base/latex/data.matrix.tex lib/R/library/base/latex/data.tex lib/R/library/base/latex/dataentry.tex +lib/R/library/base/latex/dataframeHelpers.tex lib/R/library/base/latex/date.tex lib/R/library/base/latex/dcf.tex lib/R/library/base/latex/debug.tex @@ -3218,7 +3250,6 @@ lib/R/library/base/latex/getwd.tex lib/R/library/base/latex/gl.tex lib/R/library/base/latex/glm.control.tex lib/R/library/base/latex/glm.summaries.tex -lib/R/library/base/latex/glm.summary.tex lib/R/library/base/latex/glm.tex lib/R/library/base/latex/gnome.tex lib/R/library/base/latex/gray.tex @@ -3264,7 +3295,6 @@ lib/R/library/base/latex/lapply.tex lib/R/library/base/latex/layout.tex lib/R/library/base/latex/legend.tex lib/R/library/base/latex/length.tex -lib/R/library/base/latex/levels.factor.tex lib/R/library/base/latex/levels.tex lib/R/library/base/latex/library.dynam.tex lib/R/library/base/latex/library.tex @@ -3274,7 +3304,6 @@ lib/R/library/base/latex/list.files.tex lib/R/library/base/latex/list.tex lib/R/library/base/latex/lm.influence.tex lib/R/library/base/latex/lm.summaries.tex -lib/R/library/base/latex/lm.summary.tex lib/R/library/base/latex/lm.tex lib/R/library/base/latex/lmfit.tex lib/R/library/base/latex/load.tex @@ -3300,7 +3329,9 @@ lib/R/library/base/latex/make.names.tex lib/R/library/base/latex/make.packages.html.tex lib/R/library/base/latex/make.socket.tex lib/R/library/base/latex/make.tables.tex +lib/R/library/base/latex/make.unique.tex lib/R/library/base/latex/makepredictcall.tex +lib/R/library/base/latex/manglePackageName.tex lib/R/library/base/latex/manova.tex lib/R/library/base/latex/mapply.tex lib/R/library/base/latex/margin.table.tex @@ -3369,7 +3400,6 @@ lib/R/library/base/latex/package.dependencies.tex lib/R/library/base/latex/package.skeleton.tex lib/R/library/base/latex/packageStatus.tex lib/R/library/base/latex/page.tex -lib/R/library/base/latex/pairs.formula.tex lib/R/library/base/latex/pairs.tex lib/R/library/base/latex/palette.tex lib/R/library/base/latex/palettes.tex @@ -3383,6 +3413,7 @@ lib/R/library/base/latex/persp.tex lib/R/library/base/latex/phones.tex lib/R/library/base/latex/pictex.tex lib/R/library/base/latex/pie.tex +lib/R/library/base/latex/plot.dataframe.tex lib/R/library/base/latex/plot.density.tex lib/R/library/base/latex/plot.design.tex lib/R/library/base/latex/plot.lm.tex @@ -3466,9 +3497,11 @@ lib/R/library/base/latex/rivers.tex lib/R/library/base/latex/rle.tex lib/R/library/base/latex/rm.tex lib/R/library/base/latex/round.POSIXt.tex +lib/R/library/base/latex/row.names.tex lib/R/library/base/latex/row.tex lib/R/library/base/latex/rowsum.tex lib/R/library/base/latex/rug.tex +lib/R/library/base/latex/sQuote.tex lib/R/library/base/latex/sample.tex lib/R/library/base/latex/save.tex lib/R/library/base/latex/savehistory.tex @@ -3492,6 +3525,7 @@ lib/R/library/base/latex/sink.tex lib/R/library/base/latex/sleep.tex lib/R/library/base/latex/slice.index.tex lib/R/library/base/latex/slotOp.tex +lib/R/library/base/latex/socketSelect.tex lib/R/library/base/latex/solve.tex lib/R/library/base/latex/sort.tex lib/R/library/base/latex/source.tex @@ -3521,6 +3555,8 @@ lib/R/library/base/latex/substitute.tex lib/R/library/base/latex/substr.tex lib/R/library/base/latex/sum.tex lib/R/library/base/latex/summary.aov.tex +lib/R/library/base/latex/summary.glm.tex +lib/R/library/base/latex/summary.lm.tex lib/R/library/base/latex/summary.manova.tex lib/R/library/base/latex/summary.tex lib/R/library/base/latex/summaryRprof.tex @@ -3577,6 +3613,7 @@ lib/R/library/base/latex/url.show.tex lib/R/library/base/latex/uspop.tex lib/R/library/base/latex/vcov.tex lib/R/library/base/latex/vector.tex +lib/R/library/base/latex/vignette.tex lib/R/library/base/latex/volcano.tex lib/R/library/base/latex/warning.tex lib/R/library/base/latex/warnings.tex @@ -3609,6 +3646,7 @@ lib/R/library/boot/DESCRIPTION lib/R/library/boot/INDEX lib/R/library/boot/Meta/Rd.rds lib/R/library/boot/Meta/data.rds +lib/R/library/boot/Meta/hsearch.rds lib/R/library/boot/NAMESPACE lib/R/library/boot/R-ex/Imp.Estimates.R lib/R/library/boot/R-ex/abc.ci.R @@ -3636,7 +3674,6 @@ lib/R/library/boot/R-ex/tilt.boot.R lib/R/library/boot/R-ex/tsboot.R lib/R/library/boot/R-ex/var.linear.R lib/R/library/boot/R/boot -lib/R/library/boot/data/00Index lib/R/library/boot/data/acme.rda lib/R/library/boot/data/aids.rda lib/R/library/boot/data/aircondit.rda @@ -3702,8 +3739,6 @@ lib/R/library/boot/help/boot lib/R/library/boot/help/boot-practicals lib/R/library/boot/help/boot.array lib/R/library/boot/help/boot.ci -lib/R/library/boot/help/boot.object -lib/R/library/boot/help/bootci.object lib/R/library/boot/help/brambles lib/R/library/boot/help/breslow lib/R/library/boot/help/calcium @@ -3793,8 +3828,6 @@ lib/R/library/boot/html/boot-practicals.html lib/R/library/boot/html/boot.array.html lib/R/library/boot/html/boot.ci.html lib/R/library/boot/html/boot.html -lib/R/library/boot/html/boot.object.html -lib/R/library/boot/html/bootci.object.html lib/R/library/boot/html/brambles.html lib/R/library/boot/html/breslow.html lib/R/library/boot/html/calcium.html @@ -3882,9 +3915,7 @@ lib/R/library/boot/latex/bigcity.tex lib/R/library/boot/latex/boot-practicals.tex lib/R/library/boot/latex/boot.array.tex lib/R/library/boot/latex/boot.ci.tex -lib/R/library/boot/latex/boot.object.tex lib/R/library/boot/latex/boot.tex -lib/R/library/boot/latex/bootci.object.tex lib/R/library/boot/latex/brambles.tex lib/R/library/boot/latex/breslow.tex lib/R/library/boot/latex/calcium.tex @@ -3965,6 +3996,7 @@ lib/R/library/class/DESCRIPTION lib/R/library/class/INDEX lib/R/library/class/LICENCE lib/R/library/class/Meta/Rd.rds +lib/R/library/class/Meta/hsearch.rds lib/R/library/class/NAMESPACE lib/R/library/class/R-ex/SOM.R lib/R/library/class/R-ex/batchSOM.R @@ -3996,6 +4028,7 @@ lib/R/library/class/help/lvqtest lib/R/library/class/help/multiedit lib/R/library/class/help/olvq1 lib/R/library/class/help/reduce.nn +lib/R/library/class/help/somgrid lib/R/library/class/html/00Index.html lib/R/library/class/html/SOM.html lib/R/library/class/html/batchSOM.html @@ -4011,6 +4044,7 @@ lib/R/library/class/html/lvqtest.html lib/R/library/class/html/multiedit.html lib/R/library/class/html/olvq1.html lib/R/library/class/html/reduce.nn.html +lib/R/library/class/html/somgrid.html lib/R/library/class/latex/SOM.tex lib/R/library/class/latex/batchSOM.tex lib/R/library/class/latex/condense.tex @@ -4025,6 +4059,7 @@ lib/R/library/class/latex/lvqtest.tex lib/R/library/class/latex/multiedit.tex lib/R/library/class/latex/olvq1.tex lib/R/library/class/latex/reduce.nn.tex +lib/R/library/class/latex/somgrid.tex lib/R/library/class/libs/class.so lib/R/library/class/man/class.Rd lib/R/library/cluster/CONTENTS @@ -4032,6 +4067,7 @@ lib/R/library/cluster/DESCRIPTION lib/R/library/cluster/INDEX lib/R/library/cluster/Meta/Rd.rds lib/R/library/cluster/Meta/data.rds +lib/R/library/cluster/Meta/hsearch.rds lib/R/library/cluster/R-ex/agnes.R lib/R/library/cluster/R-ex/agriculture.R lib/R/library/cluster/R-ex/animals.R @@ -4061,7 +4097,6 @@ lib/R/library/cluster/R-ex/summary.agnes.R lib/R/library/cluster/R-ex/summary.clara.R lib/R/library/cluster/R-ex/volume.ellipsoid.R lib/R/library/cluster/R/cluster -lib/R/library/cluster/data/00Index lib/R/library/cluster/data/agriculture.tab lib/R/library/cluster/data/animals.tab lib/R/library/cluster/data/flower.R @@ -4236,6 +4271,7 @@ lib/R/library/ctest/CONTENTS lib/R/library/ctest/DESCRIPTION lib/R/library/ctest/INDEX lib/R/library/ctest/Meta/Rd.rds +lib/R/library/ctest/Meta/hsearch.rds lib/R/library/ctest/NAMESPACE lib/R/library/ctest/R-ex/ansari.test.R lib/R/library/ctest/R-ex/bartlett.test.R @@ -4361,6 +4397,7 @@ lib/R/library/eda/DESCRIPTION lib/R/library/eda/INDEX lib/R/library/eda/Meta/Rd.rds lib/R/library/eda/Meta/demo.rds +lib/R/library/eda/Meta/hsearch.rds lib/R/library/eda/NAMESPACE lib/R/library/eda/R-ex/line.R lib/R/library/eda/R-ex/medpolish.R @@ -4385,6 +4422,7 @@ lib/R/library/foreign/CONTENTS lib/R/library/foreign/DESCRIPTION lib/R/library/foreign/INDEX lib/R/library/foreign/Meta/Rd.rds +lib/R/library/foreign/Meta/hsearch.rds lib/R/library/foreign/R-ex/lookup.xport.R lib/R/library/foreign/R-ex/read.S.R lib/R/library/foreign/R-ex/read.dta.R @@ -4430,48 +4468,35 @@ lib/R/library/grid/CONTENTS lib/R/library/grid/DESCRIPTION lib/R/library/grid/INDEX lib/R/library/grid/Meta/Rd.rds +lib/R/library/grid/Meta/hsearch.rds +lib/R/library/grid/NAMESPACE lib/R/library/grid/R-ex/Grid.R lib/R/library/grid/R-ex/convertNative.R -lib/R/library/grid/R-ex/current.viewport.R lib/R/library/grid/R-ex/gpar.R -lib/R/library/grid/R-ex/grid.circle.R +lib/R/library/grid/R-ex/grid.arrows.R lib/R/library/grid/R-ex/grid.collection.R +lib/R/library/grid/R-ex/grid.convert.R lib/R/library/grid/R-ex/grid.copy.R lib/R/library/grid/R-ex/grid.draw.R lib/R/library/grid/R-ex/grid.edit.R lib/R/library/grid/R-ex/grid.frame.R lib/R/library/grid/R-ex/grid.get.R -lib/R/library/grid/R-ex/grid.grill.R lib/R/library/grid/R-ex/grid.grob.R lib/R/library/grid/R-ex/grid.layout.R -lib/R/library/grid/R-ex/grid.line.to.R -lib/R/library/grid/R-ex/grid.lines.R +lib/R/library/grid/R-ex/grid.locator.R lib/R/library/grid/R-ex/grid.move.to.R -lib/R/library/grid/R-ex/grid.newpage.R -lib/R/library/grid/R-ex/grid.pack.R -lib/R/library/grid/R-ex/grid.place.R lib/R/library/grid/R-ex/grid.plot.and.legend.R -lib/R/library/grid/R-ex/grid.points.R -lib/R/library/grid/R-ex/grid.polygon.R -lib/R/library/grid/R-ex/grid.rect.R -lib/R/library/grid/R-ex/grid.segments.R -lib/R/library/grid/R-ex/grid.set.R lib/R/library/grid/R-ex/grid.show.layout.R lib/R/library/grid/R-ex/grid.show.viewport.R lib/R/library/grid/R-ex/grid.text.R -lib/R/library/grid/R-ex/grid.xaxis.R -lib/R/library/grid/R-ex/grid.yaxis.R -lib/R/library/grid/R-ex/pop.viewport.R -lib/R/library/grid/R-ex/push.viewport.R lib/R/library/grid/R-ex/unit.R -lib/R/library/grid/R-ex/unit.c.R -lib/R/library/grid/R-ex/unit.length.R lib/R/library/grid/R-ex/unit.pmin.R lib/R/library/grid/R-ex/unit.rep.R lib/R/library/grid/R-ex/viewport.R lib/R/library/grid/R/grid -lib/R/library/grid/doc/changes_0.7-4.txt -lib/R/library/grid/doc/uguide_0.7-4.pdf +lib/R/library/grid/doc/changes.txt +lib/R/library/grid/doc/index.html +lib/R/library/grid/doc/uguide.pdf lib/R/library/grid/help/AnIndex lib/R/library/grid/help/Grid lib/R/library/grid/help/absolute.size @@ -4480,8 +4505,10 @@ lib/R/library/grid/help/current.viewport lib/R/library/grid/help/dataViewport lib/R/library/grid/help/gpar lib/R/library/grid/help/grid-internal +lib/R/library/grid/help/grid.arrows lib/R/library/grid/help/grid.circle lib/R/library/grid/help/grid.collection +lib/R/library/grid/help/grid.convert lib/R/library/grid/help/grid.copy lib/R/library/grid/help/grid.display.list lib/R/library/grid/help/grid.draw @@ -4491,8 +4518,8 @@ lib/R/library/grid/help/grid.get lib/R/library/grid/help/grid.grill lib/R/library/grid/help/grid.grob lib/R/library/grid/help/grid.layout -lib/R/library/grid/help/grid.line.to lib/R/library/grid/help/grid.lines +lib/R/library/grid/help/grid.locator lib/R/library/grid/help/grid.move.to lib/R/library/grid/help/grid.newpage lib/R/library/grid/help/grid.pack @@ -4528,8 +4555,10 @@ lib/R/library/grid/html/current.viewport.html lib/R/library/grid/html/dataViewport.html lib/R/library/grid/html/gpar.html lib/R/library/grid/html/grid-internal.html +lib/R/library/grid/html/grid.arrows.html lib/R/library/grid/html/grid.circle.html lib/R/library/grid/html/grid.collection.html +lib/R/library/grid/html/grid.convert.html lib/R/library/grid/html/grid.copy.html lib/R/library/grid/html/grid.display.list.html lib/R/library/grid/html/grid.draw.html @@ -4539,8 +4568,8 @@ lib/R/library/grid/html/grid.get.html lib/R/library/grid/html/grid.grill.html lib/R/library/grid/html/grid.grob.html lib/R/library/grid/html/grid.layout.html -lib/R/library/grid/html/grid.line.to.html lib/R/library/grid/html/grid.lines.html +lib/R/library/grid/html/grid.locator.html lib/R/library/grid/html/grid.move.to.html lib/R/library/grid/html/grid.newpage.html lib/R/library/grid/html/grid.pack.html @@ -4575,8 +4604,10 @@ lib/R/library/grid/latex/current.viewport.tex lib/R/library/grid/latex/dataViewport.tex lib/R/library/grid/latex/gpar.tex lib/R/library/grid/latex/grid-internal.tex +lib/R/library/grid/latex/grid.arrows.tex lib/R/library/grid/latex/grid.circle.tex lib/R/library/grid/latex/grid.collection.tex +lib/R/library/grid/latex/grid.convert.tex lib/R/library/grid/latex/grid.copy.tex lib/R/library/grid/latex/grid.display.list.tex lib/R/library/grid/latex/grid.draw.tex @@ -4586,8 +4617,8 @@ lib/R/library/grid/latex/grid.get.tex lib/R/library/grid/latex/grid.grill.tex lib/R/library/grid/latex/grid.grob.tex lib/R/library/grid/latex/grid.layout.tex -lib/R/library/grid/latex/grid.line.to.tex lib/R/library/grid/latex/grid.lines.tex +lib/R/library/grid/latex/grid.locator.tex lib/R/library/grid/latex/grid.move.to.tex lib/R/library/grid/latex/grid.newpage.tex lib/R/library/grid/latex/grid.pack.tex @@ -4624,6 +4655,8 @@ lib/R/library/lattice/INDEX lib/R/library/lattice/Meta/Rd.rds lib/R/library/lattice/Meta/data.rds lib/R/library/lattice/Meta/demo.rds +lib/R/library/lattice/Meta/hsearch.rds +lib/R/library/lattice/NAMESPACE lib/R/library/lattice/R-ex/cloud.R lib/R/library/lattice/R-ex/histogram.R lib/R/library/lattice/R-ex/levelplot.R @@ -4639,7 +4672,6 @@ lib/R/library/lattice/R-ex/tmd.R lib/R/library/lattice/R-ex/trellis.par.get.R lib/R/library/lattice/R-ex/xyplot.R lib/R/library/lattice/R/lattice -lib/R/library/lattice/data/00Index lib/R/library/lattice/data/barley.R lib/R/library/lattice/data/environmental.R lib/R/library/lattice/data/ethanol.R @@ -4650,12 +4682,12 @@ lib/R/library/lattice/demo/00Index lib/R/library/lattice/demo/lattice.R lib/R/library/lattice/help/AnIndex lib/R/library/lattice/help/Lattice +lib/R/library/lattice/help/Rows lib/R/library/lattice/help/banking lib/R/library/lattice/help/cloud lib/R/library/lattice/help/draw.colorkey lib/R/library/lattice/help/draw.key lib/R/library/lattice/help/histogram -lib/R/library/lattice/help/lattice-internal lib/R/library/lattice/help/latticeParseFormula lib/R/library/lattice/help/levelplot lib/R/library/lattice/help/llines @@ -4694,12 +4726,12 @@ lib/R/library/lattice/help/update.trellis lib/R/library/lattice/help/xyplot lib/R/library/lattice/html/00Index.html lib/R/library/lattice/html/Lattice.html +lib/R/library/lattice/html/Rows.html lib/R/library/lattice/html/banking.html lib/R/library/lattice/html/cloud.html lib/R/library/lattice/html/draw.colorkey.html lib/R/library/lattice/html/draw.key.html lib/R/library/lattice/html/histogram.html -lib/R/library/lattice/html/lattice-internal.html lib/R/library/lattice/html/latticeParseFormula.html lib/R/library/lattice/html/levelplot.html lib/R/library/lattice/html/llines.html @@ -4737,12 +4769,12 @@ lib/R/library/lattice/html/trellis.par.get.html lib/R/library/lattice/html/update.trellis.html lib/R/library/lattice/html/xyplot.html lib/R/library/lattice/latex/Lattice.tex +lib/R/library/lattice/latex/Rows.tex lib/R/library/lattice/latex/banking.tex lib/R/library/lattice/latex/cloud.tex lib/R/library/lattice/latex/draw.colorkey.tex lib/R/library/lattice/latex/draw.key.tex lib/R/library/lattice/latex/histogram.tex -lib/R/library/lattice/latex/lattice-internal.tex lib/R/library/lattice/latex/latticeParseFormula.tex lib/R/library/lattice/latex/levelplot.tex lib/R/library/lattice/latex/llines.tex @@ -4785,6 +4817,7 @@ lib/R/library/lqs/CONTENTS lib/R/library/lqs/DESCRIPTION lib/R/library/lqs/INDEX lib/R/library/lqs/Meta/Rd.rds +lib/R/library/lqs/Meta/hsearch.rds lib/R/library/lqs/NAMESPACE lib/R/library/lqs/R-ex/cov.rob.R lib/R/library/lqs/R-ex/lqs.R @@ -4807,10 +4840,13 @@ lib/R/library/methods/CONTENTS lib/R/library/methods/DESCRIPTION lib/R/library/methods/INDEX lib/R/library/methods/Meta/Rd.rds +lib/R/library/methods/Meta/hsearch.rds +lib/R/library/methods/NAMESPACE lib/R/library/methods/R-ex/GenericFunctions.R lib/R/library/methods/R-ex/NextMethod.R lib/R/library/methods/R-ex/as.R lib/R/library/methods/R-ex/getClass.R +lib/R/library/methods/R-ex/getMethod.R lib/R/library/methods/R-ex/getPackageName.R lib/R/library/methods/R-ex/hasArg.R lib/R/library/methods/R-ex/is.R @@ -4819,6 +4855,7 @@ lib/R/library/methods/R-ex/new.R lib/R/library/methods/R-ex/promptClass.R lib/R/library/methods/R-ex/representation.R lib/R/library/methods/R-ex/setClass.R +lib/R/library/methods/R-ex/setClassUnion.R lib/R/library/methods/R-ex/setGeneric.R lib/R/library/methods/R-ex/setMethod.R lib/R/library/methods/R-ex/setOldClass.R @@ -4831,6 +4868,7 @@ lib/R/library/methods/R/methods lib/R/library/methods/help/AnIndex lib/R/library/methods/help/BasicClasses lib/R/library/methods/help/Classes +lib/R/library/methods/help/Documentation lib/R/library/methods/help/EmptyMethodsList-class lib/R/library/methods/help/EnvironmentClass lib/R/library/methods/help/GenericFunctions @@ -4857,15 +4895,18 @@ lib/R/library/methods/help/getClass lib/R/library/methods/help/getMethod lib/R/library/methods/help/getPackageName lib/R/library/methods/help/hasArg +lib/R/library/methods/help/initialize-methods lib/R/library/methods/help/is lib/R/library/methods/help/isSealedMethod lib/R/library/methods/help/languageEl lib/R/library/methods/help/methodUtilities lib/R/library/methods/help/new +lib/R/library/methods/help/oldGet lib/R/library/methods/help/promptClass lib/R/library/methods/help/promptMethods lib/R/library/methods/help/representation lib/R/library/methods/help/setClass +lib/R/library/methods/help/setClassUnion lib/R/library/methods/help/setGeneric lib/R/library/methods/help/setMethod lib/R/library/methods/help/setOldClass @@ -4880,6 +4921,7 @@ lib/R/library/methods/help/zBasicFunsList lib/R/library/methods/html/00Index.html lib/R/library/methods/html/BasicClasses.html lib/R/library/methods/html/Classes.html +lib/R/library/methods/html/Documentation.html lib/R/library/methods/html/EmptyMethodsList-class.html lib/R/library/methods/html/EnvironmentClass.html lib/R/library/methods/html/GenericFunctions.html @@ -4906,15 +4948,18 @@ lib/R/library/methods/html/getClass.html lib/R/library/methods/html/getMethod.html lib/R/library/methods/html/getPackageName.html lib/R/library/methods/html/hasArg.html +lib/R/library/methods/html/initialize-methods.html lib/R/library/methods/html/is.html lib/R/library/methods/html/isSealedMethod.html lib/R/library/methods/html/languageEl.html lib/R/library/methods/html/methodUtilities.html lib/R/library/methods/html/new.html +lib/R/library/methods/html/oldGet.html lib/R/library/methods/html/promptClass.html lib/R/library/methods/html/promptMethods.html lib/R/library/methods/html/representation.html lib/R/library/methods/html/setClass.html +lib/R/library/methods/html/setClassUnion.html lib/R/library/methods/html/setGeneric.html lib/R/library/methods/html/setMethod.html lib/R/library/methods/html/setOldClass.html @@ -4928,6 +4973,7 @@ lib/R/library/methods/html/validObject.html lib/R/library/methods/html/zBasicFunsList.html lib/R/library/methods/latex/BasicClasses.tex lib/R/library/methods/latex/Classes.tex +lib/R/library/methods/latex/Documentation.tex lib/R/library/methods/latex/EmptyMethodsList-class.tex lib/R/library/methods/latex/EnvironmentClass.tex lib/R/library/methods/latex/GenericFunctions.tex @@ -4954,15 +5000,18 @@ lib/R/library/methods/latex/getClass.tex lib/R/library/methods/latex/getMethod.tex lib/R/library/methods/latex/getPackageName.tex lib/R/library/methods/latex/hasArg.tex +lib/R/library/methods/latex/initialize-methods.tex lib/R/library/methods/latex/is.tex lib/R/library/methods/latex/isSealedMethod.tex lib/R/library/methods/latex/languageEl.tex lib/R/library/methods/latex/methodUtilities.tex lib/R/library/methods/latex/new.tex +lib/R/library/methods/latex/oldGet.tex lib/R/library/methods/latex/promptClass.tex lib/R/library/methods/latex/promptMethods.tex lib/R/library/methods/latex/representation.tex lib/R/library/methods/latex/setClass.tex +lib/R/library/methods/latex/setClassUnion.tex lib/R/library/methods/latex/setGeneric.tex lib/R/library/methods/latex/setMethod.tex lib/R/library/methods/latex/setOldClass.tex @@ -4980,114 +5029,164 @@ lib/R/library/mgcv/CONTENTS lib/R/library/mgcv/DESCRIPTION lib/R/library/mgcv/INDEX lib/R/library/mgcv/Meta/Rd.rds +lib/R/library/mgcv/Meta/hsearch.rds lib/R/library/mgcv/R-ex/GAMsetup.R lib/R/library/mgcv/R-ex/QT.R +lib/R/library/mgcv/R-ex/exclude.too.far.R lib/R/library/mgcv/R-ex/gam.R lib/R/library/mgcv/R-ex/gam.check.R lib/R/library/mgcv/R-ex/gam.models.R +lib/R/library/mgcv/R-ex/gam.neg.bin.R lib/R/library/mgcv/R-ex/gam.side.conditions.R lib/R/library/mgcv/R-ex/mgcv.R lib/R/library/mgcv/R-ex/mono.con.R lib/R/library/mgcv/R-ex/null.space.dimension.R lib/R/library/mgcv/R-ex/pcls.R -lib/R/library/mgcv/R-ex/persp.gam.R lib/R/library/mgcv/R-ex/plot.gam.R lib/R/library/mgcv/R-ex/predict.gam.R lib/R/library/mgcv/R-ex/s.R lib/R/library/mgcv/R-ex/summary.gam.R lib/R/library/mgcv/R-ex/uniquecombs.R +lib/R/library/mgcv/R-ex/vis.gam.R lib/R/library/mgcv/R/mgcv lib/R/library/mgcv/help/AnIndex lib/R/library/mgcv/help/GAMsetup lib/R/library/mgcv/help/QT +lib/R/library/mgcv/help/exclude.too.far +lib/R/library/mgcv/help/full.score lib/R/library/mgcv/help/gam lib/R/library/mgcv/help/gam.check lib/R/library/mgcv/help/gam.control lib/R/library/mgcv/help/gam.fit lib/R/library/mgcv/help/gam.models -lib/R/library/mgcv/help/gam.nbut +lib/R/library/mgcv/help/gam.neg.bin lib/R/library/mgcv/help/gam.parser lib/R/library/mgcv/help/gam.selection lib/R/library/mgcv/help/gam.setup lib/R/library/mgcv/help/gam.side.conditions -lib/R/library/mgcv/help/get.family +lib/R/library/mgcv/help/magic +lib/R/library/mgcv/help/magic.post.proc lib/R/library/mgcv/help/mgcv lib/R/library/mgcv/help/mono.con -lib/R/library/mgcv/help/neg.binom +lib/R/library/mgcv/help/mroot lib/R/library/mgcv/help/null.space.dimension lib/R/library/mgcv/help/pcls -lib/R/library/mgcv/help/persp.gam lib/R/library/mgcv/help/plot.gam lib/R/library/mgcv/help/predict.gam lib/R/library/mgcv/help/print.gam lib/R/library/mgcv/help/residuals.gam lib/R/library/mgcv/help/s lib/R/library/mgcv/help/summary.gam -lib/R/library/mgcv/help/theta.maxl lib/R/library/mgcv/help/uniquecombs +lib/R/library/mgcv/help/vis.gam lib/R/library/mgcv/html/00Index.html lib/R/library/mgcv/html/GAMsetup.html lib/R/library/mgcv/html/QT.html +lib/R/library/mgcv/html/exclude.too.far.html +lib/R/library/mgcv/html/full.score.html lib/R/library/mgcv/html/gam.check.html lib/R/library/mgcv/html/gam.control.html lib/R/library/mgcv/html/gam.fit.html lib/R/library/mgcv/html/gam.html lib/R/library/mgcv/html/gam.models.html -lib/R/library/mgcv/html/gam.nbut.html +lib/R/library/mgcv/html/gam.neg.bin.html lib/R/library/mgcv/html/gam.parser.html lib/R/library/mgcv/html/gam.selection.html lib/R/library/mgcv/html/gam.setup.html lib/R/library/mgcv/html/gam.side.conditions.html -lib/R/library/mgcv/html/get.family.html +lib/R/library/mgcv/html/magic.html +lib/R/library/mgcv/html/magic.post.proc.html lib/R/library/mgcv/html/mgcv.html lib/R/library/mgcv/html/mono.con.html -lib/R/library/mgcv/html/neg.binom.html +lib/R/library/mgcv/html/mroot.html lib/R/library/mgcv/html/null.space.dimension.html lib/R/library/mgcv/html/pcls.html -lib/R/library/mgcv/html/persp.gam.html lib/R/library/mgcv/html/plot.gam.html lib/R/library/mgcv/html/predict.gam.html lib/R/library/mgcv/html/print.gam.html lib/R/library/mgcv/html/residuals.gam.html lib/R/library/mgcv/html/s.html lib/R/library/mgcv/html/summary.gam.html -lib/R/library/mgcv/html/theta.maxl.html lib/R/library/mgcv/html/uniquecombs.html +lib/R/library/mgcv/html/vis.gam.html lib/R/library/mgcv/latex/GAMsetup.tex lib/R/library/mgcv/latex/QT.tex +lib/R/library/mgcv/latex/exclude.too.far.tex +lib/R/library/mgcv/latex/full.score.tex lib/R/library/mgcv/latex/gam.check.tex lib/R/library/mgcv/latex/gam.control.tex lib/R/library/mgcv/latex/gam.fit.tex lib/R/library/mgcv/latex/gam.models.tex -lib/R/library/mgcv/latex/gam.nbut.tex +lib/R/library/mgcv/latex/gam.neg.bin.tex lib/R/library/mgcv/latex/gam.parser.tex lib/R/library/mgcv/latex/gam.selection.tex lib/R/library/mgcv/latex/gam.setup.tex lib/R/library/mgcv/latex/gam.side.conditions.tex lib/R/library/mgcv/latex/gam.tex -lib/R/library/mgcv/latex/get.family.tex +lib/R/library/mgcv/latex/magic.post.proc.tex +lib/R/library/mgcv/latex/magic.tex lib/R/library/mgcv/latex/mgcv.tex lib/R/library/mgcv/latex/mono.con.tex -lib/R/library/mgcv/latex/neg.binom.tex +lib/R/library/mgcv/latex/mroot.tex lib/R/library/mgcv/latex/null.space.dimension.tex lib/R/library/mgcv/latex/pcls.tex -lib/R/library/mgcv/latex/persp.gam.tex lib/R/library/mgcv/latex/plot.gam.tex lib/R/library/mgcv/latex/predict.gam.tex lib/R/library/mgcv/latex/print.gam.tex lib/R/library/mgcv/latex/residuals.gam.tex lib/R/library/mgcv/latex/s.tex lib/R/library/mgcv/latex/summary.gam.tex -lib/R/library/mgcv/latex/theta.maxl.tex lib/R/library/mgcv/latex/uniquecombs.tex +lib/R/library/mgcv/latex/vis.gam.tex lib/R/library/mgcv/libs/mgcv.so lib/R/library/mgcv/man/mgcv.Rd +lib/R/library/mle/CONTENTS +lib/R/library/mle/DESCRIPTION +lib/R/library/mle/INDEX +lib/R/library/mle/Meta/Rd.rds +lib/R/library/mle/Meta/hsearch.rds +lib/R/library/mle/NAMESPACE +lib/R/library/mle/R-ex/mle.R +lib/R/library/mle/R-ex/summary.mle-class.R +lib/R/library/mle/R/all.rda +lib/R/library/mle/R/mle +lib/R/library/mle/help/AnIndex +lib/R/library/mle/help/confint-methods +lib/R/library/mle/help/mle +lib/R/library/mle/help/mle-class +lib/R/library/mle/help/plot-methods +lib/R/library/mle/help/profile-methods +lib/R/library/mle/help/profile.mle-class +lib/R/library/mle/help/show-methods +lib/R/library/mle/help/summary-methods +lib/R/library/mle/help/summary.mle-class +lib/R/library/mle/html/00Index.html +lib/R/library/mle/html/confint-methods.html +lib/R/library/mle/html/mle-class.html +lib/R/library/mle/html/mle.html +lib/R/library/mle/html/plot-methods.html +lib/R/library/mle/html/profile-methods.html +lib/R/library/mle/html/profile.mle-class.html +lib/R/library/mle/html/show-methods.html +lib/R/library/mle/html/summary-methods.html +lib/R/library/mle/html/summary.mle-class.html +lib/R/library/mle/latex/confint-methods.tex +lib/R/library/mle/latex/mle-class.tex +lib/R/library/mle/latex/mle.tex +lib/R/library/mle/latex/plot-methods.tex +lib/R/library/mle/latex/profile-methods.tex +lib/R/library/mle/latex/profile.mle-class.tex +lib/R/library/mle/latex/show-methods.tex +lib/R/library/mle/latex/summary-methods.tex +lib/R/library/mle/latex/summary.mle-class.tex +lib/R/library/mle/man/mle.Rd lib/R/library/modreg/CONTENTS lib/R/library/modreg/COPYRIGHTS lib/R/library/modreg/DESCRIPTION lib/R/library/modreg/INDEX lib/R/library/modreg/Meta/Rd.rds lib/R/library/modreg/Meta/data.rds +lib/R/library/modreg/Meta/hsearch.rds lib/R/library/modreg/NAMESPACE lib/R/library/modreg/R-ex/isoreg.R lib/R/library/modreg/R-ex/ksmooth.R @@ -5158,6 +5257,7 @@ lib/R/library/mva/DESCRIPTION lib/R/library/mva/INDEX lib/R/library/mva/Meta/Rd.rds lib/R/library/mva/Meta/data.rds +lib/R/library/mva/Meta/hsearch.rds lib/R/library/mva/NAMESPACE lib/R/library/mva/R-ex/Harman23.cor.R lib/R/library/mva/R-ex/Harman74.cor.R @@ -5275,6 +5375,7 @@ lib/R/library/nlme/DESCRIPTION lib/R/library/nlme/INDEX lib/R/library/nlme/Meta/Rd.rds lib/R/library/nlme/Meta/data.rds +lib/R/library/nlme/Meta/hsearch.rds lib/R/library/nlme/NAMESPACE lib/R/library/nlme/R-ex/ACF.R lib/R/library/nlme/R-ex/ACF.gls.R @@ -5533,7 +5634,6 @@ lib/R/library/nlme/R-ex/varIdent.R lib/R/library/nlme/R-ex/varPower.R lib/R/library/nlme/R-ex/varWeights.R lib/R/library/nlme/R/nlme -lib/R/library/nlme/data/00Index lib/R/library/nlme/data/Alfalfa.rda lib/R/library/nlme/data/Assay.rda lib/R/library/nlme/data/BodyWeight.rda @@ -6456,6 +6556,7 @@ lib/R/library/nls/DESCRIPTION lib/R/library/nls/INDEX lib/R/library/nls/Meta/Rd.rds lib/R/library/nls/Meta/data.rds +lib/R/library/nls/Meta/hsearch.rds lib/R/library/nls/NAMESPACE lib/R/library/nls/R-ex/BOD.R lib/R/library/nls/R-ex/CO2.R @@ -6494,8 +6595,6 @@ lib/R/library/nls/R-ex/profile.nls.R lib/R/library/nls/R-ex/profiler.R lib/R/library/nls/R-ex/profiler.nls.R lib/R/library/nls/R-ex/selfStart.R -lib/R/library/nls/R-ex/selfStart.default.R -lib/R/library/nls/R-ex/selfStart.formula.R lib/R/library/nls/R-ex/setNames.R lib/R/library/nls/R-ex/sortedXyData.R lib/R/library/nls/R/nls @@ -6546,8 +6645,6 @@ lib/R/library/nls/help/profile.nls lib/R/library/nls/help/profiler lib/R/library/nls/help/profiler.nls lib/R/library/nls/help/selfStart -lib/R/library/nls/help/selfStart.default -lib/R/library/nls/help/selfStart.formula lib/R/library/nls/help/setNames lib/R/library/nls/help/sortedXyData lib/R/library/nls/html/00Index.html @@ -6587,8 +6684,6 @@ lib/R/library/nls/html/predict.nls.html lib/R/library/nls/html/profile.nls.html lib/R/library/nls/html/profiler.html lib/R/library/nls/html/profiler.nls.html -lib/R/library/nls/html/selfStart.default.html -lib/R/library/nls/html/selfStart.formula.html lib/R/library/nls/html/selfStart.html lib/R/library/nls/html/setNames.html lib/R/library/nls/html/sortedXyData.html @@ -6628,8 +6723,6 @@ lib/R/library/nls/latex/predict.nls.tex lib/R/library/nls/latex/profile.nls.tex lib/R/library/nls/latex/profiler.nls.tex lib/R/library/nls/latex/profiler.tex -lib/R/library/nls/latex/selfStart.default.tex -lib/R/library/nls/latex/selfStart.formula.tex lib/R/library/nls/latex/selfStart.tex lib/R/library/nls/latex/setNames.tex lib/R/library/nls/latex/sortedXyData.tex @@ -6640,6 +6733,7 @@ lib/R/library/nnet/DESCRIPTION lib/R/library/nnet/INDEX lib/R/library/nnet/LICENCE lib/R/library/nnet/Meta/Rd.rds +lib/R/library/nnet/Meta/hsearch.rds lib/R/library/nnet/NAMESPACE lib/R/library/nnet/R-ex/class.ind.R lib/R/library/nnet/R-ex/multinom.R @@ -6675,6 +6769,7 @@ lib/R/library/rpart/DESCRIPTION lib/R/library/rpart/INDEX lib/R/library/rpart/Meta/Rd.rds lib/R/library/rpart/Meta/data.rds +lib/R/library/rpart/Meta/hsearch.rds lib/R/library/rpart/NAMESPACE lib/R/library/rpart/R-ex/car.test.frame.R lib/R/library/rpart/R-ex/cu.summary.R @@ -6696,7 +6791,6 @@ lib/R/library/rpart/R-ex/summary.rpart.R lib/R/library/rpart/R-ex/text.rpart.R lib/R/library/rpart/R-ex/xpred.rpart.R lib/R/library/rpart/R/rpart -lib/R/library/rpart/data/00Index lib/R/library/rpart/data/car.test.frame.csv lib/R/library/rpart/data/cu.summary.rda lib/R/library/rpart/data/kyphosis.tab @@ -6718,13 +6812,9 @@ lib/R/library/rpart/help/printcp lib/R/library/rpart/help/prune.rpart lib/R/library/rpart/help/residuals.rpart lib/R/library/rpart/help/rpart -lib/R/library/rpart/help/rpart.anova -lib/R/library/rpart/help/rpart.class +lib/R/library/rpart/help/rpart-internal lib/R/library/rpart/help/rpart.control -lib/R/library/rpart/help/rpart.exp -lib/R/library/rpart/help/rpart.matrix lib/R/library/rpart/help/rpart.object -lib/R/library/rpart/help/rpart.poisson lib/R/library/rpart/help/rpconvert lib/R/library/rpart/help/rsq.rpart lib/R/library/rpart/help/snip.rpart @@ -6748,14 +6838,10 @@ lib/R/library/rpart/html/print.rpart.html lib/R/library/rpart/html/printcp.html lib/R/library/rpart/html/prune.rpart.html lib/R/library/rpart/html/residuals.rpart.html -lib/R/library/rpart/html/rpart.anova.html -lib/R/library/rpart/html/rpart.class.html +lib/R/library/rpart/html/rpart-internal.html lib/R/library/rpart/html/rpart.control.html -lib/R/library/rpart/html/rpart.exp.html lib/R/library/rpart/html/rpart.html -lib/R/library/rpart/html/rpart.matrix.html lib/R/library/rpart/html/rpart.object.html -lib/R/library/rpart/html/rpart.poisson.html lib/R/library/rpart/html/rpconvert.html lib/R/library/rpart/html/rsq.rpart.html lib/R/library/rpart/html/snip.rpart.html @@ -6778,13 +6864,9 @@ lib/R/library/rpart/latex/print.rpart.tex lib/R/library/rpart/latex/printcp.tex lib/R/library/rpart/latex/prune.rpart.tex lib/R/library/rpart/latex/residuals.rpart.tex -lib/R/library/rpart/latex/rpart.anova.tex -lib/R/library/rpart/latex/rpart.class.tex +lib/R/library/rpart/latex/rpart-internal.tex lib/R/library/rpart/latex/rpart.control.tex -lib/R/library/rpart/latex/rpart.exp.tex -lib/R/library/rpart/latex/rpart.matrix.tex lib/R/library/rpart/latex/rpart.object.tex -lib/R/library/rpart/latex/rpart.poisson.tex lib/R/library/rpart/latex/rpart.tex lib/R/library/rpart/latex/rpconvert.tex lib/R/library/rpart/latex/rsq.rpart.tex @@ -6800,6 +6882,7 @@ lib/R/library/spatial/DESCRIPTION lib/R/library/spatial/INDEX lib/R/library/spatial/LICENCE lib/R/library/spatial/Meta/Rd.rds +lib/R/library/spatial/Meta/hsearch.rds lib/R/library/spatial/NAMESPACE lib/R/library/spatial/PP.files lib/R/library/spatial/R-ex/Kaver.R @@ -6917,6 +7000,7 @@ lib/R/library/splines/CONTENTS lib/R/library/splines/DESCRIPTION lib/R/library/splines/INDEX lib/R/library/splines/Meta/Rd.rds +lib/R/library/splines/Meta/hsearch.rds lib/R/library/splines/NAMESPACE lib/R/library/splines/R-ex/asVector.R lib/R/library/splines/R-ex/backSpline.R @@ -6979,6 +7063,7 @@ lib/R/library/stepfun/CONTENTS lib/R/library/stepfun/DESCRIPTION lib/R/library/stepfun/INDEX lib/R/library/stepfun/Meta/Rd.rds +lib/R/library/stepfun/Meta/hsearch.rds lib/R/library/stepfun/NAMESPACE lib/R/library/stepfun/R-ex/ecdf.R lib/R/library/stepfun/R-ex/plot.stepfun.R @@ -7002,6 +7087,7 @@ lib/R/library/survival/DESCRIPTION lib/R/library/survival/INDEX lib/R/library/survival/Meta/Rd.rds lib/R/library/survival/Meta/data.rds +lib/R/library/survival/Meta/hsearch.rds lib/R/library/survival/R-ex/Surv.R lib/R/library/survival/R-ex/anova.coxph.R lib/R/library/survival/R-ex/as.date.R @@ -7043,6 +7129,7 @@ lib/R/library/survival/R-ex/survreg.control.R lib/R/library/survival/R-ex/survreg.distributions.R lib/R/library/survival/R-ex/survreg.old.R lib/R/library/survival/R-ex/tcut.R +lib/R/library/survival/R-ex/tobin.R lib/R/library/survival/R-ex/untangle.specials.R lib/R/library/survival/R/survival lib/R/library/survival/data/aml.rda @@ -7058,6 +7145,7 @@ lib/R/library/survival/data/pbc.rda lib/R/library/survival/data/ratetables.rda lib/R/library/survival/data/rats.rda lib/R/library/survival/data/stanford2.rda +lib/R/library/survival/data/tobin.txt lib/R/library/survival/data/veteran.rda lib/R/library/survival/help/AnIndex lib/R/library/survival/help/Surv @@ -7117,6 +7205,7 @@ lib/R/library/survival/help/survreg.distributions lib/R/library/survival/help/survreg.object lib/R/library/survival/help/survreg.old lib/R/library/survival/help/tcut +lib/R/library/survival/help/tobin lib/R/library/survival/help/untangle.specials lib/R/library/survival/help/veteran lib/R/library/survival/html/00Index.html @@ -7177,6 +7266,7 @@ lib/R/library/survival/html/survreg.html lib/R/library/survival/html/survreg.object.html lib/R/library/survival/html/survreg.old.html lib/R/library/survival/html/tcut.html +lib/R/library/survival/html/tobin.html lib/R/library/survival/html/untangle.specials.html lib/R/library/survival/html/veteran.html lib/R/library/survival/latex/Surv.tex @@ -7236,6 +7326,7 @@ lib/R/library/survival/latex/survreg.object.tex lib/R/library/survival/latex/survreg.old.tex lib/R/library/survival/latex/survreg.tex lib/R/library/survival/latex/tcut.tex +lib/R/library/survival/latex/tobin.tex lib/R/library/survival/latex/untangle.specials.tex lib/R/library/survival/latex/veteran.tex lib/R/library/survival/libs/survival.so @@ -7246,11 +7337,12 @@ lib/R/library/tcltk/DESCRIPTION lib/R/library/tcltk/INDEX lib/R/library/tcltk/Meta/Rd.rds lib/R/library/tcltk/Meta/demo.rds +lib/R/library/tcltk/Meta/hsearch.rds +lib/R/library/tcltk/NAMESPACE lib/R/library/tcltk/R-ex/TclInterface.R lib/R/library/tcltk/R-ex/TkCommands.R lib/R/library/tcltk/R-ex/TkWidgetcmds.R lib/R/library/tcltk/R-ex/TkWidgets.R -lib/R/library/tcltk/R-ex/tkpager.R lib/R/library/tcltk/R/tcltk lib/R/library/tcltk/demo/00Index lib/R/library/tcltk/demo/tkcanvas.R @@ -7295,10 +7387,13 @@ lib/R/library/tools/CONTENTS lib/R/library/tools/DESCRIPTION lib/R/library/tools/INDEX lib/R/library/tools/Meta/Rd.rds +lib/R/library/tools/Meta/hsearch.rds lib/R/library/tools/NAMESPACE lib/R/library/tools/R-ex/Sweave.R lib/R/library/tools/R-ex/SweaveSyntConv.R lib/R/library/tools/R-ex/checkFF.R +lib/R/library/tools/R-ex/delimMatch.R +lib/R/library/tools/R-ex/fileutils.R lib/R/library/tools/R-ex/md5sum.R lib/R/library/tools/R-ex/undoc.R lib/R/library/tools/R/tools @@ -7315,6 +7410,8 @@ lib/R/library/tools/help/checkMD5sums lib/R/library/tools/help/checkTnF lib/R/library/tools/help/checkVignettes lib/R/library/tools/help/codoc +lib/R/library/tools/help/delimMatch +lib/R/library/tools/help/fileutils lib/R/library/tools/help/md5sum lib/R/library/tools/help/tools-internal lib/R/library/tools/help/undoc @@ -7330,6 +7427,8 @@ lib/R/library/tools/html/checkMD5sums.html lib/R/library/tools/html/checkTnF.html lib/R/library/tools/html/checkVignettes.html lib/R/library/tools/html/codoc.html +lib/R/library/tools/html/delimMatch.html +lib/R/library/tools/html/fileutils.html lib/R/library/tools/html/md5sum.html lib/R/library/tools/html/tools-internal.html lib/R/library/tools/html/undoc.html @@ -7344,6 +7443,8 @@ lib/R/library/tools/latex/checkMD5sums.tex lib/R/library/tools/latex/checkTnF.tex lib/R/library/tools/latex/checkVignettes.tex lib/R/library/tools/latex/codoc.tex +lib/R/library/tools/latex/delimMatch.tex +lib/R/library/tools/latex/fileutils.tex lib/R/library/tools/latex/md5sum.tex lib/R/library/tools/latex/tools-internal.tex lib/R/library/tools/latex/undoc.tex @@ -7354,6 +7455,7 @@ lib/R/library/ts/DESCRIPTION lib/R/library/ts/INDEX lib/R/library/ts/Meta/Rd.rds lib/R/library/ts/Meta/data.rds +lib/R/library/ts/Meta/hsearch.rds lib/R/library/ts/NAMESPACE lib/R/library/ts/R-ex/ARMAacf.R lib/R/library/ts/R-ex/ARMAtoMA.R @@ -7610,9 +7712,11 @@ lib/R/modules/internet.so lib/R/modules/lapack.so lib/R/modules/vfonts.so lib/R/share/R/firstlib.R +lib/R/share/R/nsrdaload.R lib/R/share/make/config.mk lib/R/share/make/shlib.mk lib/R/share/make/tests.mk +lib/R/share/make/vars.mk lib/R/share/perl/R/Dcf.pm lib/R/share/perl/R/Logfile.pm lib/R/share/perl/R/Rd.pm @@ -7623,7 +7727,6 @@ lib/R/share/perl/R/Utils.pm lib/R/share/perl/R/Vars.pm lib/R/share/perl/Rd2contents.pl lib/R/share/perl/Text/DelimMatch.pm -lib/R/share/perl/build-help-mac.pl lib/R/share/perl/build-help-windows.pl lib/R/share/perl/build-help.pl lib/R/share/perl/extract-examples.pl @@ -7642,6 +7745,7 @@ lib/R/share/texmf/hyperref.cfg lib/R/share/texmf/omsaer.fd lib/R/share/texmf/omsaett.fd lib/R/share/texmf/omscmtt.fd +lib/R/share/texmf/upquote.sty @dirrm lib/R/share/texmf @dirrm lib/R/share/sh @dirrm lib/R/share/perl/Text @@ -7780,6 +7884,14 @@ lib/R/share/texmf/omscmtt.fd @dirrm lib/R/library/modreg/R @dirrm lib/R/library/modreg/Meta @dirrm lib/R/library/modreg +@dirrm lib/R/library/mle/man +@dirrm lib/R/library/mle/latex +@dirrm lib/R/library/mle/html +@dirrm lib/R/library/mle/help +@dirrm lib/R/library/mle/R-ex +@dirrm lib/R/library/mle/R +@dirrm lib/R/library/mle/Meta +@dirrm lib/R/library/mle @dirrm lib/R/library/mgcv/man @dirrm lib/R/library/mgcv/libs @dirrm lib/R/library/mgcv/latex diff --git a/math/R-project/Makefile b/math/R-project/Makefile index 139ca8ab6a54..d04f5ca17422 100644 --- a/math/R-project/Makefile +++ b/math/R-project/Makefile @@ -1,3 +1,4 @@ +# ex: ts=8 sts=0 noet # New ports collection makefile for: R (letter) # Date created: Fri Feb 9 10:50:25 EST 2001 # Whom: Maurice Castro @@ -6,56 +7,77 @@ # PORTNAME= R -PORTVERSION= 1.7.1 +PORTVERSION= 1.8.0 CATEGORIES= math MASTER_SITES= http://cran.r-project.org/src/base/ \ ftp://cran.r-project.org/pub/R/src/base/ \ http://cran.at.r-project.org/src/base/ \ http://cran.au.r-project.org/src/base/ \ + http://cran.br.r-project.org/src/base/ \ http://cran.ch.r-project.org/src/base/ \ + http://cran.es.r-project.org/src/base/ \ http://cran.dk.r-project.org/src/base/ \ http://cran.hu.r-project.org/src/base/ \ http://cran.uk.r-project.org/src/base/ \ http://cran.us.r-project.org/src/base/ \ + http://cran.za.r-project.org/src/base/ \ ftp://ftp.u-aizu.ac.jp/pub/lang/R/CRAN/src/base/ \ - http://lib.stat.cmu.edu/R/CRAN/src/base/ + http://lib.stat.cmu.edu/R/CRAN/src/base/ \ + http://cran.stat.ucla.edu/src/base/ \ + http://probability.ca/cran/src/base/ \ + http://www.ibiblio.org/pub/languages/R/CRAN/src/base/ \ + http://www.bioconductor.org/CRAN/src/base/ PKGNAMESUFFIX= -${PAPERSIZE} EXTRACT_SUFX= .tgz MAINTAINER= vangyzen@stat.duke.edu COMMENT= A language for statistical computing and graphics +CONFLICTS?= R-a4-* + LIB_DEPENDS= tcl84:${PORTSDIR}/lang/tcl84 \ tk84:${PORTSDIR}/x11-toolkits/tk84 \ jpeg.9:${PORTSDIR}/graphics/jpeg \ png.5:${PORTSDIR}/graphics/png \ - pcre.0:${PORTSDIR}/devel/pcre \ - lapack.3:${PORTSDIR}/math/lapack + pcre.0:${PORTSDIR}/devel/pcre + +.if defined(WITH_ATLAS) +LIB_DEPENDS+= f77blas.1:${PORTSDIR}/math/atlas +CONFIGURE_ARGS= --with-lapack="-lalapack -lcblas" --with-blas="-lf77blas" +.else +LIB_DEPENDS+= lapack.3:${PORTSDIR}/math/lapack +CONFIGURE_ARGS= --with-lapack="-llapack" --with-blas="-lblas" +.endif GNU_CONFIGURE= yes USE_XLIB= yes USE_PERL5= yes -CONFIGURE_ENV= R_PAPERSIZE=${PAPERSIZE} \ +CONFIGURE_ENV= R_PAPERSIZE=${PAPERSIZE} FFLAGS="${FFLAGS}" \ INSTALL_DATA="${INSTALL} ${COPY} ${_SHROWNGRP} -m 644" -CONFIGURE_ARGS= --with-lapack +CONFIGURE_ARGS+=--enable-R-shlib PAPERSIZE?= letter .if ${PAPERSIZE} != letter && ${PAPERSIZE} != a4 .BEGIN: @${ECHO} "Invalid value for PAPERSIZE: \"${PAPERSIZE}\"" - @${ECHO} "Possible values are: a4 and letter." + @${ECHO} "Possible values are: a4 letter" @${FALSE} .endif MAN1= R.1 +test check: build + @(cd ${WRKSRC}; ${MAKE} check) +check-all: build + @(cd ${WRKSRC}; ${MAKE} check-all) + .include -#.if ${OSVERSION} >= 500113 -#BROKEN= "Does not compile" -#.endif - -test check: build - @(cd ${WRKSRC}; make check) +# Work around a gcc-3.3.1 internal compiler error on 5.1-CURRENT. +.if ${OSVERSION} >= 501103 +pre-build: + @(cd ${WRKSRC}/src/include; ${MAKE} Rmath.h) + @(cd ${WRKSRC}/src/main; ${MAKE} CFLAGS+=-O0 plotmath.o) +.endif .include diff --git a/math/R-project/distinfo b/math/R-project/distinfo index a438e43ae205..82b13acda835 100644 --- a/math/R-project/distinfo +++ b/math/R-project/distinfo @@ -1 +1 @@ -MD5 (R-1.7.1.tgz) = 833c2a9a62818211f2f9f0353ecd9bbd +MD5 (R-1.8.0.tgz) = bb019d7e12e38ac8a8bc247f06cc6b42 diff --git a/math/R-project/pkg-descr b/math/R-project/pkg-descr index bac2f88956c4..a5394140f21e 100644 --- a/math/R-project/pkg-descr +++ b/math/R-project/pkg-descr @@ -1,20 +1,22 @@ -R is a language and environment for statistical computing and graphics. -It is a GNU project which is similar to the S language and environment -which was developed at Bell Laboratories (formerly AT&T, now Lucent -Technologies) by John Chambers and colleagues. R can be considered as a -different implementation of S. There are some important differences, -but much code written for S runs unaltered under R. +From : -R provides a wide variety of statistical (linear and nonlinear modelling, -classical statistical tests, time-series analysis, classification, -clustering, ...) and graphical techniques, and is highly extensible. -The S language is often the vehicle of choice for research in statistical -methodology, and R provides an Open Source route to participation in that -activity. + R is a language and environment for statistical computing and graphics. + It is a GNU project which is similar to the S language and environment + which was developed at Bell Laboratories (formerly AT&T, now Lucent + Technologies) by John Chambers and colleagues. R can be considered as a + different implementation of S. There are some important differences, + but much code written for S runs unaltered under R. -One of R's strengths is the ease with which well-designed publication-quality -plots can be produced, including mathematical symbols and formulae where -needed. Great care has been taken over the defaults for the minor design -choices in graphics, but the user retains full control. + R provides a wide variety of statistical (linear and nonlinear modelling, + classical statistical tests, time-series analysis, classification, + clustering, ...) and graphical techniques, and is highly extensible. + The S language is often the vehicle of choice for research in statistical + methodology, and R provides an Open Source route to participation in that + activity. + + One of R's strengths is the ease with which well-designed + publication-quality plots can be produced, including mathematical symbols + and formulae where needed. Great care has been taken over the defaults for + the minor design choices in graphics, but the user retains full control. WWW: http://www.R-project.org/ diff --git a/math/R-project/pkg-plist b/math/R-project/pkg-plist index fff84538a265..2e21f0209219 100644 --- a/math/R-project/pkg-plist +++ b/math/R-project/pkg-plist @@ -98,7 +98,6 @@ lib/R/bin/Rd2dvi lib/R/bin/Rd2txt lib/R/bin/Rdconv lib/R/bin/Rdiff -lib/R/bin/Rdindex lib/R/bin/Rprof lib/R/bin/SHLIB lib/R/bin/Sd2Rd @@ -106,7 +105,9 @@ lib/R/bin/build lib/R/bin/check lib/R/bin/config lib/R/bin/f77 +lib/R/bin/libR.so lib/R/bin/libtool +lib/R/bin/mkinstalldirs lib/R/bin/pager lib/R/bin/texi2dvi lib/R/doc/KEYWORDS @@ -160,8 +161,8 @@ lib/R/include/R_ext/GraphicsDevice.h lib/R/include/R_ext/GraphicsEngine.h lib/R/include/R_ext/Lapack.h lib/R/include/R_ext/Linpack.h -lib/R/include/R_ext/Mathlib.h lib/R/include/R_ext/Memory.h +lib/R/include/R_ext/Parse.h lib/R/include/R_ext/Print.h lib/R/include/R_ext/PrtUtil.h lib/R/include/R_ext/R-ftp-http.h @@ -184,6 +185,7 @@ lib/R/library/KernSmooth/CONTENTS lib/R/library/KernSmooth/DESCRIPTION lib/R/library/KernSmooth/INDEX lib/R/library/KernSmooth/Meta/Rd.rds +lib/R/library/KernSmooth/Meta/hsearch.rds lib/R/library/KernSmooth/NAMESPACE lib/R/library/KernSmooth/R-ex/bkde.R lib/R/library/KernSmooth/R-ex/bkde2D.R @@ -224,6 +226,7 @@ lib/R/library/MASS/INDEX lib/R/library/MASS/LICENCE lib/R/library/MASS/Meta/Rd.rds lib/R/library/MASS/Meta/data.rds +lib/R/library/MASS/Meta/hsearch.rds lib/R/library/MASS/NAMESPACE lib/R/library/MASS/R-ex/Insurance.R lib/R/library/MASS/R-ex/Null.R @@ -460,7 +463,6 @@ lib/R/library/MASS/help/eagles lib/R/library/MASS/help/epil lib/R/library/MASS/help/eqscplot lib/R/library/MASS/help/farms -lib/R/library/MASS/help/fdeaths lib/R/library/MASS/help/fgl lib/R/library/MASS/help/fitdistr lib/R/library/MASS/help/forbes @@ -496,7 +498,6 @@ lib/R/library/MASS/help/logtrans lib/R/library/MASS/help/mammals lib/R/library/MASS/help/mca lib/R/library/MASS/help/mcycle -lib/R/library/MASS/help/mdeaths lib/R/library/MASS/help/menarche lib/R/library/MASS/help/michelson lib/R/library/MASS/help/minn38 @@ -619,7 +620,6 @@ lib/R/library/MASS/html/eagles.html lib/R/library/MASS/html/epil.html lib/R/library/MASS/html/eqscplot.html lib/R/library/MASS/html/farms.html -lib/R/library/MASS/html/fdeaths.html lib/R/library/MASS/html/fgl.html lib/R/library/MASS/html/fitdistr.html lib/R/library/MASS/html/forbes.html @@ -655,7 +655,6 @@ lib/R/library/MASS/html/logtrans.html lib/R/library/MASS/html/mammals.html lib/R/library/MASS/html/mca.html lib/R/library/MASS/html/mcycle.html -lib/R/library/MASS/html/mdeaths.html lib/R/library/MASS/html/menarche.html lib/R/library/MASS/html/michelson.html lib/R/library/MASS/html/minn38.html @@ -777,7 +776,6 @@ lib/R/library/MASS/latex/eagles.tex lib/R/library/MASS/latex/epil.tex lib/R/library/MASS/latex/eqscplot.tex lib/R/library/MASS/latex/farms.tex -lib/R/library/MASS/latex/fdeaths.tex lib/R/library/MASS/latex/fgl.tex lib/R/library/MASS/latex/fitdistr.tex lib/R/library/MASS/latex/forbes.tex @@ -813,7 +811,6 @@ lib/R/library/MASS/latex/logtrans.tex lib/R/library/MASS/latex/mammals.tex lib/R/library/MASS/latex/mca.tex lib/R/library/MASS/latex/mcycle.tex -lib/R/library/MASS/latex/mdeaths.tex lib/R/library/MASS/latex/menarche.tex lib/R/library/MASS/latex/michelson.tex lib/R/library/MASS/latex/minn38.tex @@ -915,6 +912,7 @@ lib/R/library/base/INDEX lib/R/library/base/Meta/Rd.rds lib/R/library/base/Meta/data.rds lib/R/library/base/Meta/demo.rds +lib/R/library/base/Meta/hsearch.rds lib/R/library/base/R-ex/AIC.R lib/R/library/base/R-ex/Arithmetic.R lib/R/library/base/R-ex/Bessel.R @@ -929,6 +927,8 @@ lib/R/library/base/R-ex/DateTimeClasses.R lib/R/library/base/R-ex/Devices.R lib/R/library/base/R-ex/Exponential.R lib/R/library/base/R-ex/Extract.R +lib/R/library/base/R-ex/Extract.data.frame.R +lib/R/library/base/R-ex/Extract.factor.R lib/R/library/base/R-ex/Extremes.R lib/R/library/base/R-ex/FDist.R lib/R/library/base/R-ex/Formaldehyde.R @@ -1032,8 +1032,8 @@ lib/R/library/base/R-ex/birthday.R lib/R/library/base/R-ex/body.R lib/R/library/base/R-ex/box.R lib/R/library/base/R-ex/boxplot.R -lib/R/library/base/R-ex/boxplot.formula.R lib/R/library/base/R-ex/boxplot.stats.R +lib/R/library/base/R-ex/bquote.R lib/R/library/base/R-ex/browseEnv.R lib/R/library/base/R-ex/bxp.R lib/R/library/base/R-ex/by.R @@ -1067,6 +1067,7 @@ lib/R/library/base/R-ex/commandArgs.R lib/R/library/base/R-ex/comment.R lib/R/library/base/R-ex/complete.cases.R lib/R/library/base/R-ex/complex.R +lib/R/library/base/R-ex/conditions.R lib/R/library/base/R-ex/confint.R lib/R/library/base/R-ex/conflicts.R lib/R/library/base/R-ex/connections.R @@ -1169,7 +1170,6 @@ lib/R/library/base/R-ex/getwd.R lib/R/library/base/R-ex/gl.R lib/R/library/base/R-ex/glm.R lib/R/library/base/R-ex/glm.control.R -lib/R/library/base/R-ex/glm.summary.R lib/R/library/base/R-ex/gnome.R lib/R/library/base/R-ex/gray.R lib/R/library/base/R-ex/grep.R @@ -1208,7 +1208,7 @@ lib/R/library/base/R-ex/lapply.R lib/R/library/base/R-ex/layout.R lib/R/library/base/R-ex/legend.R lib/R/library/base/R-ex/length.R -lib/R/library/base/R-ex/levels.factor.R +lib/R/library/base/R-ex/levels.R lib/R/library/base/R-ex/library.R lib/R/library/base/R-ex/library.dynam.R lib/R/library/base/R-ex/lines.R @@ -1217,7 +1217,6 @@ lib/R/library/base/R-ex/list.files.R lib/R/library/base/R-ex/lm.R lib/R/library/base/R-ex/lm.influence.R lib/R/library/base/R-ex/lm.summaries.R -lib/R/library/base/R-ex/lm.summary.R lib/R/library/base/R-ex/lmfit.R lib/R/library/base/R-ex/load.R lib/R/library/base/R-ex/localeconv.R @@ -1236,7 +1235,9 @@ lib/R/library/base/R-ex/mahalanobis.R lib/R/library/base/R-ex/make.link.R lib/R/library/base/R-ex/make.names.R lib/R/library/base/R-ex/make.socket.R +lib/R/library/base/R-ex/make.unique.R lib/R/library/base/R-ex/makepredictcall.R +lib/R/library/base/R-ex/manglePackageName.R lib/R/library/base/R-ex/mapply.R lib/R/library/base/R-ex/margin.table.R lib/R/library/base/R-ex/mat.or.vec.R @@ -1295,7 +1296,6 @@ lib/R/library/base/R-ex/package.contents.R lib/R/library/base/R-ex/package.skeleton.R lib/R/library/base/R-ex/packageStatus.R lib/R/library/base/R-ex/pairs.R -lib/R/library/base/R-ex/pairs.formula.R lib/R/library/base/R-ex/palette.R lib/R/library/base/R-ex/palettes.R lib/R/library/base/R-ex/panel.smooth.R @@ -1309,6 +1309,7 @@ lib/R/library/base/R-ex/phones.R lib/R/library/base/R-ex/pictex.R lib/R/library/base/R-ex/pie.R lib/R/library/base/R-ex/plot.R +lib/R/library/base/R-ex/plot.dataframe.R lib/R/library/base/R-ex/plot.design.R lib/R/library/base/R-ex/plot.lm.R lib/R/library/base/R-ex/plot.table.R @@ -1381,6 +1382,7 @@ lib/R/library/base/R-ex/round.POSIXt.R lib/R/library/base/R-ex/row.R lib/R/library/base/R-ex/rowsum.R lib/R/library/base/R-ex/rug.R +lib/R/library/base/R-ex/sQuote.R lib/R/library/base/R-ex/sample.R lib/R/library/base/R-ex/save.R lib/R/library/base/R-ex/savehistory.R @@ -1394,12 +1396,14 @@ lib/R/library/base/R-ex/segments.R lib/R/library/base/R-ex/seq.POSIXt.R lib/R/library/base/R-ex/seq.R lib/R/library/base/R-ex/sequence.R +lib/R/library/base/R-ex/serialize.R lib/R/library/base/R-ex/sets.R lib/R/library/base/R-ex/showConnections.R lib/R/library/base/R-ex/sign.R lib/R/library/base/R-ex/sink.R lib/R/library/base/R-ex/sleep.R lib/R/library/base/R-ex/slice.index.R +lib/R/library/base/R-ex/socketSelect.R lib/R/library/base/R-ex/solve.R lib/R/library/base/R-ex/sort.R lib/R/library/base/R-ex/splinefun.R @@ -1425,6 +1429,8 @@ lib/R/library/base/R-ex/substitute.R lib/R/library/base/R-ex/substr.R lib/R/library/base/R-ex/summary.R lib/R/library/base/R-ex/summary.aov.R +lib/R/library/base/R-ex/summary.glm.R +lib/R/library/base/R-ex/summary.lm.R lib/R/library/base/R-ex/summary.manova.R lib/R/library/base/R-ex/summaryRprof.R lib/R/library/base/R-ex/sunflowerplot.R @@ -1471,6 +1477,7 @@ lib/R/library/base/R-ex/update.packages.R lib/R/library/base/R-ex/url.show.R lib/R/library/base/R-ex/uspop.R lib/R/library/base/R-ex/vector.R +lib/R/library/base/R-ex/vignette.R lib/R/library/base/R-ex/volcano.R lib/R/library/base/R-ex/warning.R lib/R/library/base/R-ex/warnings.R @@ -1559,7 +1566,6 @@ lib/R/library/base/demo/plotmath.R lib/R/library/base/demo/recursion.R lib/R/library/base/demo/scoping.R lib/R/library/base/help/AIC -lib/R/library/base/help/AIC.logLik lib/R/library/base/help/AnIndex lib/R/library/base/help/Arithmetic lib/R/library/base/help/AsIs @@ -1579,6 +1585,8 @@ lib/R/library/base/help/Deprecated lib/R/library/base/help/Devices lib/R/library/base/help/Exponential lib/R/library/base/help/Extract +lib/R/library/base/help/Extract.data.frame +lib/R/library/base/help/Extract.factor lib/R/library/base/help/Extremes lib/R/library/base/help/FDist lib/R/library/base/help/Foreign @@ -1644,6 +1652,7 @@ lib/R/library/base/help/USArrests lib/R/library/base/help/USJudgeRatings lib/R/library/base/help/USPersonalExpenditure lib/R/library/base/help/Uniform +lib/R/library/base/help/UseMethod lib/R/library/base/help/VADeaths lib/R/library/base/help/Version lib/R/library/base/help/Weibull @@ -1674,6 +1683,7 @@ lib/R/library/base/help/args lib/R/library/base/help/array lib/R/library/base/help/arrows lib/R/library/base/help/as.POSIXlt +lib/R/library/base/help/as.data.frame lib/R/library/base/help/as.environment lib/R/library/base/help/as.function lib/R/library/base/help/assign @@ -1698,8 +1708,8 @@ lib/R/library/base/help/birthday lib/R/library/base/help/body lib/R/library/base/help/box lib/R/library/base/help/boxplot -lib/R/library/base/help/boxplot.formula lib/R/library/base/help/boxplot.stats +lib/R/library/base/help/bquote lib/R/library/base/help/browseEnv lib/R/library/base/help/browseURL lib/R/library/base/help/browser @@ -1738,6 +1748,7 @@ lib/R/library/base/help/commandArgs lib/R/library/base/help/comment lib/R/library/base/help/complete.cases lib/R/library/base/help/complex +lib/R/library/base/help/conditions lib/R/library/base/help/confint lib/R/library/base/help/conflicts lib/R/library/base/help/connections @@ -1763,6 +1774,7 @@ lib/R/library/base/help/data.class lib/R/library/base/help/data.frame lib/R/library/base/help/data.matrix lib/R/library/base/help/dataentry +lib/R/library/base/help/dataframeHelpers lib/R/library/base/help/date lib/R/library/base/help/dcf lib/R/library/base/help/debug @@ -1856,7 +1868,6 @@ lib/R/library/base/help/gl lib/R/library/base/help/glm lib/R/library/base/help/glm.control lib/R/library/base/help/glm.summaries -lib/R/library/base/help/glm.summary lib/R/library/base/help/gnome lib/R/library/base/help/gray lib/R/library/base/help/grep @@ -1902,7 +1913,6 @@ lib/R/library/base/help/layout lib/R/library/base/help/legend lib/R/library/base/help/length lib/R/library/base/help/levels -lib/R/library/base/help/levels.factor lib/R/library/base/help/library lib/R/library/base/help/library.dynam lib/R/library/base/help/license @@ -1912,7 +1922,6 @@ lib/R/library/base/help/list.files lib/R/library/base/help/lm lib/R/library/base/help/lm.influence lib/R/library/base/help/lm.summaries -lib/R/library/base/help/lm.summary lib/R/library/base/help/lmfit lib/R/library/base/help/load lib/R/library/base/help/localeconv @@ -1937,7 +1946,9 @@ lib/R/library/base/help/make.names lib/R/library/base/help/make.packages.html lib/R/library/base/help/make.socket lib/R/library/base/help/make.tables +lib/R/library/base/help/make.unique lib/R/library/base/help/makepredictcall +lib/R/library/base/help/manglePackageName lib/R/library/base/help/manova lib/R/library/base/help/mapply lib/R/library/base/help/margin.table @@ -2007,7 +2018,6 @@ lib/R/library/base/help/package.skeleton lib/R/library/base/help/packageStatus lib/R/library/base/help/page lib/R/library/base/help/pairs -lib/R/library/base/help/pairs.formula lib/R/library/base/help/palette lib/R/library/base/help/palettes lib/R/library/base/help/panel.smooth @@ -2021,6 +2031,7 @@ lib/R/library/base/help/phones lib/R/library/base/help/pictex lib/R/library/base/help/pie lib/R/library/base/help/plot +lib/R/library/base/help/plot.dataframe lib/R/library/base/help/plot.density lib/R/library/base/help/plot.design lib/R/library/base/help/plot.lm @@ -2104,8 +2115,10 @@ lib/R/library/base/help/rle lib/R/library/base/help/rm lib/R/library/base/help/round.POSIXt lib/R/library/base/help/row +lib/R/library/base/help/row.names lib/R/library/base/help/rowsum lib/R/library/base/help/rug +lib/R/library/base/help/sQuote lib/R/library/base/help/sample lib/R/library/base/help/save lib/R/library/base/help/savehistory @@ -2129,6 +2142,7 @@ lib/R/library/base/help/sink lib/R/library/base/help/sleep lib/R/library/base/help/slice.index lib/R/library/base/help/slotOp +lib/R/library/base/help/socketSelect lib/R/library/base/help/solve lib/R/library/base/help/sort lib/R/library/base/help/source @@ -2159,6 +2173,8 @@ lib/R/library/base/help/substr lib/R/library/base/help/sum lib/R/library/base/help/summary lib/R/library/base/help/summary.aov +lib/R/library/base/help/summary.glm +lib/R/library/base/help/summary.lm lib/R/library/base/help/summary.manova lib/R/library/base/help/summaryRprof lib/R/library/base/help/sunflowerplot @@ -2214,6 +2230,7 @@ lib/R/library/base/help/url.show lib/R/library/base/help/uspop lib/R/library/base/help/vcov lib/R/library/base/help/vector +lib/R/library/base/help/vignette lib/R/library/base/help/volcano lib/R/library/base/help/warning lib/R/library/base/help/warnings @@ -2242,7 +2259,6 @@ lib/R/library/base/help/zcbind.ts lib/R/library/base/help/zip.file.extract lib/R/library/base/html/00Index.html lib/R/library/base/html/AIC.html -lib/R/library/base/html/AIC.logLik.html lib/R/library/base/html/Arithmetic.html lib/R/library/base/html/AsIs.html lib/R/library/base/html/BATCH.html @@ -2260,6 +2276,8 @@ lib/R/library/base/html/Defunct.html lib/R/library/base/html/Deprecated.html lib/R/library/base/html/Devices.html lib/R/library/base/html/Exponential.html +lib/R/library/base/html/Extract.data.frame.html +lib/R/library/base/html/Extract.factor.html lib/R/library/base/html/Extract.html lib/R/library/base/html/Extremes.html lib/R/library/base/html/FDist.html @@ -2326,6 +2344,7 @@ lib/R/library/base/html/USArrests.html lib/R/library/base/html/USJudgeRatings.html lib/R/library/base/html/USPersonalExpenditure.html lib/R/library/base/html/Uniform.html +lib/R/library/base/html/UseMethod.html lib/R/library/base/html/VADeaths.html lib/R/library/base/html/Version.html lib/R/library/base/html/Weibull.html @@ -2356,6 +2375,7 @@ lib/R/library/base/html/args.html lib/R/library/base/html/array.html lib/R/library/base/html/arrows.html lib/R/library/base/html/as.POSIXlt.html +lib/R/library/base/html/as.data.frame.html lib/R/library/base/html/as.environment.html lib/R/library/base/html/as.function.html lib/R/library/base/html/assign.html @@ -2379,9 +2399,9 @@ lib/R/library/base/html/bindenv.html lib/R/library/base/html/birthday.html lib/R/library/base/html/body.html lib/R/library/base/html/box.html -lib/R/library/base/html/boxplot.formula.html lib/R/library/base/html/boxplot.html lib/R/library/base/html/boxplot.stats.html +lib/R/library/base/html/bquote.html lib/R/library/base/html/browseEnv.html lib/R/library/base/html/browseURL.html lib/R/library/base/html/browser.html @@ -2420,6 +2440,7 @@ lib/R/library/base/html/commandArgs.html lib/R/library/base/html/comment.html lib/R/library/base/html/complete.cases.html lib/R/library/base/html/complex.html +lib/R/library/base/html/conditions.html lib/R/library/base/html/confint.html lib/R/library/base/html/conflicts.html lib/R/library/base/html/connections.html @@ -2445,6 +2466,7 @@ lib/R/library/base/html/data.frame.html lib/R/library/base/html/data.html lib/R/library/base/html/data.matrix.html lib/R/library/base/html/dataentry.html +lib/R/library/base/html/dataframeHelpers.html lib/R/library/base/html/date.html lib/R/library/base/html/dcf.html lib/R/library/base/html/debug.html @@ -2538,7 +2560,6 @@ lib/R/library/base/html/gl.html lib/R/library/base/html/glm.control.html lib/R/library/base/html/glm.html lib/R/library/base/html/glm.summaries.html -lib/R/library/base/html/glm.summary.html lib/R/library/base/html/gnome.html lib/R/library/base/html/gray.html lib/R/library/base/html/grep.html @@ -2583,7 +2604,6 @@ lib/R/library/base/html/lapply.html lib/R/library/base/html/layout.html lib/R/library/base/html/legend.html lib/R/library/base/html/length.html -lib/R/library/base/html/levels.factor.html lib/R/library/base/html/levels.html lib/R/library/base/html/library.dynam.html lib/R/library/base/html/library.html @@ -2594,7 +2614,6 @@ lib/R/library/base/html/list.html lib/R/library/base/html/lm.html lib/R/library/base/html/lm.influence.html lib/R/library/base/html/lm.summaries.html -lib/R/library/base/html/lm.summary.html lib/R/library/base/html/lmfit.html lib/R/library/base/html/load.html lib/R/library/base/html/localeconv.html @@ -2619,7 +2638,9 @@ lib/R/library/base/html/make.names.html lib/R/library/base/html/make.packages.html.html lib/R/library/base/html/make.socket.html lib/R/library/base/html/make.tables.html +lib/R/library/base/html/make.unique.html lib/R/library/base/html/makepredictcall.html +lib/R/library/base/html/manglePackageName.html lib/R/library/base/html/manova.html lib/R/library/base/html/mapply.html lib/R/library/base/html/margin.table.html @@ -2688,7 +2709,6 @@ lib/R/library/base/html/package.dependencies.html lib/R/library/base/html/package.skeleton.html lib/R/library/base/html/packageStatus.html lib/R/library/base/html/page.html -lib/R/library/base/html/pairs.formula.html lib/R/library/base/html/pairs.html lib/R/library/base/html/palette.html lib/R/library/base/html/palettes.html @@ -2702,6 +2722,7 @@ lib/R/library/base/html/persp.html lib/R/library/base/html/phones.html lib/R/library/base/html/pictex.html lib/R/library/base/html/pie.html +lib/R/library/base/html/plot.dataframe.html lib/R/library/base/html/plot.density.html lib/R/library/base/html/plot.design.html lib/R/library/base/html/plot.html @@ -2786,8 +2807,10 @@ lib/R/library/base/html/rle.html lib/R/library/base/html/rm.html lib/R/library/base/html/round.POSIXt.html lib/R/library/base/html/row.html +lib/R/library/base/html/row.names.html lib/R/library/base/html/rowsum.html lib/R/library/base/html/rug.html +lib/R/library/base/html/sQuote.html lib/R/library/base/html/sample.html lib/R/library/base/html/save.html lib/R/library/base/html/savehistory.html @@ -2811,6 +2834,7 @@ lib/R/library/base/html/sink.html lib/R/library/base/html/sleep.html lib/R/library/base/html/slice.index.html lib/R/library/base/html/slotOp.html +lib/R/library/base/html/socketSelect.html lib/R/library/base/html/solve.html lib/R/library/base/html/sort.html lib/R/library/base/html/source.html @@ -2840,7 +2864,9 @@ lib/R/library/base/html/substitute.html lib/R/library/base/html/substr.html lib/R/library/base/html/sum.html lib/R/library/base/html/summary.aov.html +lib/R/library/base/html/summary.glm.html lib/R/library/base/html/summary.html +lib/R/library/base/html/summary.lm.html lib/R/library/base/html/summary.manova.html lib/R/library/base/html/summaryRprof.html lib/R/library/base/html/sunflowerplot.html @@ -2896,6 +2922,7 @@ lib/R/library/base/html/url.show.html lib/R/library/base/html/uspop.html lib/R/library/base/html/vcov.html lib/R/library/base/html/vector.html +lib/R/library/base/html/vignette.html lib/R/library/base/html/volcano.html lib/R/library/base/html/warning.html lib/R/library/base/html/warnings.html @@ -2922,7 +2949,6 @@ lib/R/library/base/html/zMethods.html lib/R/library/base/html/zScript.html lib/R/library/base/html/zcbind.ts.html lib/R/library/base/html/zip.file.extract.html -lib/R/library/base/latex/AIC.logLik.tex lib/R/library/base/latex/AIC.tex lib/R/library/base/latex/Arithmetic.tex lib/R/library/base/latex/AsIs.tex @@ -2941,6 +2967,8 @@ lib/R/library/base/latex/Defunct.tex lib/R/library/base/latex/Deprecated.tex lib/R/library/base/latex/Devices.tex lib/R/library/base/latex/Exponential.tex +lib/R/library/base/latex/Extract.data.frame.tex +lib/R/library/base/latex/Extract.factor.tex lib/R/library/base/latex/Extract.tex lib/R/library/base/latex/Extremes.tex lib/R/library/base/latex/FDist.tex @@ -3007,6 +3035,7 @@ lib/R/library/base/latex/USArrests.tex lib/R/library/base/latex/USJudgeRatings.tex lib/R/library/base/latex/USPersonalExpenditure.tex lib/R/library/base/latex/Uniform.tex +lib/R/library/base/latex/UseMethod.tex lib/R/library/base/latex/VADeaths.tex lib/R/library/base/latex/Version.tex lib/R/library/base/latex/Weibull.tex @@ -3037,6 +3066,7 @@ lib/R/library/base/latex/args.tex lib/R/library/base/latex/array.tex lib/R/library/base/latex/arrows.tex lib/R/library/base/latex/as.POSIXlt.tex +lib/R/library/base/latex/as.data.frame.tex lib/R/library/base/latex/as.environment.tex lib/R/library/base/latex/as.function.tex lib/R/library/base/latex/assign.tex @@ -3060,9 +3090,9 @@ lib/R/library/base/latex/bindenv.tex lib/R/library/base/latex/birthday.tex lib/R/library/base/latex/body.tex lib/R/library/base/latex/box.tex -lib/R/library/base/latex/boxplot.formula.tex lib/R/library/base/latex/boxplot.stats.tex lib/R/library/base/latex/boxplot.tex +lib/R/library/base/latex/bquote.tex lib/R/library/base/latex/browseEnv.tex lib/R/library/base/latex/browseURL.tex lib/R/library/base/latex/browser.tex @@ -3101,6 +3131,7 @@ lib/R/library/base/latex/commandArgs.tex lib/R/library/base/latex/comment.tex lib/R/library/base/latex/complete.cases.tex lib/R/library/base/latex/complex.tex +lib/R/library/base/latex/conditions.tex lib/R/library/base/latex/confint.tex lib/R/library/base/latex/conflicts.tex lib/R/library/base/latex/connections.tex @@ -3126,6 +3157,7 @@ lib/R/library/base/latex/data.frame.tex lib/R/library/base/latex/data.matrix.tex lib/R/library/base/latex/data.tex lib/R/library/base/latex/dataentry.tex +lib/R/library/base/latex/dataframeHelpers.tex lib/R/library/base/latex/date.tex lib/R/library/base/latex/dcf.tex lib/R/library/base/latex/debug.tex @@ -3218,7 +3250,6 @@ lib/R/library/base/latex/getwd.tex lib/R/library/base/latex/gl.tex lib/R/library/base/latex/glm.control.tex lib/R/library/base/latex/glm.summaries.tex -lib/R/library/base/latex/glm.summary.tex lib/R/library/base/latex/glm.tex lib/R/library/base/latex/gnome.tex lib/R/library/base/latex/gray.tex @@ -3264,7 +3295,6 @@ lib/R/library/base/latex/lapply.tex lib/R/library/base/latex/layout.tex lib/R/library/base/latex/legend.tex lib/R/library/base/latex/length.tex -lib/R/library/base/latex/levels.factor.tex lib/R/library/base/latex/levels.tex lib/R/library/base/latex/library.dynam.tex lib/R/library/base/latex/library.tex @@ -3274,7 +3304,6 @@ lib/R/library/base/latex/list.files.tex lib/R/library/base/latex/list.tex lib/R/library/base/latex/lm.influence.tex lib/R/library/base/latex/lm.summaries.tex -lib/R/library/base/latex/lm.summary.tex lib/R/library/base/latex/lm.tex lib/R/library/base/latex/lmfit.tex lib/R/library/base/latex/load.tex @@ -3300,7 +3329,9 @@ lib/R/library/base/latex/make.names.tex lib/R/library/base/latex/make.packages.html.tex lib/R/library/base/latex/make.socket.tex lib/R/library/base/latex/make.tables.tex +lib/R/library/base/latex/make.unique.tex lib/R/library/base/latex/makepredictcall.tex +lib/R/library/base/latex/manglePackageName.tex lib/R/library/base/latex/manova.tex lib/R/library/base/latex/mapply.tex lib/R/library/base/latex/margin.table.tex @@ -3369,7 +3400,6 @@ lib/R/library/base/latex/package.dependencies.tex lib/R/library/base/latex/package.skeleton.tex lib/R/library/base/latex/packageStatus.tex lib/R/library/base/latex/page.tex -lib/R/library/base/latex/pairs.formula.tex lib/R/library/base/latex/pairs.tex lib/R/library/base/latex/palette.tex lib/R/library/base/latex/palettes.tex @@ -3383,6 +3413,7 @@ lib/R/library/base/latex/persp.tex lib/R/library/base/latex/phones.tex lib/R/library/base/latex/pictex.tex lib/R/library/base/latex/pie.tex +lib/R/library/base/latex/plot.dataframe.tex lib/R/library/base/latex/plot.density.tex lib/R/library/base/latex/plot.design.tex lib/R/library/base/latex/plot.lm.tex @@ -3466,9 +3497,11 @@ lib/R/library/base/latex/rivers.tex lib/R/library/base/latex/rle.tex lib/R/library/base/latex/rm.tex lib/R/library/base/latex/round.POSIXt.tex +lib/R/library/base/latex/row.names.tex lib/R/library/base/latex/row.tex lib/R/library/base/latex/rowsum.tex lib/R/library/base/latex/rug.tex +lib/R/library/base/latex/sQuote.tex lib/R/library/base/latex/sample.tex lib/R/library/base/latex/save.tex lib/R/library/base/latex/savehistory.tex @@ -3492,6 +3525,7 @@ lib/R/library/base/latex/sink.tex lib/R/library/base/latex/sleep.tex lib/R/library/base/latex/slice.index.tex lib/R/library/base/latex/slotOp.tex +lib/R/library/base/latex/socketSelect.tex lib/R/library/base/latex/solve.tex lib/R/library/base/latex/sort.tex lib/R/library/base/latex/source.tex @@ -3521,6 +3555,8 @@ lib/R/library/base/latex/substitute.tex lib/R/library/base/latex/substr.tex lib/R/library/base/latex/sum.tex lib/R/library/base/latex/summary.aov.tex +lib/R/library/base/latex/summary.glm.tex +lib/R/library/base/latex/summary.lm.tex lib/R/library/base/latex/summary.manova.tex lib/R/library/base/latex/summary.tex lib/R/library/base/latex/summaryRprof.tex @@ -3577,6 +3613,7 @@ lib/R/library/base/latex/url.show.tex lib/R/library/base/latex/uspop.tex lib/R/library/base/latex/vcov.tex lib/R/library/base/latex/vector.tex +lib/R/library/base/latex/vignette.tex lib/R/library/base/latex/volcano.tex lib/R/library/base/latex/warning.tex lib/R/library/base/latex/warnings.tex @@ -3609,6 +3646,7 @@ lib/R/library/boot/DESCRIPTION lib/R/library/boot/INDEX lib/R/library/boot/Meta/Rd.rds lib/R/library/boot/Meta/data.rds +lib/R/library/boot/Meta/hsearch.rds lib/R/library/boot/NAMESPACE lib/R/library/boot/R-ex/Imp.Estimates.R lib/R/library/boot/R-ex/abc.ci.R @@ -3636,7 +3674,6 @@ lib/R/library/boot/R-ex/tilt.boot.R lib/R/library/boot/R-ex/tsboot.R lib/R/library/boot/R-ex/var.linear.R lib/R/library/boot/R/boot -lib/R/library/boot/data/00Index lib/R/library/boot/data/acme.rda lib/R/library/boot/data/aids.rda lib/R/library/boot/data/aircondit.rda @@ -3702,8 +3739,6 @@ lib/R/library/boot/help/boot lib/R/library/boot/help/boot-practicals lib/R/library/boot/help/boot.array lib/R/library/boot/help/boot.ci -lib/R/library/boot/help/boot.object -lib/R/library/boot/help/bootci.object lib/R/library/boot/help/brambles lib/R/library/boot/help/breslow lib/R/library/boot/help/calcium @@ -3793,8 +3828,6 @@ lib/R/library/boot/html/boot-practicals.html lib/R/library/boot/html/boot.array.html lib/R/library/boot/html/boot.ci.html lib/R/library/boot/html/boot.html -lib/R/library/boot/html/boot.object.html -lib/R/library/boot/html/bootci.object.html lib/R/library/boot/html/brambles.html lib/R/library/boot/html/breslow.html lib/R/library/boot/html/calcium.html @@ -3882,9 +3915,7 @@ lib/R/library/boot/latex/bigcity.tex lib/R/library/boot/latex/boot-practicals.tex lib/R/library/boot/latex/boot.array.tex lib/R/library/boot/latex/boot.ci.tex -lib/R/library/boot/latex/boot.object.tex lib/R/library/boot/latex/boot.tex -lib/R/library/boot/latex/bootci.object.tex lib/R/library/boot/latex/brambles.tex lib/R/library/boot/latex/breslow.tex lib/R/library/boot/latex/calcium.tex @@ -3965,6 +3996,7 @@ lib/R/library/class/DESCRIPTION lib/R/library/class/INDEX lib/R/library/class/LICENCE lib/R/library/class/Meta/Rd.rds +lib/R/library/class/Meta/hsearch.rds lib/R/library/class/NAMESPACE lib/R/library/class/R-ex/SOM.R lib/R/library/class/R-ex/batchSOM.R @@ -3996,6 +4028,7 @@ lib/R/library/class/help/lvqtest lib/R/library/class/help/multiedit lib/R/library/class/help/olvq1 lib/R/library/class/help/reduce.nn +lib/R/library/class/help/somgrid lib/R/library/class/html/00Index.html lib/R/library/class/html/SOM.html lib/R/library/class/html/batchSOM.html @@ -4011,6 +4044,7 @@ lib/R/library/class/html/lvqtest.html lib/R/library/class/html/multiedit.html lib/R/library/class/html/olvq1.html lib/R/library/class/html/reduce.nn.html +lib/R/library/class/html/somgrid.html lib/R/library/class/latex/SOM.tex lib/R/library/class/latex/batchSOM.tex lib/R/library/class/latex/condense.tex @@ -4025,6 +4059,7 @@ lib/R/library/class/latex/lvqtest.tex lib/R/library/class/latex/multiedit.tex lib/R/library/class/latex/olvq1.tex lib/R/library/class/latex/reduce.nn.tex +lib/R/library/class/latex/somgrid.tex lib/R/library/class/libs/class.so lib/R/library/class/man/class.Rd lib/R/library/cluster/CONTENTS @@ -4032,6 +4067,7 @@ lib/R/library/cluster/DESCRIPTION lib/R/library/cluster/INDEX lib/R/library/cluster/Meta/Rd.rds lib/R/library/cluster/Meta/data.rds +lib/R/library/cluster/Meta/hsearch.rds lib/R/library/cluster/R-ex/agnes.R lib/R/library/cluster/R-ex/agriculture.R lib/R/library/cluster/R-ex/animals.R @@ -4061,7 +4097,6 @@ lib/R/library/cluster/R-ex/summary.agnes.R lib/R/library/cluster/R-ex/summary.clara.R lib/R/library/cluster/R-ex/volume.ellipsoid.R lib/R/library/cluster/R/cluster -lib/R/library/cluster/data/00Index lib/R/library/cluster/data/agriculture.tab lib/R/library/cluster/data/animals.tab lib/R/library/cluster/data/flower.R @@ -4236,6 +4271,7 @@ lib/R/library/ctest/CONTENTS lib/R/library/ctest/DESCRIPTION lib/R/library/ctest/INDEX lib/R/library/ctest/Meta/Rd.rds +lib/R/library/ctest/Meta/hsearch.rds lib/R/library/ctest/NAMESPACE lib/R/library/ctest/R-ex/ansari.test.R lib/R/library/ctest/R-ex/bartlett.test.R @@ -4361,6 +4397,7 @@ lib/R/library/eda/DESCRIPTION lib/R/library/eda/INDEX lib/R/library/eda/Meta/Rd.rds lib/R/library/eda/Meta/demo.rds +lib/R/library/eda/Meta/hsearch.rds lib/R/library/eda/NAMESPACE lib/R/library/eda/R-ex/line.R lib/R/library/eda/R-ex/medpolish.R @@ -4385,6 +4422,7 @@ lib/R/library/foreign/CONTENTS lib/R/library/foreign/DESCRIPTION lib/R/library/foreign/INDEX lib/R/library/foreign/Meta/Rd.rds +lib/R/library/foreign/Meta/hsearch.rds lib/R/library/foreign/R-ex/lookup.xport.R lib/R/library/foreign/R-ex/read.S.R lib/R/library/foreign/R-ex/read.dta.R @@ -4430,48 +4468,35 @@ lib/R/library/grid/CONTENTS lib/R/library/grid/DESCRIPTION lib/R/library/grid/INDEX lib/R/library/grid/Meta/Rd.rds +lib/R/library/grid/Meta/hsearch.rds +lib/R/library/grid/NAMESPACE lib/R/library/grid/R-ex/Grid.R lib/R/library/grid/R-ex/convertNative.R -lib/R/library/grid/R-ex/current.viewport.R lib/R/library/grid/R-ex/gpar.R -lib/R/library/grid/R-ex/grid.circle.R +lib/R/library/grid/R-ex/grid.arrows.R lib/R/library/grid/R-ex/grid.collection.R +lib/R/library/grid/R-ex/grid.convert.R lib/R/library/grid/R-ex/grid.copy.R lib/R/library/grid/R-ex/grid.draw.R lib/R/library/grid/R-ex/grid.edit.R lib/R/library/grid/R-ex/grid.frame.R lib/R/library/grid/R-ex/grid.get.R -lib/R/library/grid/R-ex/grid.grill.R lib/R/library/grid/R-ex/grid.grob.R lib/R/library/grid/R-ex/grid.layout.R -lib/R/library/grid/R-ex/grid.line.to.R -lib/R/library/grid/R-ex/grid.lines.R +lib/R/library/grid/R-ex/grid.locator.R lib/R/library/grid/R-ex/grid.move.to.R -lib/R/library/grid/R-ex/grid.newpage.R -lib/R/library/grid/R-ex/grid.pack.R -lib/R/library/grid/R-ex/grid.place.R lib/R/library/grid/R-ex/grid.plot.and.legend.R -lib/R/library/grid/R-ex/grid.points.R -lib/R/library/grid/R-ex/grid.polygon.R -lib/R/library/grid/R-ex/grid.rect.R -lib/R/library/grid/R-ex/grid.segments.R -lib/R/library/grid/R-ex/grid.set.R lib/R/library/grid/R-ex/grid.show.layout.R lib/R/library/grid/R-ex/grid.show.viewport.R lib/R/library/grid/R-ex/grid.text.R -lib/R/library/grid/R-ex/grid.xaxis.R -lib/R/library/grid/R-ex/grid.yaxis.R -lib/R/library/grid/R-ex/pop.viewport.R -lib/R/library/grid/R-ex/push.viewport.R lib/R/library/grid/R-ex/unit.R -lib/R/library/grid/R-ex/unit.c.R -lib/R/library/grid/R-ex/unit.length.R lib/R/library/grid/R-ex/unit.pmin.R lib/R/library/grid/R-ex/unit.rep.R lib/R/library/grid/R-ex/viewport.R lib/R/library/grid/R/grid -lib/R/library/grid/doc/changes_0.7-4.txt -lib/R/library/grid/doc/uguide_0.7-4.pdf +lib/R/library/grid/doc/changes.txt +lib/R/library/grid/doc/index.html +lib/R/library/grid/doc/uguide.pdf lib/R/library/grid/help/AnIndex lib/R/library/grid/help/Grid lib/R/library/grid/help/absolute.size @@ -4480,8 +4505,10 @@ lib/R/library/grid/help/current.viewport lib/R/library/grid/help/dataViewport lib/R/library/grid/help/gpar lib/R/library/grid/help/grid-internal +lib/R/library/grid/help/grid.arrows lib/R/library/grid/help/grid.circle lib/R/library/grid/help/grid.collection +lib/R/library/grid/help/grid.convert lib/R/library/grid/help/grid.copy lib/R/library/grid/help/grid.display.list lib/R/library/grid/help/grid.draw @@ -4491,8 +4518,8 @@ lib/R/library/grid/help/grid.get lib/R/library/grid/help/grid.grill lib/R/library/grid/help/grid.grob lib/R/library/grid/help/grid.layout -lib/R/library/grid/help/grid.line.to lib/R/library/grid/help/grid.lines +lib/R/library/grid/help/grid.locator lib/R/library/grid/help/grid.move.to lib/R/library/grid/help/grid.newpage lib/R/library/grid/help/grid.pack @@ -4528,8 +4555,10 @@ lib/R/library/grid/html/current.viewport.html lib/R/library/grid/html/dataViewport.html lib/R/library/grid/html/gpar.html lib/R/library/grid/html/grid-internal.html +lib/R/library/grid/html/grid.arrows.html lib/R/library/grid/html/grid.circle.html lib/R/library/grid/html/grid.collection.html +lib/R/library/grid/html/grid.convert.html lib/R/library/grid/html/grid.copy.html lib/R/library/grid/html/grid.display.list.html lib/R/library/grid/html/grid.draw.html @@ -4539,8 +4568,8 @@ lib/R/library/grid/html/grid.get.html lib/R/library/grid/html/grid.grill.html lib/R/library/grid/html/grid.grob.html lib/R/library/grid/html/grid.layout.html -lib/R/library/grid/html/grid.line.to.html lib/R/library/grid/html/grid.lines.html +lib/R/library/grid/html/grid.locator.html lib/R/library/grid/html/grid.move.to.html lib/R/library/grid/html/grid.newpage.html lib/R/library/grid/html/grid.pack.html @@ -4575,8 +4604,10 @@ lib/R/library/grid/latex/current.viewport.tex lib/R/library/grid/latex/dataViewport.tex lib/R/library/grid/latex/gpar.tex lib/R/library/grid/latex/grid-internal.tex +lib/R/library/grid/latex/grid.arrows.tex lib/R/library/grid/latex/grid.circle.tex lib/R/library/grid/latex/grid.collection.tex +lib/R/library/grid/latex/grid.convert.tex lib/R/library/grid/latex/grid.copy.tex lib/R/library/grid/latex/grid.display.list.tex lib/R/library/grid/latex/grid.draw.tex @@ -4586,8 +4617,8 @@ lib/R/library/grid/latex/grid.get.tex lib/R/library/grid/latex/grid.grill.tex lib/R/library/grid/latex/grid.grob.tex lib/R/library/grid/latex/grid.layout.tex -lib/R/library/grid/latex/grid.line.to.tex lib/R/library/grid/latex/grid.lines.tex +lib/R/library/grid/latex/grid.locator.tex lib/R/library/grid/latex/grid.move.to.tex lib/R/library/grid/latex/grid.newpage.tex lib/R/library/grid/latex/grid.pack.tex @@ -4624,6 +4655,8 @@ lib/R/library/lattice/INDEX lib/R/library/lattice/Meta/Rd.rds lib/R/library/lattice/Meta/data.rds lib/R/library/lattice/Meta/demo.rds +lib/R/library/lattice/Meta/hsearch.rds +lib/R/library/lattice/NAMESPACE lib/R/library/lattice/R-ex/cloud.R lib/R/library/lattice/R-ex/histogram.R lib/R/library/lattice/R-ex/levelplot.R @@ -4639,7 +4672,6 @@ lib/R/library/lattice/R-ex/tmd.R lib/R/library/lattice/R-ex/trellis.par.get.R lib/R/library/lattice/R-ex/xyplot.R lib/R/library/lattice/R/lattice -lib/R/library/lattice/data/00Index lib/R/library/lattice/data/barley.R lib/R/library/lattice/data/environmental.R lib/R/library/lattice/data/ethanol.R @@ -4650,12 +4682,12 @@ lib/R/library/lattice/demo/00Index lib/R/library/lattice/demo/lattice.R lib/R/library/lattice/help/AnIndex lib/R/library/lattice/help/Lattice +lib/R/library/lattice/help/Rows lib/R/library/lattice/help/banking lib/R/library/lattice/help/cloud lib/R/library/lattice/help/draw.colorkey lib/R/library/lattice/help/draw.key lib/R/library/lattice/help/histogram -lib/R/library/lattice/help/lattice-internal lib/R/library/lattice/help/latticeParseFormula lib/R/library/lattice/help/levelplot lib/R/library/lattice/help/llines @@ -4694,12 +4726,12 @@ lib/R/library/lattice/help/update.trellis lib/R/library/lattice/help/xyplot lib/R/library/lattice/html/00Index.html lib/R/library/lattice/html/Lattice.html +lib/R/library/lattice/html/Rows.html lib/R/library/lattice/html/banking.html lib/R/library/lattice/html/cloud.html lib/R/library/lattice/html/draw.colorkey.html lib/R/library/lattice/html/draw.key.html lib/R/library/lattice/html/histogram.html -lib/R/library/lattice/html/lattice-internal.html lib/R/library/lattice/html/latticeParseFormula.html lib/R/library/lattice/html/levelplot.html lib/R/library/lattice/html/llines.html @@ -4737,12 +4769,12 @@ lib/R/library/lattice/html/trellis.par.get.html lib/R/library/lattice/html/update.trellis.html lib/R/library/lattice/html/xyplot.html lib/R/library/lattice/latex/Lattice.tex +lib/R/library/lattice/latex/Rows.tex lib/R/library/lattice/latex/banking.tex lib/R/library/lattice/latex/cloud.tex lib/R/library/lattice/latex/draw.colorkey.tex lib/R/library/lattice/latex/draw.key.tex lib/R/library/lattice/latex/histogram.tex -lib/R/library/lattice/latex/lattice-internal.tex lib/R/library/lattice/latex/latticeParseFormula.tex lib/R/library/lattice/latex/levelplot.tex lib/R/library/lattice/latex/llines.tex @@ -4785,6 +4817,7 @@ lib/R/library/lqs/CONTENTS lib/R/library/lqs/DESCRIPTION lib/R/library/lqs/INDEX lib/R/library/lqs/Meta/Rd.rds +lib/R/library/lqs/Meta/hsearch.rds lib/R/library/lqs/NAMESPACE lib/R/library/lqs/R-ex/cov.rob.R lib/R/library/lqs/R-ex/lqs.R @@ -4807,10 +4840,13 @@ lib/R/library/methods/CONTENTS lib/R/library/methods/DESCRIPTION lib/R/library/methods/INDEX lib/R/library/methods/Meta/Rd.rds +lib/R/library/methods/Meta/hsearch.rds +lib/R/library/methods/NAMESPACE lib/R/library/methods/R-ex/GenericFunctions.R lib/R/library/methods/R-ex/NextMethod.R lib/R/library/methods/R-ex/as.R lib/R/library/methods/R-ex/getClass.R +lib/R/library/methods/R-ex/getMethod.R lib/R/library/methods/R-ex/getPackageName.R lib/R/library/methods/R-ex/hasArg.R lib/R/library/methods/R-ex/is.R @@ -4819,6 +4855,7 @@ lib/R/library/methods/R-ex/new.R lib/R/library/methods/R-ex/promptClass.R lib/R/library/methods/R-ex/representation.R lib/R/library/methods/R-ex/setClass.R +lib/R/library/methods/R-ex/setClassUnion.R lib/R/library/methods/R-ex/setGeneric.R lib/R/library/methods/R-ex/setMethod.R lib/R/library/methods/R-ex/setOldClass.R @@ -4831,6 +4868,7 @@ lib/R/library/methods/R/methods lib/R/library/methods/help/AnIndex lib/R/library/methods/help/BasicClasses lib/R/library/methods/help/Classes +lib/R/library/methods/help/Documentation lib/R/library/methods/help/EmptyMethodsList-class lib/R/library/methods/help/EnvironmentClass lib/R/library/methods/help/GenericFunctions @@ -4857,15 +4895,18 @@ lib/R/library/methods/help/getClass lib/R/library/methods/help/getMethod lib/R/library/methods/help/getPackageName lib/R/library/methods/help/hasArg +lib/R/library/methods/help/initialize-methods lib/R/library/methods/help/is lib/R/library/methods/help/isSealedMethod lib/R/library/methods/help/languageEl lib/R/library/methods/help/methodUtilities lib/R/library/methods/help/new +lib/R/library/methods/help/oldGet lib/R/library/methods/help/promptClass lib/R/library/methods/help/promptMethods lib/R/library/methods/help/representation lib/R/library/methods/help/setClass +lib/R/library/methods/help/setClassUnion lib/R/library/methods/help/setGeneric lib/R/library/methods/help/setMethod lib/R/library/methods/help/setOldClass @@ -4880,6 +4921,7 @@ lib/R/library/methods/help/zBasicFunsList lib/R/library/methods/html/00Index.html lib/R/library/methods/html/BasicClasses.html lib/R/library/methods/html/Classes.html +lib/R/library/methods/html/Documentation.html lib/R/library/methods/html/EmptyMethodsList-class.html lib/R/library/methods/html/EnvironmentClass.html lib/R/library/methods/html/GenericFunctions.html @@ -4906,15 +4948,18 @@ lib/R/library/methods/html/getClass.html lib/R/library/methods/html/getMethod.html lib/R/library/methods/html/getPackageName.html lib/R/library/methods/html/hasArg.html +lib/R/library/methods/html/initialize-methods.html lib/R/library/methods/html/is.html lib/R/library/methods/html/isSealedMethod.html lib/R/library/methods/html/languageEl.html lib/R/library/methods/html/methodUtilities.html lib/R/library/methods/html/new.html +lib/R/library/methods/html/oldGet.html lib/R/library/methods/html/promptClass.html lib/R/library/methods/html/promptMethods.html lib/R/library/methods/html/representation.html lib/R/library/methods/html/setClass.html +lib/R/library/methods/html/setClassUnion.html lib/R/library/methods/html/setGeneric.html lib/R/library/methods/html/setMethod.html lib/R/library/methods/html/setOldClass.html @@ -4928,6 +4973,7 @@ lib/R/library/methods/html/validObject.html lib/R/library/methods/html/zBasicFunsList.html lib/R/library/methods/latex/BasicClasses.tex lib/R/library/methods/latex/Classes.tex +lib/R/library/methods/latex/Documentation.tex lib/R/library/methods/latex/EmptyMethodsList-class.tex lib/R/library/methods/latex/EnvironmentClass.tex lib/R/library/methods/latex/GenericFunctions.tex @@ -4954,15 +5000,18 @@ lib/R/library/methods/latex/getClass.tex lib/R/library/methods/latex/getMethod.tex lib/R/library/methods/latex/getPackageName.tex lib/R/library/methods/latex/hasArg.tex +lib/R/library/methods/latex/initialize-methods.tex lib/R/library/methods/latex/is.tex lib/R/library/methods/latex/isSealedMethod.tex lib/R/library/methods/latex/languageEl.tex lib/R/library/methods/latex/methodUtilities.tex lib/R/library/methods/latex/new.tex +lib/R/library/methods/latex/oldGet.tex lib/R/library/methods/latex/promptClass.tex lib/R/library/methods/latex/promptMethods.tex lib/R/library/methods/latex/representation.tex lib/R/library/methods/latex/setClass.tex +lib/R/library/methods/latex/setClassUnion.tex lib/R/library/methods/latex/setGeneric.tex lib/R/library/methods/latex/setMethod.tex lib/R/library/methods/latex/setOldClass.tex @@ -4980,114 +5029,164 @@ lib/R/library/mgcv/CONTENTS lib/R/library/mgcv/DESCRIPTION lib/R/library/mgcv/INDEX lib/R/library/mgcv/Meta/Rd.rds +lib/R/library/mgcv/Meta/hsearch.rds lib/R/library/mgcv/R-ex/GAMsetup.R lib/R/library/mgcv/R-ex/QT.R +lib/R/library/mgcv/R-ex/exclude.too.far.R lib/R/library/mgcv/R-ex/gam.R lib/R/library/mgcv/R-ex/gam.check.R lib/R/library/mgcv/R-ex/gam.models.R +lib/R/library/mgcv/R-ex/gam.neg.bin.R lib/R/library/mgcv/R-ex/gam.side.conditions.R lib/R/library/mgcv/R-ex/mgcv.R lib/R/library/mgcv/R-ex/mono.con.R lib/R/library/mgcv/R-ex/null.space.dimension.R lib/R/library/mgcv/R-ex/pcls.R -lib/R/library/mgcv/R-ex/persp.gam.R lib/R/library/mgcv/R-ex/plot.gam.R lib/R/library/mgcv/R-ex/predict.gam.R lib/R/library/mgcv/R-ex/s.R lib/R/library/mgcv/R-ex/summary.gam.R lib/R/library/mgcv/R-ex/uniquecombs.R +lib/R/library/mgcv/R-ex/vis.gam.R lib/R/library/mgcv/R/mgcv lib/R/library/mgcv/help/AnIndex lib/R/library/mgcv/help/GAMsetup lib/R/library/mgcv/help/QT +lib/R/library/mgcv/help/exclude.too.far +lib/R/library/mgcv/help/full.score lib/R/library/mgcv/help/gam lib/R/library/mgcv/help/gam.check lib/R/library/mgcv/help/gam.control lib/R/library/mgcv/help/gam.fit lib/R/library/mgcv/help/gam.models -lib/R/library/mgcv/help/gam.nbut +lib/R/library/mgcv/help/gam.neg.bin lib/R/library/mgcv/help/gam.parser lib/R/library/mgcv/help/gam.selection lib/R/library/mgcv/help/gam.setup lib/R/library/mgcv/help/gam.side.conditions -lib/R/library/mgcv/help/get.family +lib/R/library/mgcv/help/magic +lib/R/library/mgcv/help/magic.post.proc lib/R/library/mgcv/help/mgcv lib/R/library/mgcv/help/mono.con -lib/R/library/mgcv/help/neg.binom +lib/R/library/mgcv/help/mroot lib/R/library/mgcv/help/null.space.dimension lib/R/library/mgcv/help/pcls -lib/R/library/mgcv/help/persp.gam lib/R/library/mgcv/help/plot.gam lib/R/library/mgcv/help/predict.gam lib/R/library/mgcv/help/print.gam lib/R/library/mgcv/help/residuals.gam lib/R/library/mgcv/help/s lib/R/library/mgcv/help/summary.gam -lib/R/library/mgcv/help/theta.maxl lib/R/library/mgcv/help/uniquecombs +lib/R/library/mgcv/help/vis.gam lib/R/library/mgcv/html/00Index.html lib/R/library/mgcv/html/GAMsetup.html lib/R/library/mgcv/html/QT.html +lib/R/library/mgcv/html/exclude.too.far.html +lib/R/library/mgcv/html/full.score.html lib/R/library/mgcv/html/gam.check.html lib/R/library/mgcv/html/gam.control.html lib/R/library/mgcv/html/gam.fit.html lib/R/library/mgcv/html/gam.html lib/R/library/mgcv/html/gam.models.html -lib/R/library/mgcv/html/gam.nbut.html +lib/R/library/mgcv/html/gam.neg.bin.html lib/R/library/mgcv/html/gam.parser.html lib/R/library/mgcv/html/gam.selection.html lib/R/library/mgcv/html/gam.setup.html lib/R/library/mgcv/html/gam.side.conditions.html -lib/R/library/mgcv/html/get.family.html +lib/R/library/mgcv/html/magic.html +lib/R/library/mgcv/html/magic.post.proc.html lib/R/library/mgcv/html/mgcv.html lib/R/library/mgcv/html/mono.con.html -lib/R/library/mgcv/html/neg.binom.html +lib/R/library/mgcv/html/mroot.html lib/R/library/mgcv/html/null.space.dimension.html lib/R/library/mgcv/html/pcls.html -lib/R/library/mgcv/html/persp.gam.html lib/R/library/mgcv/html/plot.gam.html lib/R/library/mgcv/html/predict.gam.html lib/R/library/mgcv/html/print.gam.html lib/R/library/mgcv/html/residuals.gam.html lib/R/library/mgcv/html/s.html lib/R/library/mgcv/html/summary.gam.html -lib/R/library/mgcv/html/theta.maxl.html lib/R/library/mgcv/html/uniquecombs.html +lib/R/library/mgcv/html/vis.gam.html lib/R/library/mgcv/latex/GAMsetup.tex lib/R/library/mgcv/latex/QT.tex +lib/R/library/mgcv/latex/exclude.too.far.tex +lib/R/library/mgcv/latex/full.score.tex lib/R/library/mgcv/latex/gam.check.tex lib/R/library/mgcv/latex/gam.control.tex lib/R/library/mgcv/latex/gam.fit.tex lib/R/library/mgcv/latex/gam.models.tex -lib/R/library/mgcv/latex/gam.nbut.tex +lib/R/library/mgcv/latex/gam.neg.bin.tex lib/R/library/mgcv/latex/gam.parser.tex lib/R/library/mgcv/latex/gam.selection.tex lib/R/library/mgcv/latex/gam.setup.tex lib/R/library/mgcv/latex/gam.side.conditions.tex lib/R/library/mgcv/latex/gam.tex -lib/R/library/mgcv/latex/get.family.tex +lib/R/library/mgcv/latex/magic.post.proc.tex +lib/R/library/mgcv/latex/magic.tex lib/R/library/mgcv/latex/mgcv.tex lib/R/library/mgcv/latex/mono.con.tex -lib/R/library/mgcv/latex/neg.binom.tex +lib/R/library/mgcv/latex/mroot.tex lib/R/library/mgcv/latex/null.space.dimension.tex lib/R/library/mgcv/latex/pcls.tex -lib/R/library/mgcv/latex/persp.gam.tex lib/R/library/mgcv/latex/plot.gam.tex lib/R/library/mgcv/latex/predict.gam.tex lib/R/library/mgcv/latex/print.gam.tex lib/R/library/mgcv/latex/residuals.gam.tex lib/R/library/mgcv/latex/s.tex lib/R/library/mgcv/latex/summary.gam.tex -lib/R/library/mgcv/latex/theta.maxl.tex lib/R/library/mgcv/latex/uniquecombs.tex +lib/R/library/mgcv/latex/vis.gam.tex lib/R/library/mgcv/libs/mgcv.so lib/R/library/mgcv/man/mgcv.Rd +lib/R/library/mle/CONTENTS +lib/R/library/mle/DESCRIPTION +lib/R/library/mle/INDEX +lib/R/library/mle/Meta/Rd.rds +lib/R/library/mle/Meta/hsearch.rds +lib/R/library/mle/NAMESPACE +lib/R/library/mle/R-ex/mle.R +lib/R/library/mle/R-ex/summary.mle-class.R +lib/R/library/mle/R/all.rda +lib/R/library/mle/R/mle +lib/R/library/mle/help/AnIndex +lib/R/library/mle/help/confint-methods +lib/R/library/mle/help/mle +lib/R/library/mle/help/mle-class +lib/R/library/mle/help/plot-methods +lib/R/library/mle/help/profile-methods +lib/R/library/mle/help/profile.mle-class +lib/R/library/mle/help/show-methods +lib/R/library/mle/help/summary-methods +lib/R/library/mle/help/summary.mle-class +lib/R/library/mle/html/00Index.html +lib/R/library/mle/html/confint-methods.html +lib/R/library/mle/html/mle-class.html +lib/R/library/mle/html/mle.html +lib/R/library/mle/html/plot-methods.html +lib/R/library/mle/html/profile-methods.html +lib/R/library/mle/html/profile.mle-class.html +lib/R/library/mle/html/show-methods.html +lib/R/library/mle/html/summary-methods.html +lib/R/library/mle/html/summary.mle-class.html +lib/R/library/mle/latex/confint-methods.tex +lib/R/library/mle/latex/mle-class.tex +lib/R/library/mle/latex/mle.tex +lib/R/library/mle/latex/plot-methods.tex +lib/R/library/mle/latex/profile-methods.tex +lib/R/library/mle/latex/profile.mle-class.tex +lib/R/library/mle/latex/show-methods.tex +lib/R/library/mle/latex/summary-methods.tex +lib/R/library/mle/latex/summary.mle-class.tex +lib/R/library/mle/man/mle.Rd lib/R/library/modreg/CONTENTS lib/R/library/modreg/COPYRIGHTS lib/R/library/modreg/DESCRIPTION lib/R/library/modreg/INDEX lib/R/library/modreg/Meta/Rd.rds lib/R/library/modreg/Meta/data.rds +lib/R/library/modreg/Meta/hsearch.rds lib/R/library/modreg/NAMESPACE lib/R/library/modreg/R-ex/isoreg.R lib/R/library/modreg/R-ex/ksmooth.R @@ -5158,6 +5257,7 @@ lib/R/library/mva/DESCRIPTION lib/R/library/mva/INDEX lib/R/library/mva/Meta/Rd.rds lib/R/library/mva/Meta/data.rds +lib/R/library/mva/Meta/hsearch.rds lib/R/library/mva/NAMESPACE lib/R/library/mva/R-ex/Harman23.cor.R lib/R/library/mva/R-ex/Harman74.cor.R @@ -5275,6 +5375,7 @@ lib/R/library/nlme/DESCRIPTION lib/R/library/nlme/INDEX lib/R/library/nlme/Meta/Rd.rds lib/R/library/nlme/Meta/data.rds +lib/R/library/nlme/Meta/hsearch.rds lib/R/library/nlme/NAMESPACE lib/R/library/nlme/R-ex/ACF.R lib/R/library/nlme/R-ex/ACF.gls.R @@ -5533,7 +5634,6 @@ lib/R/library/nlme/R-ex/varIdent.R lib/R/library/nlme/R-ex/varPower.R lib/R/library/nlme/R-ex/varWeights.R lib/R/library/nlme/R/nlme -lib/R/library/nlme/data/00Index lib/R/library/nlme/data/Alfalfa.rda lib/R/library/nlme/data/Assay.rda lib/R/library/nlme/data/BodyWeight.rda @@ -6456,6 +6556,7 @@ lib/R/library/nls/DESCRIPTION lib/R/library/nls/INDEX lib/R/library/nls/Meta/Rd.rds lib/R/library/nls/Meta/data.rds +lib/R/library/nls/Meta/hsearch.rds lib/R/library/nls/NAMESPACE lib/R/library/nls/R-ex/BOD.R lib/R/library/nls/R-ex/CO2.R @@ -6494,8 +6595,6 @@ lib/R/library/nls/R-ex/profile.nls.R lib/R/library/nls/R-ex/profiler.R lib/R/library/nls/R-ex/profiler.nls.R lib/R/library/nls/R-ex/selfStart.R -lib/R/library/nls/R-ex/selfStart.default.R -lib/R/library/nls/R-ex/selfStart.formula.R lib/R/library/nls/R-ex/setNames.R lib/R/library/nls/R-ex/sortedXyData.R lib/R/library/nls/R/nls @@ -6546,8 +6645,6 @@ lib/R/library/nls/help/profile.nls lib/R/library/nls/help/profiler lib/R/library/nls/help/profiler.nls lib/R/library/nls/help/selfStart -lib/R/library/nls/help/selfStart.default -lib/R/library/nls/help/selfStart.formula lib/R/library/nls/help/setNames lib/R/library/nls/help/sortedXyData lib/R/library/nls/html/00Index.html @@ -6587,8 +6684,6 @@ lib/R/library/nls/html/predict.nls.html lib/R/library/nls/html/profile.nls.html lib/R/library/nls/html/profiler.html lib/R/library/nls/html/profiler.nls.html -lib/R/library/nls/html/selfStart.default.html -lib/R/library/nls/html/selfStart.formula.html lib/R/library/nls/html/selfStart.html lib/R/library/nls/html/setNames.html lib/R/library/nls/html/sortedXyData.html @@ -6628,8 +6723,6 @@ lib/R/library/nls/latex/predict.nls.tex lib/R/library/nls/latex/profile.nls.tex lib/R/library/nls/latex/profiler.nls.tex lib/R/library/nls/latex/profiler.tex -lib/R/library/nls/latex/selfStart.default.tex -lib/R/library/nls/latex/selfStart.formula.tex lib/R/library/nls/latex/selfStart.tex lib/R/library/nls/latex/setNames.tex lib/R/library/nls/latex/sortedXyData.tex @@ -6640,6 +6733,7 @@ lib/R/library/nnet/DESCRIPTION lib/R/library/nnet/INDEX lib/R/library/nnet/LICENCE lib/R/library/nnet/Meta/Rd.rds +lib/R/library/nnet/Meta/hsearch.rds lib/R/library/nnet/NAMESPACE lib/R/library/nnet/R-ex/class.ind.R lib/R/library/nnet/R-ex/multinom.R @@ -6675,6 +6769,7 @@ lib/R/library/rpart/DESCRIPTION lib/R/library/rpart/INDEX lib/R/library/rpart/Meta/Rd.rds lib/R/library/rpart/Meta/data.rds +lib/R/library/rpart/Meta/hsearch.rds lib/R/library/rpart/NAMESPACE lib/R/library/rpart/R-ex/car.test.frame.R lib/R/library/rpart/R-ex/cu.summary.R @@ -6696,7 +6791,6 @@ lib/R/library/rpart/R-ex/summary.rpart.R lib/R/library/rpart/R-ex/text.rpart.R lib/R/library/rpart/R-ex/xpred.rpart.R lib/R/library/rpart/R/rpart -lib/R/library/rpart/data/00Index lib/R/library/rpart/data/car.test.frame.csv lib/R/library/rpart/data/cu.summary.rda lib/R/library/rpart/data/kyphosis.tab @@ -6718,13 +6812,9 @@ lib/R/library/rpart/help/printcp lib/R/library/rpart/help/prune.rpart lib/R/library/rpart/help/residuals.rpart lib/R/library/rpart/help/rpart -lib/R/library/rpart/help/rpart.anova -lib/R/library/rpart/help/rpart.class +lib/R/library/rpart/help/rpart-internal lib/R/library/rpart/help/rpart.control -lib/R/library/rpart/help/rpart.exp -lib/R/library/rpart/help/rpart.matrix lib/R/library/rpart/help/rpart.object -lib/R/library/rpart/help/rpart.poisson lib/R/library/rpart/help/rpconvert lib/R/library/rpart/help/rsq.rpart lib/R/library/rpart/help/snip.rpart @@ -6748,14 +6838,10 @@ lib/R/library/rpart/html/print.rpart.html lib/R/library/rpart/html/printcp.html lib/R/library/rpart/html/prune.rpart.html lib/R/library/rpart/html/residuals.rpart.html -lib/R/library/rpart/html/rpart.anova.html -lib/R/library/rpart/html/rpart.class.html +lib/R/library/rpart/html/rpart-internal.html lib/R/library/rpart/html/rpart.control.html -lib/R/library/rpart/html/rpart.exp.html lib/R/library/rpart/html/rpart.html -lib/R/library/rpart/html/rpart.matrix.html lib/R/library/rpart/html/rpart.object.html -lib/R/library/rpart/html/rpart.poisson.html lib/R/library/rpart/html/rpconvert.html lib/R/library/rpart/html/rsq.rpart.html lib/R/library/rpart/html/snip.rpart.html @@ -6778,13 +6864,9 @@ lib/R/library/rpart/latex/print.rpart.tex lib/R/library/rpart/latex/printcp.tex lib/R/library/rpart/latex/prune.rpart.tex lib/R/library/rpart/latex/residuals.rpart.tex -lib/R/library/rpart/latex/rpart.anova.tex -lib/R/library/rpart/latex/rpart.class.tex +lib/R/library/rpart/latex/rpart-internal.tex lib/R/library/rpart/latex/rpart.control.tex -lib/R/library/rpart/latex/rpart.exp.tex -lib/R/library/rpart/latex/rpart.matrix.tex lib/R/library/rpart/latex/rpart.object.tex -lib/R/library/rpart/latex/rpart.poisson.tex lib/R/library/rpart/latex/rpart.tex lib/R/library/rpart/latex/rpconvert.tex lib/R/library/rpart/latex/rsq.rpart.tex @@ -6800,6 +6882,7 @@ lib/R/library/spatial/DESCRIPTION lib/R/library/spatial/INDEX lib/R/library/spatial/LICENCE lib/R/library/spatial/Meta/Rd.rds +lib/R/library/spatial/Meta/hsearch.rds lib/R/library/spatial/NAMESPACE lib/R/library/spatial/PP.files lib/R/library/spatial/R-ex/Kaver.R @@ -6917,6 +7000,7 @@ lib/R/library/splines/CONTENTS lib/R/library/splines/DESCRIPTION lib/R/library/splines/INDEX lib/R/library/splines/Meta/Rd.rds +lib/R/library/splines/Meta/hsearch.rds lib/R/library/splines/NAMESPACE lib/R/library/splines/R-ex/asVector.R lib/R/library/splines/R-ex/backSpline.R @@ -6979,6 +7063,7 @@ lib/R/library/stepfun/CONTENTS lib/R/library/stepfun/DESCRIPTION lib/R/library/stepfun/INDEX lib/R/library/stepfun/Meta/Rd.rds +lib/R/library/stepfun/Meta/hsearch.rds lib/R/library/stepfun/NAMESPACE lib/R/library/stepfun/R-ex/ecdf.R lib/R/library/stepfun/R-ex/plot.stepfun.R @@ -7002,6 +7087,7 @@ lib/R/library/survival/DESCRIPTION lib/R/library/survival/INDEX lib/R/library/survival/Meta/Rd.rds lib/R/library/survival/Meta/data.rds +lib/R/library/survival/Meta/hsearch.rds lib/R/library/survival/R-ex/Surv.R lib/R/library/survival/R-ex/anova.coxph.R lib/R/library/survival/R-ex/as.date.R @@ -7043,6 +7129,7 @@ lib/R/library/survival/R-ex/survreg.control.R lib/R/library/survival/R-ex/survreg.distributions.R lib/R/library/survival/R-ex/survreg.old.R lib/R/library/survival/R-ex/tcut.R +lib/R/library/survival/R-ex/tobin.R lib/R/library/survival/R-ex/untangle.specials.R lib/R/library/survival/R/survival lib/R/library/survival/data/aml.rda @@ -7058,6 +7145,7 @@ lib/R/library/survival/data/pbc.rda lib/R/library/survival/data/ratetables.rda lib/R/library/survival/data/rats.rda lib/R/library/survival/data/stanford2.rda +lib/R/library/survival/data/tobin.txt lib/R/library/survival/data/veteran.rda lib/R/library/survival/help/AnIndex lib/R/library/survival/help/Surv @@ -7117,6 +7205,7 @@ lib/R/library/survival/help/survreg.distributions lib/R/library/survival/help/survreg.object lib/R/library/survival/help/survreg.old lib/R/library/survival/help/tcut +lib/R/library/survival/help/tobin lib/R/library/survival/help/untangle.specials lib/R/library/survival/help/veteran lib/R/library/survival/html/00Index.html @@ -7177,6 +7266,7 @@ lib/R/library/survival/html/survreg.html lib/R/library/survival/html/survreg.object.html lib/R/library/survival/html/survreg.old.html lib/R/library/survival/html/tcut.html +lib/R/library/survival/html/tobin.html lib/R/library/survival/html/untangle.specials.html lib/R/library/survival/html/veteran.html lib/R/library/survival/latex/Surv.tex @@ -7236,6 +7326,7 @@ lib/R/library/survival/latex/survreg.object.tex lib/R/library/survival/latex/survreg.old.tex lib/R/library/survival/latex/survreg.tex lib/R/library/survival/latex/tcut.tex +lib/R/library/survival/latex/tobin.tex lib/R/library/survival/latex/untangle.specials.tex lib/R/library/survival/latex/veteran.tex lib/R/library/survival/libs/survival.so @@ -7246,11 +7337,12 @@ lib/R/library/tcltk/DESCRIPTION lib/R/library/tcltk/INDEX lib/R/library/tcltk/Meta/Rd.rds lib/R/library/tcltk/Meta/demo.rds +lib/R/library/tcltk/Meta/hsearch.rds +lib/R/library/tcltk/NAMESPACE lib/R/library/tcltk/R-ex/TclInterface.R lib/R/library/tcltk/R-ex/TkCommands.R lib/R/library/tcltk/R-ex/TkWidgetcmds.R lib/R/library/tcltk/R-ex/TkWidgets.R -lib/R/library/tcltk/R-ex/tkpager.R lib/R/library/tcltk/R/tcltk lib/R/library/tcltk/demo/00Index lib/R/library/tcltk/demo/tkcanvas.R @@ -7295,10 +7387,13 @@ lib/R/library/tools/CONTENTS lib/R/library/tools/DESCRIPTION lib/R/library/tools/INDEX lib/R/library/tools/Meta/Rd.rds +lib/R/library/tools/Meta/hsearch.rds lib/R/library/tools/NAMESPACE lib/R/library/tools/R-ex/Sweave.R lib/R/library/tools/R-ex/SweaveSyntConv.R lib/R/library/tools/R-ex/checkFF.R +lib/R/library/tools/R-ex/delimMatch.R +lib/R/library/tools/R-ex/fileutils.R lib/R/library/tools/R-ex/md5sum.R lib/R/library/tools/R-ex/undoc.R lib/R/library/tools/R/tools @@ -7315,6 +7410,8 @@ lib/R/library/tools/help/checkMD5sums lib/R/library/tools/help/checkTnF lib/R/library/tools/help/checkVignettes lib/R/library/tools/help/codoc +lib/R/library/tools/help/delimMatch +lib/R/library/tools/help/fileutils lib/R/library/tools/help/md5sum lib/R/library/tools/help/tools-internal lib/R/library/tools/help/undoc @@ -7330,6 +7427,8 @@ lib/R/library/tools/html/checkMD5sums.html lib/R/library/tools/html/checkTnF.html lib/R/library/tools/html/checkVignettes.html lib/R/library/tools/html/codoc.html +lib/R/library/tools/html/delimMatch.html +lib/R/library/tools/html/fileutils.html lib/R/library/tools/html/md5sum.html lib/R/library/tools/html/tools-internal.html lib/R/library/tools/html/undoc.html @@ -7344,6 +7443,8 @@ lib/R/library/tools/latex/checkMD5sums.tex lib/R/library/tools/latex/checkTnF.tex lib/R/library/tools/latex/checkVignettes.tex lib/R/library/tools/latex/codoc.tex +lib/R/library/tools/latex/delimMatch.tex +lib/R/library/tools/latex/fileutils.tex lib/R/library/tools/latex/md5sum.tex lib/R/library/tools/latex/tools-internal.tex lib/R/library/tools/latex/undoc.tex @@ -7354,6 +7455,7 @@ lib/R/library/ts/DESCRIPTION lib/R/library/ts/INDEX lib/R/library/ts/Meta/Rd.rds lib/R/library/ts/Meta/data.rds +lib/R/library/ts/Meta/hsearch.rds lib/R/library/ts/NAMESPACE lib/R/library/ts/R-ex/ARMAacf.R lib/R/library/ts/R-ex/ARMAtoMA.R @@ -7610,9 +7712,11 @@ lib/R/modules/internet.so lib/R/modules/lapack.so lib/R/modules/vfonts.so lib/R/share/R/firstlib.R +lib/R/share/R/nsrdaload.R lib/R/share/make/config.mk lib/R/share/make/shlib.mk lib/R/share/make/tests.mk +lib/R/share/make/vars.mk lib/R/share/perl/R/Dcf.pm lib/R/share/perl/R/Logfile.pm lib/R/share/perl/R/Rd.pm @@ -7623,7 +7727,6 @@ lib/R/share/perl/R/Utils.pm lib/R/share/perl/R/Vars.pm lib/R/share/perl/Rd2contents.pl lib/R/share/perl/Text/DelimMatch.pm -lib/R/share/perl/build-help-mac.pl lib/R/share/perl/build-help-windows.pl lib/R/share/perl/build-help.pl lib/R/share/perl/extract-examples.pl @@ -7642,6 +7745,7 @@ lib/R/share/texmf/hyperref.cfg lib/R/share/texmf/omsaer.fd lib/R/share/texmf/omsaett.fd lib/R/share/texmf/omscmtt.fd +lib/R/share/texmf/upquote.sty @dirrm lib/R/share/texmf @dirrm lib/R/share/sh @dirrm lib/R/share/perl/Text @@ -7780,6 +7884,14 @@ lib/R/share/texmf/omscmtt.fd @dirrm lib/R/library/modreg/R @dirrm lib/R/library/modreg/Meta @dirrm lib/R/library/modreg +@dirrm lib/R/library/mle/man +@dirrm lib/R/library/mle/latex +@dirrm lib/R/library/mle/html +@dirrm lib/R/library/mle/help +@dirrm lib/R/library/mle/R-ex +@dirrm lib/R/library/mle/R +@dirrm lib/R/library/mle/Meta +@dirrm lib/R/library/mle @dirrm lib/R/library/mgcv/man @dirrm lib/R/library/mgcv/libs @dirrm lib/R/library/mgcv/latex diff --git a/math/R/Makefile b/math/R/Makefile index 139ca8ab6a54..d04f5ca17422 100644 --- a/math/R/Makefile +++ b/math/R/Makefile @@ -1,3 +1,4 @@ +# ex: ts=8 sts=0 noet # New ports collection makefile for: R (letter) # Date created: Fri Feb 9 10:50:25 EST 2001 # Whom: Maurice Castro @@ -6,56 +7,77 @@ # PORTNAME= R -PORTVERSION= 1.7.1 +PORTVERSION= 1.8.0 CATEGORIES= math MASTER_SITES= http://cran.r-project.org/src/base/ \ ftp://cran.r-project.org/pub/R/src/base/ \ http://cran.at.r-project.org/src/base/ \ http://cran.au.r-project.org/src/base/ \ + http://cran.br.r-project.org/src/base/ \ http://cran.ch.r-project.org/src/base/ \ + http://cran.es.r-project.org/src/base/ \ http://cran.dk.r-project.org/src/base/ \ http://cran.hu.r-project.org/src/base/ \ http://cran.uk.r-project.org/src/base/ \ http://cran.us.r-project.org/src/base/ \ + http://cran.za.r-project.org/src/base/ \ ftp://ftp.u-aizu.ac.jp/pub/lang/R/CRAN/src/base/ \ - http://lib.stat.cmu.edu/R/CRAN/src/base/ + http://lib.stat.cmu.edu/R/CRAN/src/base/ \ + http://cran.stat.ucla.edu/src/base/ \ + http://probability.ca/cran/src/base/ \ + http://www.ibiblio.org/pub/languages/R/CRAN/src/base/ \ + http://www.bioconductor.org/CRAN/src/base/ PKGNAMESUFFIX= -${PAPERSIZE} EXTRACT_SUFX= .tgz MAINTAINER= vangyzen@stat.duke.edu COMMENT= A language for statistical computing and graphics +CONFLICTS?= R-a4-* + LIB_DEPENDS= tcl84:${PORTSDIR}/lang/tcl84 \ tk84:${PORTSDIR}/x11-toolkits/tk84 \ jpeg.9:${PORTSDIR}/graphics/jpeg \ png.5:${PORTSDIR}/graphics/png \ - pcre.0:${PORTSDIR}/devel/pcre \ - lapack.3:${PORTSDIR}/math/lapack + pcre.0:${PORTSDIR}/devel/pcre + +.if defined(WITH_ATLAS) +LIB_DEPENDS+= f77blas.1:${PORTSDIR}/math/atlas +CONFIGURE_ARGS= --with-lapack="-lalapack -lcblas" --with-blas="-lf77blas" +.else +LIB_DEPENDS+= lapack.3:${PORTSDIR}/math/lapack +CONFIGURE_ARGS= --with-lapack="-llapack" --with-blas="-lblas" +.endif GNU_CONFIGURE= yes USE_XLIB= yes USE_PERL5= yes -CONFIGURE_ENV= R_PAPERSIZE=${PAPERSIZE} \ +CONFIGURE_ENV= R_PAPERSIZE=${PAPERSIZE} FFLAGS="${FFLAGS}" \ INSTALL_DATA="${INSTALL} ${COPY} ${_SHROWNGRP} -m 644" -CONFIGURE_ARGS= --with-lapack +CONFIGURE_ARGS+=--enable-R-shlib PAPERSIZE?= letter .if ${PAPERSIZE} != letter && ${PAPERSIZE} != a4 .BEGIN: @${ECHO} "Invalid value for PAPERSIZE: \"${PAPERSIZE}\"" - @${ECHO} "Possible values are: a4 and letter." + @${ECHO} "Possible values are: a4 letter" @${FALSE} .endif MAN1= R.1 +test check: build + @(cd ${WRKSRC}; ${MAKE} check) +check-all: build + @(cd ${WRKSRC}; ${MAKE} check-all) + .include -#.if ${OSVERSION} >= 500113 -#BROKEN= "Does not compile" -#.endif - -test check: build - @(cd ${WRKSRC}; make check) +# Work around a gcc-3.3.1 internal compiler error on 5.1-CURRENT. +.if ${OSVERSION} >= 501103 +pre-build: + @(cd ${WRKSRC}/src/include; ${MAKE} Rmath.h) + @(cd ${WRKSRC}/src/main; ${MAKE} CFLAGS+=-O0 plotmath.o) +.endif .include diff --git a/math/R/distinfo b/math/R/distinfo index a438e43ae205..82b13acda835 100644 --- a/math/R/distinfo +++ b/math/R/distinfo @@ -1 +1 @@ -MD5 (R-1.7.1.tgz) = 833c2a9a62818211f2f9f0353ecd9bbd +MD5 (R-1.8.0.tgz) = bb019d7e12e38ac8a8bc247f06cc6b42 diff --git a/math/R/pkg-descr b/math/R/pkg-descr index bac2f88956c4..a5394140f21e 100644 --- a/math/R/pkg-descr +++ b/math/R/pkg-descr @@ -1,20 +1,22 @@ -R is a language and environment for statistical computing and graphics. -It is a GNU project which is similar to the S language and environment -which was developed at Bell Laboratories (formerly AT&T, now Lucent -Technologies) by John Chambers and colleagues. R can be considered as a -different implementation of S. There are some important differences, -but much code written for S runs unaltered under R. +From : -R provides a wide variety of statistical (linear and nonlinear modelling, -classical statistical tests, time-series analysis, classification, -clustering, ...) and graphical techniques, and is highly extensible. -The S language is often the vehicle of choice for research in statistical -methodology, and R provides an Open Source route to participation in that -activity. + R is a language and environment for statistical computing and graphics. + It is a GNU project which is similar to the S language and environment + which was developed at Bell Laboratories (formerly AT&T, now Lucent + Technologies) by John Chambers and colleagues. R can be considered as a + different implementation of S. There are some important differences, + but much code written for S runs unaltered under R. -One of R's strengths is the ease with which well-designed publication-quality -plots can be produced, including mathematical symbols and formulae where -needed. Great care has been taken over the defaults for the minor design -choices in graphics, but the user retains full control. + R provides a wide variety of statistical (linear and nonlinear modelling, + classical statistical tests, time-series analysis, classification, + clustering, ...) and graphical techniques, and is highly extensible. + The S language is often the vehicle of choice for research in statistical + methodology, and R provides an Open Source route to participation in that + activity. + + One of R's strengths is the ease with which well-designed + publication-quality plots can be produced, including mathematical symbols + and formulae where needed. Great care has been taken over the defaults for + the minor design choices in graphics, but the user retains full control. WWW: http://www.R-project.org/ diff --git a/math/R/pkg-plist b/math/R/pkg-plist index fff84538a265..2e21f0209219 100644 --- a/math/R/pkg-plist +++ b/math/R/pkg-plist @@ -98,7 +98,6 @@ lib/R/bin/Rd2dvi lib/R/bin/Rd2txt lib/R/bin/Rdconv lib/R/bin/Rdiff -lib/R/bin/Rdindex lib/R/bin/Rprof lib/R/bin/SHLIB lib/R/bin/Sd2Rd @@ -106,7 +105,9 @@ lib/R/bin/build lib/R/bin/check lib/R/bin/config lib/R/bin/f77 +lib/R/bin/libR.so lib/R/bin/libtool +lib/R/bin/mkinstalldirs lib/R/bin/pager lib/R/bin/texi2dvi lib/R/doc/KEYWORDS @@ -160,8 +161,8 @@ lib/R/include/R_ext/GraphicsDevice.h lib/R/include/R_ext/GraphicsEngine.h lib/R/include/R_ext/Lapack.h lib/R/include/R_ext/Linpack.h -lib/R/include/R_ext/Mathlib.h lib/R/include/R_ext/Memory.h +lib/R/include/R_ext/Parse.h lib/R/include/R_ext/Print.h lib/R/include/R_ext/PrtUtil.h lib/R/include/R_ext/R-ftp-http.h @@ -184,6 +185,7 @@ lib/R/library/KernSmooth/CONTENTS lib/R/library/KernSmooth/DESCRIPTION lib/R/library/KernSmooth/INDEX lib/R/library/KernSmooth/Meta/Rd.rds +lib/R/library/KernSmooth/Meta/hsearch.rds lib/R/library/KernSmooth/NAMESPACE lib/R/library/KernSmooth/R-ex/bkde.R lib/R/library/KernSmooth/R-ex/bkde2D.R @@ -224,6 +226,7 @@ lib/R/library/MASS/INDEX lib/R/library/MASS/LICENCE lib/R/library/MASS/Meta/Rd.rds lib/R/library/MASS/Meta/data.rds +lib/R/library/MASS/Meta/hsearch.rds lib/R/library/MASS/NAMESPACE lib/R/library/MASS/R-ex/Insurance.R lib/R/library/MASS/R-ex/Null.R @@ -460,7 +463,6 @@ lib/R/library/MASS/help/eagles lib/R/library/MASS/help/epil lib/R/library/MASS/help/eqscplot lib/R/library/MASS/help/farms -lib/R/library/MASS/help/fdeaths lib/R/library/MASS/help/fgl lib/R/library/MASS/help/fitdistr lib/R/library/MASS/help/forbes @@ -496,7 +498,6 @@ lib/R/library/MASS/help/logtrans lib/R/library/MASS/help/mammals lib/R/library/MASS/help/mca lib/R/library/MASS/help/mcycle -lib/R/library/MASS/help/mdeaths lib/R/library/MASS/help/menarche lib/R/library/MASS/help/michelson lib/R/library/MASS/help/minn38 @@ -619,7 +620,6 @@ lib/R/library/MASS/html/eagles.html lib/R/library/MASS/html/epil.html lib/R/library/MASS/html/eqscplot.html lib/R/library/MASS/html/farms.html -lib/R/library/MASS/html/fdeaths.html lib/R/library/MASS/html/fgl.html lib/R/library/MASS/html/fitdistr.html lib/R/library/MASS/html/forbes.html @@ -655,7 +655,6 @@ lib/R/library/MASS/html/logtrans.html lib/R/library/MASS/html/mammals.html lib/R/library/MASS/html/mca.html lib/R/library/MASS/html/mcycle.html -lib/R/library/MASS/html/mdeaths.html lib/R/library/MASS/html/menarche.html lib/R/library/MASS/html/michelson.html lib/R/library/MASS/html/minn38.html @@ -777,7 +776,6 @@ lib/R/library/MASS/latex/eagles.tex lib/R/library/MASS/latex/epil.tex lib/R/library/MASS/latex/eqscplot.tex lib/R/library/MASS/latex/farms.tex -lib/R/library/MASS/latex/fdeaths.tex lib/R/library/MASS/latex/fgl.tex lib/R/library/MASS/latex/fitdistr.tex lib/R/library/MASS/latex/forbes.tex @@ -813,7 +811,6 @@ lib/R/library/MASS/latex/logtrans.tex lib/R/library/MASS/latex/mammals.tex lib/R/library/MASS/latex/mca.tex lib/R/library/MASS/latex/mcycle.tex -lib/R/library/MASS/latex/mdeaths.tex lib/R/library/MASS/latex/menarche.tex lib/R/library/MASS/latex/michelson.tex lib/R/library/MASS/latex/minn38.tex @@ -915,6 +912,7 @@ lib/R/library/base/INDEX lib/R/library/base/Meta/Rd.rds lib/R/library/base/Meta/data.rds lib/R/library/base/Meta/demo.rds +lib/R/library/base/Meta/hsearch.rds lib/R/library/base/R-ex/AIC.R lib/R/library/base/R-ex/Arithmetic.R lib/R/library/base/R-ex/Bessel.R @@ -929,6 +927,8 @@ lib/R/library/base/R-ex/DateTimeClasses.R lib/R/library/base/R-ex/Devices.R lib/R/library/base/R-ex/Exponential.R lib/R/library/base/R-ex/Extract.R +lib/R/library/base/R-ex/Extract.data.frame.R +lib/R/library/base/R-ex/Extract.factor.R lib/R/library/base/R-ex/Extremes.R lib/R/library/base/R-ex/FDist.R lib/R/library/base/R-ex/Formaldehyde.R @@ -1032,8 +1032,8 @@ lib/R/library/base/R-ex/birthday.R lib/R/library/base/R-ex/body.R lib/R/library/base/R-ex/box.R lib/R/library/base/R-ex/boxplot.R -lib/R/library/base/R-ex/boxplot.formula.R lib/R/library/base/R-ex/boxplot.stats.R +lib/R/library/base/R-ex/bquote.R lib/R/library/base/R-ex/browseEnv.R lib/R/library/base/R-ex/bxp.R lib/R/library/base/R-ex/by.R @@ -1067,6 +1067,7 @@ lib/R/library/base/R-ex/commandArgs.R lib/R/library/base/R-ex/comment.R lib/R/library/base/R-ex/complete.cases.R lib/R/library/base/R-ex/complex.R +lib/R/library/base/R-ex/conditions.R lib/R/library/base/R-ex/confint.R lib/R/library/base/R-ex/conflicts.R lib/R/library/base/R-ex/connections.R @@ -1169,7 +1170,6 @@ lib/R/library/base/R-ex/getwd.R lib/R/library/base/R-ex/gl.R lib/R/library/base/R-ex/glm.R lib/R/library/base/R-ex/glm.control.R -lib/R/library/base/R-ex/glm.summary.R lib/R/library/base/R-ex/gnome.R lib/R/library/base/R-ex/gray.R lib/R/library/base/R-ex/grep.R @@ -1208,7 +1208,7 @@ lib/R/library/base/R-ex/lapply.R lib/R/library/base/R-ex/layout.R lib/R/library/base/R-ex/legend.R lib/R/library/base/R-ex/length.R -lib/R/library/base/R-ex/levels.factor.R +lib/R/library/base/R-ex/levels.R lib/R/library/base/R-ex/library.R lib/R/library/base/R-ex/library.dynam.R lib/R/library/base/R-ex/lines.R @@ -1217,7 +1217,6 @@ lib/R/library/base/R-ex/list.files.R lib/R/library/base/R-ex/lm.R lib/R/library/base/R-ex/lm.influence.R lib/R/library/base/R-ex/lm.summaries.R -lib/R/library/base/R-ex/lm.summary.R lib/R/library/base/R-ex/lmfit.R lib/R/library/base/R-ex/load.R lib/R/library/base/R-ex/localeconv.R @@ -1236,7 +1235,9 @@ lib/R/library/base/R-ex/mahalanobis.R lib/R/library/base/R-ex/make.link.R lib/R/library/base/R-ex/make.names.R lib/R/library/base/R-ex/make.socket.R +lib/R/library/base/R-ex/make.unique.R lib/R/library/base/R-ex/makepredictcall.R +lib/R/library/base/R-ex/manglePackageName.R lib/R/library/base/R-ex/mapply.R lib/R/library/base/R-ex/margin.table.R lib/R/library/base/R-ex/mat.or.vec.R @@ -1295,7 +1296,6 @@ lib/R/library/base/R-ex/package.contents.R lib/R/library/base/R-ex/package.skeleton.R lib/R/library/base/R-ex/packageStatus.R lib/R/library/base/R-ex/pairs.R -lib/R/library/base/R-ex/pairs.formula.R lib/R/library/base/R-ex/palette.R lib/R/library/base/R-ex/palettes.R lib/R/library/base/R-ex/panel.smooth.R @@ -1309,6 +1309,7 @@ lib/R/library/base/R-ex/phones.R lib/R/library/base/R-ex/pictex.R lib/R/library/base/R-ex/pie.R lib/R/library/base/R-ex/plot.R +lib/R/library/base/R-ex/plot.dataframe.R lib/R/library/base/R-ex/plot.design.R lib/R/library/base/R-ex/plot.lm.R lib/R/library/base/R-ex/plot.table.R @@ -1381,6 +1382,7 @@ lib/R/library/base/R-ex/round.POSIXt.R lib/R/library/base/R-ex/row.R lib/R/library/base/R-ex/rowsum.R lib/R/library/base/R-ex/rug.R +lib/R/library/base/R-ex/sQuote.R lib/R/library/base/R-ex/sample.R lib/R/library/base/R-ex/save.R lib/R/library/base/R-ex/savehistory.R @@ -1394,12 +1396,14 @@ lib/R/library/base/R-ex/segments.R lib/R/library/base/R-ex/seq.POSIXt.R lib/R/library/base/R-ex/seq.R lib/R/library/base/R-ex/sequence.R +lib/R/library/base/R-ex/serialize.R lib/R/library/base/R-ex/sets.R lib/R/library/base/R-ex/showConnections.R lib/R/library/base/R-ex/sign.R lib/R/library/base/R-ex/sink.R lib/R/library/base/R-ex/sleep.R lib/R/library/base/R-ex/slice.index.R +lib/R/library/base/R-ex/socketSelect.R lib/R/library/base/R-ex/solve.R lib/R/library/base/R-ex/sort.R lib/R/library/base/R-ex/splinefun.R @@ -1425,6 +1429,8 @@ lib/R/library/base/R-ex/substitute.R lib/R/library/base/R-ex/substr.R lib/R/library/base/R-ex/summary.R lib/R/library/base/R-ex/summary.aov.R +lib/R/library/base/R-ex/summary.glm.R +lib/R/library/base/R-ex/summary.lm.R lib/R/library/base/R-ex/summary.manova.R lib/R/library/base/R-ex/summaryRprof.R lib/R/library/base/R-ex/sunflowerplot.R @@ -1471,6 +1477,7 @@ lib/R/library/base/R-ex/update.packages.R lib/R/library/base/R-ex/url.show.R lib/R/library/base/R-ex/uspop.R lib/R/library/base/R-ex/vector.R +lib/R/library/base/R-ex/vignette.R lib/R/library/base/R-ex/volcano.R lib/R/library/base/R-ex/warning.R lib/R/library/base/R-ex/warnings.R @@ -1559,7 +1566,6 @@ lib/R/library/base/demo/plotmath.R lib/R/library/base/demo/recursion.R lib/R/library/base/demo/scoping.R lib/R/library/base/help/AIC -lib/R/library/base/help/AIC.logLik lib/R/library/base/help/AnIndex lib/R/library/base/help/Arithmetic lib/R/library/base/help/AsIs @@ -1579,6 +1585,8 @@ lib/R/library/base/help/Deprecated lib/R/library/base/help/Devices lib/R/library/base/help/Exponential lib/R/library/base/help/Extract +lib/R/library/base/help/Extract.data.frame +lib/R/library/base/help/Extract.factor lib/R/library/base/help/Extremes lib/R/library/base/help/FDist lib/R/library/base/help/Foreign @@ -1644,6 +1652,7 @@ lib/R/library/base/help/USArrests lib/R/library/base/help/USJudgeRatings lib/R/library/base/help/USPersonalExpenditure lib/R/library/base/help/Uniform +lib/R/library/base/help/UseMethod lib/R/library/base/help/VADeaths lib/R/library/base/help/Version lib/R/library/base/help/Weibull @@ -1674,6 +1683,7 @@ lib/R/library/base/help/args lib/R/library/base/help/array lib/R/library/base/help/arrows lib/R/library/base/help/as.POSIXlt +lib/R/library/base/help/as.data.frame lib/R/library/base/help/as.environment lib/R/library/base/help/as.function lib/R/library/base/help/assign @@ -1698,8 +1708,8 @@ lib/R/library/base/help/birthday lib/R/library/base/help/body lib/R/library/base/help/box lib/R/library/base/help/boxplot -lib/R/library/base/help/boxplot.formula lib/R/library/base/help/boxplot.stats +lib/R/library/base/help/bquote lib/R/library/base/help/browseEnv lib/R/library/base/help/browseURL lib/R/library/base/help/browser @@ -1738,6 +1748,7 @@ lib/R/library/base/help/commandArgs lib/R/library/base/help/comment lib/R/library/base/help/complete.cases lib/R/library/base/help/complex +lib/R/library/base/help/conditions lib/R/library/base/help/confint lib/R/library/base/help/conflicts lib/R/library/base/help/connections @@ -1763,6 +1774,7 @@ lib/R/library/base/help/data.class lib/R/library/base/help/data.frame lib/R/library/base/help/data.matrix lib/R/library/base/help/dataentry +lib/R/library/base/help/dataframeHelpers lib/R/library/base/help/date lib/R/library/base/help/dcf lib/R/library/base/help/debug @@ -1856,7 +1868,6 @@ lib/R/library/base/help/gl lib/R/library/base/help/glm lib/R/library/base/help/glm.control lib/R/library/base/help/glm.summaries -lib/R/library/base/help/glm.summary lib/R/library/base/help/gnome lib/R/library/base/help/gray lib/R/library/base/help/grep @@ -1902,7 +1913,6 @@ lib/R/library/base/help/layout lib/R/library/base/help/legend lib/R/library/base/help/length lib/R/library/base/help/levels -lib/R/library/base/help/levels.factor lib/R/library/base/help/library lib/R/library/base/help/library.dynam lib/R/library/base/help/license @@ -1912,7 +1922,6 @@ lib/R/library/base/help/list.files lib/R/library/base/help/lm lib/R/library/base/help/lm.influence lib/R/library/base/help/lm.summaries -lib/R/library/base/help/lm.summary lib/R/library/base/help/lmfit lib/R/library/base/help/load lib/R/library/base/help/localeconv @@ -1937,7 +1946,9 @@ lib/R/library/base/help/make.names lib/R/library/base/help/make.packages.html lib/R/library/base/help/make.socket lib/R/library/base/help/make.tables +lib/R/library/base/help/make.unique lib/R/library/base/help/makepredictcall +lib/R/library/base/help/manglePackageName lib/R/library/base/help/manova lib/R/library/base/help/mapply lib/R/library/base/help/margin.table @@ -2007,7 +2018,6 @@ lib/R/library/base/help/package.skeleton lib/R/library/base/help/packageStatus lib/R/library/base/help/page lib/R/library/base/help/pairs -lib/R/library/base/help/pairs.formula lib/R/library/base/help/palette lib/R/library/base/help/palettes lib/R/library/base/help/panel.smooth @@ -2021,6 +2031,7 @@ lib/R/library/base/help/phones lib/R/library/base/help/pictex lib/R/library/base/help/pie lib/R/library/base/help/plot +lib/R/library/base/help/plot.dataframe lib/R/library/base/help/plot.density lib/R/library/base/help/plot.design lib/R/library/base/help/plot.lm @@ -2104,8 +2115,10 @@ lib/R/library/base/help/rle lib/R/library/base/help/rm lib/R/library/base/help/round.POSIXt lib/R/library/base/help/row +lib/R/library/base/help/row.names lib/R/library/base/help/rowsum lib/R/library/base/help/rug +lib/R/library/base/help/sQuote lib/R/library/base/help/sample lib/R/library/base/help/save lib/R/library/base/help/savehistory @@ -2129,6 +2142,7 @@ lib/R/library/base/help/sink lib/R/library/base/help/sleep lib/R/library/base/help/slice.index lib/R/library/base/help/slotOp +lib/R/library/base/help/socketSelect lib/R/library/base/help/solve lib/R/library/base/help/sort lib/R/library/base/help/source @@ -2159,6 +2173,8 @@ lib/R/library/base/help/substr lib/R/library/base/help/sum lib/R/library/base/help/summary lib/R/library/base/help/summary.aov +lib/R/library/base/help/summary.glm +lib/R/library/base/help/summary.lm lib/R/library/base/help/summary.manova lib/R/library/base/help/summaryRprof lib/R/library/base/help/sunflowerplot @@ -2214,6 +2230,7 @@ lib/R/library/base/help/url.show lib/R/library/base/help/uspop lib/R/library/base/help/vcov lib/R/library/base/help/vector +lib/R/library/base/help/vignette lib/R/library/base/help/volcano lib/R/library/base/help/warning lib/R/library/base/help/warnings @@ -2242,7 +2259,6 @@ lib/R/library/base/help/zcbind.ts lib/R/library/base/help/zip.file.extract lib/R/library/base/html/00Index.html lib/R/library/base/html/AIC.html -lib/R/library/base/html/AIC.logLik.html lib/R/library/base/html/Arithmetic.html lib/R/library/base/html/AsIs.html lib/R/library/base/html/BATCH.html @@ -2260,6 +2276,8 @@ lib/R/library/base/html/Defunct.html lib/R/library/base/html/Deprecated.html lib/R/library/base/html/Devices.html lib/R/library/base/html/Exponential.html +lib/R/library/base/html/Extract.data.frame.html +lib/R/library/base/html/Extract.factor.html lib/R/library/base/html/Extract.html lib/R/library/base/html/Extremes.html lib/R/library/base/html/FDist.html @@ -2326,6 +2344,7 @@ lib/R/library/base/html/USArrests.html lib/R/library/base/html/USJudgeRatings.html lib/R/library/base/html/USPersonalExpenditure.html lib/R/library/base/html/Uniform.html +lib/R/library/base/html/UseMethod.html lib/R/library/base/html/VADeaths.html lib/R/library/base/html/Version.html lib/R/library/base/html/Weibull.html @@ -2356,6 +2375,7 @@ lib/R/library/base/html/args.html lib/R/library/base/html/array.html lib/R/library/base/html/arrows.html lib/R/library/base/html/as.POSIXlt.html +lib/R/library/base/html/as.data.frame.html lib/R/library/base/html/as.environment.html lib/R/library/base/html/as.function.html lib/R/library/base/html/assign.html @@ -2379,9 +2399,9 @@ lib/R/library/base/html/bindenv.html lib/R/library/base/html/birthday.html lib/R/library/base/html/body.html lib/R/library/base/html/box.html -lib/R/library/base/html/boxplot.formula.html lib/R/library/base/html/boxplot.html lib/R/library/base/html/boxplot.stats.html +lib/R/library/base/html/bquote.html lib/R/library/base/html/browseEnv.html lib/R/library/base/html/browseURL.html lib/R/library/base/html/browser.html @@ -2420,6 +2440,7 @@ lib/R/library/base/html/commandArgs.html lib/R/library/base/html/comment.html lib/R/library/base/html/complete.cases.html lib/R/library/base/html/complex.html +lib/R/library/base/html/conditions.html lib/R/library/base/html/confint.html lib/R/library/base/html/conflicts.html lib/R/library/base/html/connections.html @@ -2445,6 +2466,7 @@ lib/R/library/base/html/data.frame.html lib/R/library/base/html/data.html lib/R/library/base/html/data.matrix.html lib/R/library/base/html/dataentry.html +lib/R/library/base/html/dataframeHelpers.html lib/R/library/base/html/date.html lib/R/library/base/html/dcf.html lib/R/library/base/html/debug.html @@ -2538,7 +2560,6 @@ lib/R/library/base/html/gl.html lib/R/library/base/html/glm.control.html lib/R/library/base/html/glm.html lib/R/library/base/html/glm.summaries.html -lib/R/library/base/html/glm.summary.html lib/R/library/base/html/gnome.html lib/R/library/base/html/gray.html lib/R/library/base/html/grep.html @@ -2583,7 +2604,6 @@ lib/R/library/base/html/lapply.html lib/R/library/base/html/layout.html lib/R/library/base/html/legend.html lib/R/library/base/html/length.html -lib/R/library/base/html/levels.factor.html lib/R/library/base/html/levels.html lib/R/library/base/html/library.dynam.html lib/R/library/base/html/library.html @@ -2594,7 +2614,6 @@ lib/R/library/base/html/list.html lib/R/library/base/html/lm.html lib/R/library/base/html/lm.influence.html lib/R/library/base/html/lm.summaries.html -lib/R/library/base/html/lm.summary.html lib/R/library/base/html/lmfit.html lib/R/library/base/html/load.html lib/R/library/base/html/localeconv.html @@ -2619,7 +2638,9 @@ lib/R/library/base/html/make.names.html lib/R/library/base/html/make.packages.html.html lib/R/library/base/html/make.socket.html lib/R/library/base/html/make.tables.html +lib/R/library/base/html/make.unique.html lib/R/library/base/html/makepredictcall.html +lib/R/library/base/html/manglePackageName.html lib/R/library/base/html/manova.html lib/R/library/base/html/mapply.html lib/R/library/base/html/margin.table.html @@ -2688,7 +2709,6 @@ lib/R/library/base/html/package.dependencies.html lib/R/library/base/html/package.skeleton.html lib/R/library/base/html/packageStatus.html lib/R/library/base/html/page.html -lib/R/library/base/html/pairs.formula.html lib/R/library/base/html/pairs.html lib/R/library/base/html/palette.html lib/R/library/base/html/palettes.html @@ -2702,6 +2722,7 @@ lib/R/library/base/html/persp.html lib/R/library/base/html/phones.html lib/R/library/base/html/pictex.html lib/R/library/base/html/pie.html +lib/R/library/base/html/plot.dataframe.html lib/R/library/base/html/plot.density.html lib/R/library/base/html/plot.design.html lib/R/library/base/html/plot.html @@ -2786,8 +2807,10 @@ lib/R/library/base/html/rle.html lib/R/library/base/html/rm.html lib/R/library/base/html/round.POSIXt.html lib/R/library/base/html/row.html +lib/R/library/base/html/row.names.html lib/R/library/base/html/rowsum.html lib/R/library/base/html/rug.html +lib/R/library/base/html/sQuote.html lib/R/library/base/html/sample.html lib/R/library/base/html/save.html lib/R/library/base/html/savehistory.html @@ -2811,6 +2834,7 @@ lib/R/library/base/html/sink.html lib/R/library/base/html/sleep.html lib/R/library/base/html/slice.index.html lib/R/library/base/html/slotOp.html +lib/R/library/base/html/socketSelect.html lib/R/library/base/html/solve.html lib/R/library/base/html/sort.html lib/R/library/base/html/source.html @@ -2840,7 +2864,9 @@ lib/R/library/base/html/substitute.html lib/R/library/base/html/substr.html lib/R/library/base/html/sum.html lib/R/library/base/html/summary.aov.html +lib/R/library/base/html/summary.glm.html lib/R/library/base/html/summary.html +lib/R/library/base/html/summary.lm.html lib/R/library/base/html/summary.manova.html lib/R/library/base/html/summaryRprof.html lib/R/library/base/html/sunflowerplot.html @@ -2896,6 +2922,7 @@ lib/R/library/base/html/url.show.html lib/R/library/base/html/uspop.html lib/R/library/base/html/vcov.html lib/R/library/base/html/vector.html +lib/R/library/base/html/vignette.html lib/R/library/base/html/volcano.html lib/R/library/base/html/warning.html lib/R/library/base/html/warnings.html @@ -2922,7 +2949,6 @@ lib/R/library/base/html/zMethods.html lib/R/library/base/html/zScript.html lib/R/library/base/html/zcbind.ts.html lib/R/library/base/html/zip.file.extract.html -lib/R/library/base/latex/AIC.logLik.tex lib/R/library/base/latex/AIC.tex lib/R/library/base/latex/Arithmetic.tex lib/R/library/base/latex/AsIs.tex @@ -2941,6 +2967,8 @@ lib/R/library/base/latex/Defunct.tex lib/R/library/base/latex/Deprecated.tex lib/R/library/base/latex/Devices.tex lib/R/library/base/latex/Exponential.tex +lib/R/library/base/latex/Extract.data.frame.tex +lib/R/library/base/latex/Extract.factor.tex lib/R/library/base/latex/Extract.tex lib/R/library/base/latex/Extremes.tex lib/R/library/base/latex/FDist.tex @@ -3007,6 +3035,7 @@ lib/R/library/base/latex/USArrests.tex lib/R/library/base/latex/USJudgeRatings.tex lib/R/library/base/latex/USPersonalExpenditure.tex lib/R/library/base/latex/Uniform.tex +lib/R/library/base/latex/UseMethod.tex lib/R/library/base/latex/VADeaths.tex lib/R/library/base/latex/Version.tex lib/R/library/base/latex/Weibull.tex @@ -3037,6 +3066,7 @@ lib/R/library/base/latex/args.tex lib/R/library/base/latex/array.tex lib/R/library/base/latex/arrows.tex lib/R/library/base/latex/as.POSIXlt.tex +lib/R/library/base/latex/as.data.frame.tex lib/R/library/base/latex/as.environment.tex lib/R/library/base/latex/as.function.tex lib/R/library/base/latex/assign.tex @@ -3060,9 +3090,9 @@ lib/R/library/base/latex/bindenv.tex lib/R/library/base/latex/birthday.tex lib/R/library/base/latex/body.tex lib/R/library/base/latex/box.tex -lib/R/library/base/latex/boxplot.formula.tex lib/R/library/base/latex/boxplot.stats.tex lib/R/library/base/latex/boxplot.tex +lib/R/library/base/latex/bquote.tex lib/R/library/base/latex/browseEnv.tex lib/R/library/base/latex/browseURL.tex lib/R/library/base/latex/browser.tex @@ -3101,6 +3131,7 @@ lib/R/library/base/latex/commandArgs.tex lib/R/library/base/latex/comment.tex lib/R/library/base/latex/complete.cases.tex lib/R/library/base/latex/complex.tex +lib/R/library/base/latex/conditions.tex lib/R/library/base/latex/confint.tex lib/R/library/base/latex/conflicts.tex lib/R/library/base/latex/connections.tex @@ -3126,6 +3157,7 @@ lib/R/library/base/latex/data.frame.tex lib/R/library/base/latex/data.matrix.tex lib/R/library/base/latex/data.tex lib/R/library/base/latex/dataentry.tex +lib/R/library/base/latex/dataframeHelpers.tex lib/R/library/base/latex/date.tex lib/R/library/base/latex/dcf.tex lib/R/library/base/latex/debug.tex @@ -3218,7 +3250,6 @@ lib/R/library/base/latex/getwd.tex lib/R/library/base/latex/gl.tex lib/R/library/base/latex/glm.control.tex lib/R/library/base/latex/glm.summaries.tex -lib/R/library/base/latex/glm.summary.tex lib/R/library/base/latex/glm.tex lib/R/library/base/latex/gnome.tex lib/R/library/base/latex/gray.tex @@ -3264,7 +3295,6 @@ lib/R/library/base/latex/lapply.tex lib/R/library/base/latex/layout.tex lib/R/library/base/latex/legend.tex lib/R/library/base/latex/length.tex -lib/R/library/base/latex/levels.factor.tex lib/R/library/base/latex/levels.tex lib/R/library/base/latex/library.dynam.tex lib/R/library/base/latex/library.tex @@ -3274,7 +3304,6 @@ lib/R/library/base/latex/list.files.tex lib/R/library/base/latex/list.tex lib/R/library/base/latex/lm.influence.tex lib/R/library/base/latex/lm.summaries.tex -lib/R/library/base/latex/lm.summary.tex lib/R/library/base/latex/lm.tex lib/R/library/base/latex/lmfit.tex lib/R/library/base/latex/load.tex @@ -3300,7 +3329,9 @@ lib/R/library/base/latex/make.names.tex lib/R/library/base/latex/make.packages.html.tex lib/R/library/base/latex/make.socket.tex lib/R/library/base/latex/make.tables.tex +lib/R/library/base/latex/make.unique.tex lib/R/library/base/latex/makepredictcall.tex +lib/R/library/base/latex/manglePackageName.tex lib/R/library/base/latex/manova.tex lib/R/library/base/latex/mapply.tex lib/R/library/base/latex/margin.table.tex @@ -3369,7 +3400,6 @@ lib/R/library/base/latex/package.dependencies.tex lib/R/library/base/latex/package.skeleton.tex lib/R/library/base/latex/packageStatus.tex lib/R/library/base/latex/page.tex -lib/R/library/base/latex/pairs.formula.tex lib/R/library/base/latex/pairs.tex lib/R/library/base/latex/palette.tex lib/R/library/base/latex/palettes.tex @@ -3383,6 +3413,7 @@ lib/R/library/base/latex/persp.tex lib/R/library/base/latex/phones.tex lib/R/library/base/latex/pictex.tex lib/R/library/base/latex/pie.tex +lib/R/library/base/latex/plot.dataframe.tex lib/R/library/base/latex/plot.density.tex lib/R/library/base/latex/plot.design.tex lib/R/library/base/latex/plot.lm.tex @@ -3466,9 +3497,11 @@ lib/R/library/base/latex/rivers.tex lib/R/library/base/latex/rle.tex lib/R/library/base/latex/rm.tex lib/R/library/base/latex/round.POSIXt.tex +lib/R/library/base/latex/row.names.tex lib/R/library/base/latex/row.tex lib/R/library/base/latex/rowsum.tex lib/R/library/base/latex/rug.tex +lib/R/library/base/latex/sQuote.tex lib/R/library/base/latex/sample.tex lib/R/library/base/latex/save.tex lib/R/library/base/latex/savehistory.tex @@ -3492,6 +3525,7 @@ lib/R/library/base/latex/sink.tex lib/R/library/base/latex/sleep.tex lib/R/library/base/latex/slice.index.tex lib/R/library/base/latex/slotOp.tex +lib/R/library/base/latex/socketSelect.tex lib/R/library/base/latex/solve.tex lib/R/library/base/latex/sort.tex lib/R/library/base/latex/source.tex @@ -3521,6 +3555,8 @@ lib/R/library/base/latex/substitute.tex lib/R/library/base/latex/substr.tex lib/R/library/base/latex/sum.tex lib/R/library/base/latex/summary.aov.tex +lib/R/library/base/latex/summary.glm.tex +lib/R/library/base/latex/summary.lm.tex lib/R/library/base/latex/summary.manova.tex lib/R/library/base/latex/summary.tex lib/R/library/base/latex/summaryRprof.tex @@ -3577,6 +3613,7 @@ lib/R/library/base/latex/url.show.tex lib/R/library/base/latex/uspop.tex lib/R/library/base/latex/vcov.tex lib/R/library/base/latex/vector.tex +lib/R/library/base/latex/vignette.tex lib/R/library/base/latex/volcano.tex lib/R/library/base/latex/warning.tex lib/R/library/base/latex/warnings.tex @@ -3609,6 +3646,7 @@ lib/R/library/boot/DESCRIPTION lib/R/library/boot/INDEX lib/R/library/boot/Meta/Rd.rds lib/R/library/boot/Meta/data.rds +lib/R/library/boot/Meta/hsearch.rds lib/R/library/boot/NAMESPACE lib/R/library/boot/R-ex/Imp.Estimates.R lib/R/library/boot/R-ex/abc.ci.R @@ -3636,7 +3674,6 @@ lib/R/library/boot/R-ex/tilt.boot.R lib/R/library/boot/R-ex/tsboot.R lib/R/library/boot/R-ex/var.linear.R lib/R/library/boot/R/boot -lib/R/library/boot/data/00Index lib/R/library/boot/data/acme.rda lib/R/library/boot/data/aids.rda lib/R/library/boot/data/aircondit.rda @@ -3702,8 +3739,6 @@ lib/R/library/boot/help/boot lib/R/library/boot/help/boot-practicals lib/R/library/boot/help/boot.array lib/R/library/boot/help/boot.ci -lib/R/library/boot/help/boot.object -lib/R/library/boot/help/bootci.object lib/R/library/boot/help/brambles lib/R/library/boot/help/breslow lib/R/library/boot/help/calcium @@ -3793,8 +3828,6 @@ lib/R/library/boot/html/boot-practicals.html lib/R/library/boot/html/boot.array.html lib/R/library/boot/html/boot.ci.html lib/R/library/boot/html/boot.html -lib/R/library/boot/html/boot.object.html -lib/R/library/boot/html/bootci.object.html lib/R/library/boot/html/brambles.html lib/R/library/boot/html/breslow.html lib/R/library/boot/html/calcium.html @@ -3882,9 +3915,7 @@ lib/R/library/boot/latex/bigcity.tex lib/R/library/boot/latex/boot-practicals.tex lib/R/library/boot/latex/boot.array.tex lib/R/library/boot/latex/boot.ci.tex -lib/R/library/boot/latex/boot.object.tex lib/R/library/boot/latex/boot.tex -lib/R/library/boot/latex/bootci.object.tex lib/R/library/boot/latex/brambles.tex lib/R/library/boot/latex/breslow.tex lib/R/library/boot/latex/calcium.tex @@ -3965,6 +3996,7 @@ lib/R/library/class/DESCRIPTION lib/R/library/class/INDEX lib/R/library/class/LICENCE lib/R/library/class/Meta/Rd.rds +lib/R/library/class/Meta/hsearch.rds lib/R/library/class/NAMESPACE lib/R/library/class/R-ex/SOM.R lib/R/library/class/R-ex/batchSOM.R @@ -3996,6 +4028,7 @@ lib/R/library/class/help/lvqtest lib/R/library/class/help/multiedit lib/R/library/class/help/olvq1 lib/R/library/class/help/reduce.nn +lib/R/library/class/help/somgrid lib/R/library/class/html/00Index.html lib/R/library/class/html/SOM.html lib/R/library/class/html/batchSOM.html @@ -4011,6 +4044,7 @@ lib/R/library/class/html/lvqtest.html lib/R/library/class/html/multiedit.html lib/R/library/class/html/olvq1.html lib/R/library/class/html/reduce.nn.html +lib/R/library/class/html/somgrid.html lib/R/library/class/latex/SOM.tex lib/R/library/class/latex/batchSOM.tex lib/R/library/class/latex/condense.tex @@ -4025,6 +4059,7 @@ lib/R/library/class/latex/lvqtest.tex lib/R/library/class/latex/multiedit.tex lib/R/library/class/latex/olvq1.tex lib/R/library/class/latex/reduce.nn.tex +lib/R/library/class/latex/somgrid.tex lib/R/library/class/libs/class.so lib/R/library/class/man/class.Rd lib/R/library/cluster/CONTENTS @@ -4032,6 +4067,7 @@ lib/R/library/cluster/DESCRIPTION lib/R/library/cluster/INDEX lib/R/library/cluster/Meta/Rd.rds lib/R/library/cluster/Meta/data.rds +lib/R/library/cluster/Meta/hsearch.rds lib/R/library/cluster/R-ex/agnes.R lib/R/library/cluster/R-ex/agriculture.R lib/R/library/cluster/R-ex/animals.R @@ -4061,7 +4097,6 @@ lib/R/library/cluster/R-ex/summary.agnes.R lib/R/library/cluster/R-ex/summary.clara.R lib/R/library/cluster/R-ex/volume.ellipsoid.R lib/R/library/cluster/R/cluster -lib/R/library/cluster/data/00Index lib/R/library/cluster/data/agriculture.tab lib/R/library/cluster/data/animals.tab lib/R/library/cluster/data/flower.R @@ -4236,6 +4271,7 @@ lib/R/library/ctest/CONTENTS lib/R/library/ctest/DESCRIPTION lib/R/library/ctest/INDEX lib/R/library/ctest/Meta/Rd.rds +lib/R/library/ctest/Meta/hsearch.rds lib/R/library/ctest/NAMESPACE lib/R/library/ctest/R-ex/ansari.test.R lib/R/library/ctest/R-ex/bartlett.test.R @@ -4361,6 +4397,7 @@ lib/R/library/eda/DESCRIPTION lib/R/library/eda/INDEX lib/R/library/eda/Meta/Rd.rds lib/R/library/eda/Meta/demo.rds +lib/R/library/eda/Meta/hsearch.rds lib/R/library/eda/NAMESPACE lib/R/library/eda/R-ex/line.R lib/R/library/eda/R-ex/medpolish.R @@ -4385,6 +4422,7 @@ lib/R/library/foreign/CONTENTS lib/R/library/foreign/DESCRIPTION lib/R/library/foreign/INDEX lib/R/library/foreign/Meta/Rd.rds +lib/R/library/foreign/Meta/hsearch.rds lib/R/library/foreign/R-ex/lookup.xport.R lib/R/library/foreign/R-ex/read.S.R lib/R/library/foreign/R-ex/read.dta.R @@ -4430,48 +4468,35 @@ lib/R/library/grid/CONTENTS lib/R/library/grid/DESCRIPTION lib/R/library/grid/INDEX lib/R/library/grid/Meta/Rd.rds +lib/R/library/grid/Meta/hsearch.rds +lib/R/library/grid/NAMESPACE lib/R/library/grid/R-ex/Grid.R lib/R/library/grid/R-ex/convertNative.R -lib/R/library/grid/R-ex/current.viewport.R lib/R/library/grid/R-ex/gpar.R -lib/R/library/grid/R-ex/grid.circle.R +lib/R/library/grid/R-ex/grid.arrows.R lib/R/library/grid/R-ex/grid.collection.R +lib/R/library/grid/R-ex/grid.convert.R lib/R/library/grid/R-ex/grid.copy.R lib/R/library/grid/R-ex/grid.draw.R lib/R/library/grid/R-ex/grid.edit.R lib/R/library/grid/R-ex/grid.frame.R lib/R/library/grid/R-ex/grid.get.R -lib/R/library/grid/R-ex/grid.grill.R lib/R/library/grid/R-ex/grid.grob.R lib/R/library/grid/R-ex/grid.layout.R -lib/R/library/grid/R-ex/grid.line.to.R -lib/R/library/grid/R-ex/grid.lines.R +lib/R/library/grid/R-ex/grid.locator.R lib/R/library/grid/R-ex/grid.move.to.R -lib/R/library/grid/R-ex/grid.newpage.R -lib/R/library/grid/R-ex/grid.pack.R -lib/R/library/grid/R-ex/grid.place.R lib/R/library/grid/R-ex/grid.plot.and.legend.R -lib/R/library/grid/R-ex/grid.points.R -lib/R/library/grid/R-ex/grid.polygon.R -lib/R/library/grid/R-ex/grid.rect.R -lib/R/library/grid/R-ex/grid.segments.R -lib/R/library/grid/R-ex/grid.set.R lib/R/library/grid/R-ex/grid.show.layout.R lib/R/library/grid/R-ex/grid.show.viewport.R lib/R/library/grid/R-ex/grid.text.R -lib/R/library/grid/R-ex/grid.xaxis.R -lib/R/library/grid/R-ex/grid.yaxis.R -lib/R/library/grid/R-ex/pop.viewport.R -lib/R/library/grid/R-ex/push.viewport.R lib/R/library/grid/R-ex/unit.R -lib/R/library/grid/R-ex/unit.c.R -lib/R/library/grid/R-ex/unit.length.R lib/R/library/grid/R-ex/unit.pmin.R lib/R/library/grid/R-ex/unit.rep.R lib/R/library/grid/R-ex/viewport.R lib/R/library/grid/R/grid -lib/R/library/grid/doc/changes_0.7-4.txt -lib/R/library/grid/doc/uguide_0.7-4.pdf +lib/R/library/grid/doc/changes.txt +lib/R/library/grid/doc/index.html +lib/R/library/grid/doc/uguide.pdf lib/R/library/grid/help/AnIndex lib/R/library/grid/help/Grid lib/R/library/grid/help/absolute.size @@ -4480,8 +4505,10 @@ lib/R/library/grid/help/current.viewport lib/R/library/grid/help/dataViewport lib/R/library/grid/help/gpar lib/R/library/grid/help/grid-internal +lib/R/library/grid/help/grid.arrows lib/R/library/grid/help/grid.circle lib/R/library/grid/help/grid.collection +lib/R/library/grid/help/grid.convert lib/R/library/grid/help/grid.copy lib/R/library/grid/help/grid.display.list lib/R/library/grid/help/grid.draw @@ -4491,8 +4518,8 @@ lib/R/library/grid/help/grid.get lib/R/library/grid/help/grid.grill lib/R/library/grid/help/grid.grob lib/R/library/grid/help/grid.layout -lib/R/library/grid/help/grid.line.to lib/R/library/grid/help/grid.lines +lib/R/library/grid/help/grid.locator lib/R/library/grid/help/grid.move.to lib/R/library/grid/help/grid.newpage lib/R/library/grid/help/grid.pack @@ -4528,8 +4555,10 @@ lib/R/library/grid/html/current.viewport.html lib/R/library/grid/html/dataViewport.html lib/R/library/grid/html/gpar.html lib/R/library/grid/html/grid-internal.html +lib/R/library/grid/html/grid.arrows.html lib/R/library/grid/html/grid.circle.html lib/R/library/grid/html/grid.collection.html +lib/R/library/grid/html/grid.convert.html lib/R/library/grid/html/grid.copy.html lib/R/library/grid/html/grid.display.list.html lib/R/library/grid/html/grid.draw.html @@ -4539,8 +4568,8 @@ lib/R/library/grid/html/grid.get.html lib/R/library/grid/html/grid.grill.html lib/R/library/grid/html/grid.grob.html lib/R/library/grid/html/grid.layout.html -lib/R/library/grid/html/grid.line.to.html lib/R/library/grid/html/grid.lines.html +lib/R/library/grid/html/grid.locator.html lib/R/library/grid/html/grid.move.to.html lib/R/library/grid/html/grid.newpage.html lib/R/library/grid/html/grid.pack.html @@ -4575,8 +4604,10 @@ lib/R/library/grid/latex/current.viewport.tex lib/R/library/grid/latex/dataViewport.tex lib/R/library/grid/latex/gpar.tex lib/R/library/grid/latex/grid-internal.tex +lib/R/library/grid/latex/grid.arrows.tex lib/R/library/grid/latex/grid.circle.tex lib/R/library/grid/latex/grid.collection.tex +lib/R/library/grid/latex/grid.convert.tex lib/R/library/grid/latex/grid.copy.tex lib/R/library/grid/latex/grid.display.list.tex lib/R/library/grid/latex/grid.draw.tex @@ -4586,8 +4617,8 @@ lib/R/library/grid/latex/grid.get.tex lib/R/library/grid/latex/grid.grill.tex lib/R/library/grid/latex/grid.grob.tex lib/R/library/grid/latex/grid.layout.tex -lib/R/library/grid/latex/grid.line.to.tex lib/R/library/grid/latex/grid.lines.tex +lib/R/library/grid/latex/grid.locator.tex lib/R/library/grid/latex/grid.move.to.tex lib/R/library/grid/latex/grid.newpage.tex lib/R/library/grid/latex/grid.pack.tex @@ -4624,6 +4655,8 @@ lib/R/library/lattice/INDEX lib/R/library/lattice/Meta/Rd.rds lib/R/library/lattice/Meta/data.rds lib/R/library/lattice/Meta/demo.rds +lib/R/library/lattice/Meta/hsearch.rds +lib/R/library/lattice/NAMESPACE lib/R/library/lattice/R-ex/cloud.R lib/R/library/lattice/R-ex/histogram.R lib/R/library/lattice/R-ex/levelplot.R @@ -4639,7 +4672,6 @@ lib/R/library/lattice/R-ex/tmd.R lib/R/library/lattice/R-ex/trellis.par.get.R lib/R/library/lattice/R-ex/xyplot.R lib/R/library/lattice/R/lattice -lib/R/library/lattice/data/00Index lib/R/library/lattice/data/barley.R lib/R/library/lattice/data/environmental.R lib/R/library/lattice/data/ethanol.R @@ -4650,12 +4682,12 @@ lib/R/library/lattice/demo/00Index lib/R/library/lattice/demo/lattice.R lib/R/library/lattice/help/AnIndex lib/R/library/lattice/help/Lattice +lib/R/library/lattice/help/Rows lib/R/library/lattice/help/banking lib/R/library/lattice/help/cloud lib/R/library/lattice/help/draw.colorkey lib/R/library/lattice/help/draw.key lib/R/library/lattice/help/histogram -lib/R/library/lattice/help/lattice-internal lib/R/library/lattice/help/latticeParseFormula lib/R/library/lattice/help/levelplot lib/R/library/lattice/help/llines @@ -4694,12 +4726,12 @@ lib/R/library/lattice/help/update.trellis lib/R/library/lattice/help/xyplot lib/R/library/lattice/html/00Index.html lib/R/library/lattice/html/Lattice.html +lib/R/library/lattice/html/Rows.html lib/R/library/lattice/html/banking.html lib/R/library/lattice/html/cloud.html lib/R/library/lattice/html/draw.colorkey.html lib/R/library/lattice/html/draw.key.html lib/R/library/lattice/html/histogram.html -lib/R/library/lattice/html/lattice-internal.html lib/R/library/lattice/html/latticeParseFormula.html lib/R/library/lattice/html/levelplot.html lib/R/library/lattice/html/llines.html @@ -4737,12 +4769,12 @@ lib/R/library/lattice/html/trellis.par.get.html lib/R/library/lattice/html/update.trellis.html lib/R/library/lattice/html/xyplot.html lib/R/library/lattice/latex/Lattice.tex +lib/R/library/lattice/latex/Rows.tex lib/R/library/lattice/latex/banking.tex lib/R/library/lattice/latex/cloud.tex lib/R/library/lattice/latex/draw.colorkey.tex lib/R/library/lattice/latex/draw.key.tex lib/R/library/lattice/latex/histogram.tex -lib/R/library/lattice/latex/lattice-internal.tex lib/R/library/lattice/latex/latticeParseFormula.tex lib/R/library/lattice/latex/levelplot.tex lib/R/library/lattice/latex/llines.tex @@ -4785,6 +4817,7 @@ lib/R/library/lqs/CONTENTS lib/R/library/lqs/DESCRIPTION lib/R/library/lqs/INDEX lib/R/library/lqs/Meta/Rd.rds +lib/R/library/lqs/Meta/hsearch.rds lib/R/library/lqs/NAMESPACE lib/R/library/lqs/R-ex/cov.rob.R lib/R/library/lqs/R-ex/lqs.R @@ -4807,10 +4840,13 @@ lib/R/library/methods/CONTENTS lib/R/library/methods/DESCRIPTION lib/R/library/methods/INDEX lib/R/library/methods/Meta/Rd.rds +lib/R/library/methods/Meta/hsearch.rds +lib/R/library/methods/NAMESPACE lib/R/library/methods/R-ex/GenericFunctions.R lib/R/library/methods/R-ex/NextMethod.R lib/R/library/methods/R-ex/as.R lib/R/library/methods/R-ex/getClass.R +lib/R/library/methods/R-ex/getMethod.R lib/R/library/methods/R-ex/getPackageName.R lib/R/library/methods/R-ex/hasArg.R lib/R/library/methods/R-ex/is.R @@ -4819,6 +4855,7 @@ lib/R/library/methods/R-ex/new.R lib/R/library/methods/R-ex/promptClass.R lib/R/library/methods/R-ex/representation.R lib/R/library/methods/R-ex/setClass.R +lib/R/library/methods/R-ex/setClassUnion.R lib/R/library/methods/R-ex/setGeneric.R lib/R/library/methods/R-ex/setMethod.R lib/R/library/methods/R-ex/setOldClass.R @@ -4831,6 +4868,7 @@ lib/R/library/methods/R/methods lib/R/library/methods/help/AnIndex lib/R/library/methods/help/BasicClasses lib/R/library/methods/help/Classes +lib/R/library/methods/help/Documentation lib/R/library/methods/help/EmptyMethodsList-class lib/R/library/methods/help/EnvironmentClass lib/R/library/methods/help/GenericFunctions @@ -4857,15 +4895,18 @@ lib/R/library/methods/help/getClass lib/R/library/methods/help/getMethod lib/R/library/methods/help/getPackageName lib/R/library/methods/help/hasArg +lib/R/library/methods/help/initialize-methods lib/R/library/methods/help/is lib/R/library/methods/help/isSealedMethod lib/R/library/methods/help/languageEl lib/R/library/methods/help/methodUtilities lib/R/library/methods/help/new +lib/R/library/methods/help/oldGet lib/R/library/methods/help/promptClass lib/R/library/methods/help/promptMethods lib/R/library/methods/help/representation lib/R/library/methods/help/setClass +lib/R/library/methods/help/setClassUnion lib/R/library/methods/help/setGeneric lib/R/library/methods/help/setMethod lib/R/library/methods/help/setOldClass @@ -4880,6 +4921,7 @@ lib/R/library/methods/help/zBasicFunsList lib/R/library/methods/html/00Index.html lib/R/library/methods/html/BasicClasses.html lib/R/library/methods/html/Classes.html +lib/R/library/methods/html/Documentation.html lib/R/library/methods/html/EmptyMethodsList-class.html lib/R/library/methods/html/EnvironmentClass.html lib/R/library/methods/html/GenericFunctions.html @@ -4906,15 +4948,18 @@ lib/R/library/methods/html/getClass.html lib/R/library/methods/html/getMethod.html lib/R/library/methods/html/getPackageName.html lib/R/library/methods/html/hasArg.html +lib/R/library/methods/html/initialize-methods.html lib/R/library/methods/html/is.html lib/R/library/methods/html/isSealedMethod.html lib/R/library/methods/html/languageEl.html lib/R/library/methods/html/methodUtilities.html lib/R/library/methods/html/new.html +lib/R/library/methods/html/oldGet.html lib/R/library/methods/html/promptClass.html lib/R/library/methods/html/promptMethods.html lib/R/library/methods/html/representation.html lib/R/library/methods/html/setClass.html +lib/R/library/methods/html/setClassUnion.html lib/R/library/methods/html/setGeneric.html lib/R/library/methods/html/setMethod.html lib/R/library/methods/html/setOldClass.html @@ -4928,6 +4973,7 @@ lib/R/library/methods/html/validObject.html lib/R/library/methods/html/zBasicFunsList.html lib/R/library/methods/latex/BasicClasses.tex lib/R/library/methods/latex/Classes.tex +lib/R/library/methods/latex/Documentation.tex lib/R/library/methods/latex/EmptyMethodsList-class.tex lib/R/library/methods/latex/EnvironmentClass.tex lib/R/library/methods/latex/GenericFunctions.tex @@ -4954,15 +5000,18 @@ lib/R/library/methods/latex/getClass.tex lib/R/library/methods/latex/getMethod.tex lib/R/library/methods/latex/getPackageName.tex lib/R/library/methods/latex/hasArg.tex +lib/R/library/methods/latex/initialize-methods.tex lib/R/library/methods/latex/is.tex lib/R/library/methods/latex/isSealedMethod.tex lib/R/library/methods/latex/languageEl.tex lib/R/library/methods/latex/methodUtilities.tex lib/R/library/methods/latex/new.tex +lib/R/library/methods/latex/oldGet.tex lib/R/library/methods/latex/promptClass.tex lib/R/library/methods/latex/promptMethods.tex lib/R/library/methods/latex/representation.tex lib/R/library/methods/latex/setClass.tex +lib/R/library/methods/latex/setClassUnion.tex lib/R/library/methods/latex/setGeneric.tex lib/R/library/methods/latex/setMethod.tex lib/R/library/methods/latex/setOldClass.tex @@ -4980,114 +5029,164 @@ lib/R/library/mgcv/CONTENTS lib/R/library/mgcv/DESCRIPTION lib/R/library/mgcv/INDEX lib/R/library/mgcv/Meta/Rd.rds +lib/R/library/mgcv/Meta/hsearch.rds lib/R/library/mgcv/R-ex/GAMsetup.R lib/R/library/mgcv/R-ex/QT.R +lib/R/library/mgcv/R-ex/exclude.too.far.R lib/R/library/mgcv/R-ex/gam.R lib/R/library/mgcv/R-ex/gam.check.R lib/R/library/mgcv/R-ex/gam.models.R +lib/R/library/mgcv/R-ex/gam.neg.bin.R lib/R/library/mgcv/R-ex/gam.side.conditions.R lib/R/library/mgcv/R-ex/mgcv.R lib/R/library/mgcv/R-ex/mono.con.R lib/R/library/mgcv/R-ex/null.space.dimension.R lib/R/library/mgcv/R-ex/pcls.R -lib/R/library/mgcv/R-ex/persp.gam.R lib/R/library/mgcv/R-ex/plot.gam.R lib/R/library/mgcv/R-ex/predict.gam.R lib/R/library/mgcv/R-ex/s.R lib/R/library/mgcv/R-ex/summary.gam.R lib/R/library/mgcv/R-ex/uniquecombs.R +lib/R/library/mgcv/R-ex/vis.gam.R lib/R/library/mgcv/R/mgcv lib/R/library/mgcv/help/AnIndex lib/R/library/mgcv/help/GAMsetup lib/R/library/mgcv/help/QT +lib/R/library/mgcv/help/exclude.too.far +lib/R/library/mgcv/help/full.score lib/R/library/mgcv/help/gam lib/R/library/mgcv/help/gam.check lib/R/library/mgcv/help/gam.control lib/R/library/mgcv/help/gam.fit lib/R/library/mgcv/help/gam.models -lib/R/library/mgcv/help/gam.nbut +lib/R/library/mgcv/help/gam.neg.bin lib/R/library/mgcv/help/gam.parser lib/R/library/mgcv/help/gam.selection lib/R/library/mgcv/help/gam.setup lib/R/library/mgcv/help/gam.side.conditions -lib/R/library/mgcv/help/get.family +lib/R/library/mgcv/help/magic +lib/R/library/mgcv/help/magic.post.proc lib/R/library/mgcv/help/mgcv lib/R/library/mgcv/help/mono.con -lib/R/library/mgcv/help/neg.binom +lib/R/library/mgcv/help/mroot lib/R/library/mgcv/help/null.space.dimension lib/R/library/mgcv/help/pcls -lib/R/library/mgcv/help/persp.gam lib/R/library/mgcv/help/plot.gam lib/R/library/mgcv/help/predict.gam lib/R/library/mgcv/help/print.gam lib/R/library/mgcv/help/residuals.gam lib/R/library/mgcv/help/s lib/R/library/mgcv/help/summary.gam -lib/R/library/mgcv/help/theta.maxl lib/R/library/mgcv/help/uniquecombs +lib/R/library/mgcv/help/vis.gam lib/R/library/mgcv/html/00Index.html lib/R/library/mgcv/html/GAMsetup.html lib/R/library/mgcv/html/QT.html +lib/R/library/mgcv/html/exclude.too.far.html +lib/R/library/mgcv/html/full.score.html lib/R/library/mgcv/html/gam.check.html lib/R/library/mgcv/html/gam.control.html lib/R/library/mgcv/html/gam.fit.html lib/R/library/mgcv/html/gam.html lib/R/library/mgcv/html/gam.models.html -lib/R/library/mgcv/html/gam.nbut.html +lib/R/library/mgcv/html/gam.neg.bin.html lib/R/library/mgcv/html/gam.parser.html lib/R/library/mgcv/html/gam.selection.html lib/R/library/mgcv/html/gam.setup.html lib/R/library/mgcv/html/gam.side.conditions.html -lib/R/library/mgcv/html/get.family.html +lib/R/library/mgcv/html/magic.html +lib/R/library/mgcv/html/magic.post.proc.html lib/R/library/mgcv/html/mgcv.html lib/R/library/mgcv/html/mono.con.html -lib/R/library/mgcv/html/neg.binom.html +lib/R/library/mgcv/html/mroot.html lib/R/library/mgcv/html/null.space.dimension.html lib/R/library/mgcv/html/pcls.html -lib/R/library/mgcv/html/persp.gam.html lib/R/library/mgcv/html/plot.gam.html lib/R/library/mgcv/html/predict.gam.html lib/R/library/mgcv/html/print.gam.html lib/R/library/mgcv/html/residuals.gam.html lib/R/library/mgcv/html/s.html lib/R/library/mgcv/html/summary.gam.html -lib/R/library/mgcv/html/theta.maxl.html lib/R/library/mgcv/html/uniquecombs.html +lib/R/library/mgcv/html/vis.gam.html lib/R/library/mgcv/latex/GAMsetup.tex lib/R/library/mgcv/latex/QT.tex +lib/R/library/mgcv/latex/exclude.too.far.tex +lib/R/library/mgcv/latex/full.score.tex lib/R/library/mgcv/latex/gam.check.tex lib/R/library/mgcv/latex/gam.control.tex lib/R/library/mgcv/latex/gam.fit.tex lib/R/library/mgcv/latex/gam.models.tex -lib/R/library/mgcv/latex/gam.nbut.tex +lib/R/library/mgcv/latex/gam.neg.bin.tex lib/R/library/mgcv/latex/gam.parser.tex lib/R/library/mgcv/latex/gam.selection.tex lib/R/library/mgcv/latex/gam.setup.tex lib/R/library/mgcv/latex/gam.side.conditions.tex lib/R/library/mgcv/latex/gam.tex -lib/R/library/mgcv/latex/get.family.tex +lib/R/library/mgcv/latex/magic.post.proc.tex +lib/R/library/mgcv/latex/magic.tex lib/R/library/mgcv/latex/mgcv.tex lib/R/library/mgcv/latex/mono.con.tex -lib/R/library/mgcv/latex/neg.binom.tex +lib/R/library/mgcv/latex/mroot.tex lib/R/library/mgcv/latex/null.space.dimension.tex lib/R/library/mgcv/latex/pcls.tex -lib/R/library/mgcv/latex/persp.gam.tex lib/R/library/mgcv/latex/plot.gam.tex lib/R/library/mgcv/latex/predict.gam.tex lib/R/library/mgcv/latex/print.gam.tex lib/R/library/mgcv/latex/residuals.gam.tex lib/R/library/mgcv/latex/s.tex lib/R/library/mgcv/latex/summary.gam.tex -lib/R/library/mgcv/latex/theta.maxl.tex lib/R/library/mgcv/latex/uniquecombs.tex +lib/R/library/mgcv/latex/vis.gam.tex lib/R/library/mgcv/libs/mgcv.so lib/R/library/mgcv/man/mgcv.Rd +lib/R/library/mle/CONTENTS +lib/R/library/mle/DESCRIPTION +lib/R/library/mle/INDEX +lib/R/library/mle/Meta/Rd.rds +lib/R/library/mle/Meta/hsearch.rds +lib/R/library/mle/NAMESPACE +lib/R/library/mle/R-ex/mle.R +lib/R/library/mle/R-ex/summary.mle-class.R +lib/R/library/mle/R/all.rda +lib/R/library/mle/R/mle +lib/R/library/mle/help/AnIndex +lib/R/library/mle/help/confint-methods +lib/R/library/mle/help/mle +lib/R/library/mle/help/mle-class +lib/R/library/mle/help/plot-methods +lib/R/library/mle/help/profile-methods +lib/R/library/mle/help/profile.mle-class +lib/R/library/mle/help/show-methods +lib/R/library/mle/help/summary-methods +lib/R/library/mle/help/summary.mle-class +lib/R/library/mle/html/00Index.html +lib/R/library/mle/html/confint-methods.html +lib/R/library/mle/html/mle-class.html +lib/R/library/mle/html/mle.html +lib/R/library/mle/html/plot-methods.html +lib/R/library/mle/html/profile-methods.html +lib/R/library/mle/html/profile.mle-class.html +lib/R/library/mle/html/show-methods.html +lib/R/library/mle/html/summary-methods.html +lib/R/library/mle/html/summary.mle-class.html +lib/R/library/mle/latex/confint-methods.tex +lib/R/library/mle/latex/mle-class.tex +lib/R/library/mle/latex/mle.tex +lib/R/library/mle/latex/plot-methods.tex +lib/R/library/mle/latex/profile-methods.tex +lib/R/library/mle/latex/profile.mle-class.tex +lib/R/library/mle/latex/show-methods.tex +lib/R/library/mle/latex/summary-methods.tex +lib/R/library/mle/latex/summary.mle-class.tex +lib/R/library/mle/man/mle.Rd lib/R/library/modreg/CONTENTS lib/R/library/modreg/COPYRIGHTS lib/R/library/modreg/DESCRIPTION lib/R/library/modreg/INDEX lib/R/library/modreg/Meta/Rd.rds lib/R/library/modreg/Meta/data.rds +lib/R/library/modreg/Meta/hsearch.rds lib/R/library/modreg/NAMESPACE lib/R/library/modreg/R-ex/isoreg.R lib/R/library/modreg/R-ex/ksmooth.R @@ -5158,6 +5257,7 @@ lib/R/library/mva/DESCRIPTION lib/R/library/mva/INDEX lib/R/library/mva/Meta/Rd.rds lib/R/library/mva/Meta/data.rds +lib/R/library/mva/Meta/hsearch.rds lib/R/library/mva/NAMESPACE lib/R/library/mva/R-ex/Harman23.cor.R lib/R/library/mva/R-ex/Harman74.cor.R @@ -5275,6 +5375,7 @@ lib/R/library/nlme/DESCRIPTION lib/R/library/nlme/INDEX lib/R/library/nlme/Meta/Rd.rds lib/R/library/nlme/Meta/data.rds +lib/R/library/nlme/Meta/hsearch.rds lib/R/library/nlme/NAMESPACE lib/R/library/nlme/R-ex/ACF.R lib/R/library/nlme/R-ex/ACF.gls.R @@ -5533,7 +5634,6 @@ lib/R/library/nlme/R-ex/varIdent.R lib/R/library/nlme/R-ex/varPower.R lib/R/library/nlme/R-ex/varWeights.R lib/R/library/nlme/R/nlme -lib/R/library/nlme/data/00Index lib/R/library/nlme/data/Alfalfa.rda lib/R/library/nlme/data/Assay.rda lib/R/library/nlme/data/BodyWeight.rda @@ -6456,6 +6556,7 @@ lib/R/library/nls/DESCRIPTION lib/R/library/nls/INDEX lib/R/library/nls/Meta/Rd.rds lib/R/library/nls/Meta/data.rds +lib/R/library/nls/Meta/hsearch.rds lib/R/library/nls/NAMESPACE lib/R/library/nls/R-ex/BOD.R lib/R/library/nls/R-ex/CO2.R @@ -6494,8 +6595,6 @@ lib/R/library/nls/R-ex/profile.nls.R lib/R/library/nls/R-ex/profiler.R lib/R/library/nls/R-ex/profiler.nls.R lib/R/library/nls/R-ex/selfStart.R -lib/R/library/nls/R-ex/selfStart.default.R -lib/R/library/nls/R-ex/selfStart.formula.R lib/R/library/nls/R-ex/setNames.R lib/R/library/nls/R-ex/sortedXyData.R lib/R/library/nls/R/nls @@ -6546,8 +6645,6 @@ lib/R/library/nls/help/profile.nls lib/R/library/nls/help/profiler lib/R/library/nls/help/profiler.nls lib/R/library/nls/help/selfStart -lib/R/library/nls/help/selfStart.default -lib/R/library/nls/help/selfStart.formula lib/R/library/nls/help/setNames lib/R/library/nls/help/sortedXyData lib/R/library/nls/html/00Index.html @@ -6587,8 +6684,6 @@ lib/R/library/nls/html/predict.nls.html lib/R/library/nls/html/profile.nls.html lib/R/library/nls/html/profiler.html lib/R/library/nls/html/profiler.nls.html -lib/R/library/nls/html/selfStart.default.html -lib/R/library/nls/html/selfStart.formula.html lib/R/library/nls/html/selfStart.html lib/R/library/nls/html/setNames.html lib/R/library/nls/html/sortedXyData.html @@ -6628,8 +6723,6 @@ lib/R/library/nls/latex/predict.nls.tex lib/R/library/nls/latex/profile.nls.tex lib/R/library/nls/latex/profiler.nls.tex lib/R/library/nls/latex/profiler.tex -lib/R/library/nls/latex/selfStart.default.tex -lib/R/library/nls/latex/selfStart.formula.tex lib/R/library/nls/latex/selfStart.tex lib/R/library/nls/latex/setNames.tex lib/R/library/nls/latex/sortedXyData.tex @@ -6640,6 +6733,7 @@ lib/R/library/nnet/DESCRIPTION lib/R/library/nnet/INDEX lib/R/library/nnet/LICENCE lib/R/library/nnet/Meta/Rd.rds +lib/R/library/nnet/Meta/hsearch.rds lib/R/library/nnet/NAMESPACE lib/R/library/nnet/R-ex/class.ind.R lib/R/library/nnet/R-ex/multinom.R @@ -6675,6 +6769,7 @@ lib/R/library/rpart/DESCRIPTION lib/R/library/rpart/INDEX lib/R/library/rpart/Meta/Rd.rds lib/R/library/rpart/Meta/data.rds +lib/R/library/rpart/Meta/hsearch.rds lib/R/library/rpart/NAMESPACE lib/R/library/rpart/R-ex/car.test.frame.R lib/R/library/rpart/R-ex/cu.summary.R @@ -6696,7 +6791,6 @@ lib/R/library/rpart/R-ex/summary.rpart.R lib/R/library/rpart/R-ex/text.rpart.R lib/R/library/rpart/R-ex/xpred.rpart.R lib/R/library/rpart/R/rpart -lib/R/library/rpart/data/00Index lib/R/library/rpart/data/car.test.frame.csv lib/R/library/rpart/data/cu.summary.rda lib/R/library/rpart/data/kyphosis.tab @@ -6718,13 +6812,9 @@ lib/R/library/rpart/help/printcp lib/R/library/rpart/help/prune.rpart lib/R/library/rpart/help/residuals.rpart lib/R/library/rpart/help/rpart -lib/R/library/rpart/help/rpart.anova -lib/R/library/rpart/help/rpart.class +lib/R/library/rpart/help/rpart-internal lib/R/library/rpart/help/rpart.control -lib/R/library/rpart/help/rpart.exp -lib/R/library/rpart/help/rpart.matrix lib/R/library/rpart/help/rpart.object -lib/R/library/rpart/help/rpart.poisson lib/R/library/rpart/help/rpconvert lib/R/library/rpart/help/rsq.rpart lib/R/library/rpart/help/snip.rpart @@ -6748,14 +6838,10 @@ lib/R/library/rpart/html/print.rpart.html lib/R/library/rpart/html/printcp.html lib/R/library/rpart/html/prune.rpart.html lib/R/library/rpart/html/residuals.rpart.html -lib/R/library/rpart/html/rpart.anova.html -lib/R/library/rpart/html/rpart.class.html +lib/R/library/rpart/html/rpart-internal.html lib/R/library/rpart/html/rpart.control.html -lib/R/library/rpart/html/rpart.exp.html lib/R/library/rpart/html/rpart.html -lib/R/library/rpart/html/rpart.matrix.html lib/R/library/rpart/html/rpart.object.html -lib/R/library/rpart/html/rpart.poisson.html lib/R/library/rpart/html/rpconvert.html lib/R/library/rpart/html/rsq.rpart.html lib/R/library/rpart/html/snip.rpart.html @@ -6778,13 +6864,9 @@ lib/R/library/rpart/latex/print.rpart.tex lib/R/library/rpart/latex/printcp.tex lib/R/library/rpart/latex/prune.rpart.tex lib/R/library/rpart/latex/residuals.rpart.tex -lib/R/library/rpart/latex/rpart.anova.tex -lib/R/library/rpart/latex/rpart.class.tex +lib/R/library/rpart/latex/rpart-internal.tex lib/R/library/rpart/latex/rpart.control.tex -lib/R/library/rpart/latex/rpart.exp.tex -lib/R/library/rpart/latex/rpart.matrix.tex lib/R/library/rpart/latex/rpart.object.tex -lib/R/library/rpart/latex/rpart.poisson.tex lib/R/library/rpart/latex/rpart.tex lib/R/library/rpart/latex/rpconvert.tex lib/R/library/rpart/latex/rsq.rpart.tex @@ -6800,6 +6882,7 @@ lib/R/library/spatial/DESCRIPTION lib/R/library/spatial/INDEX lib/R/library/spatial/LICENCE lib/R/library/spatial/Meta/Rd.rds +lib/R/library/spatial/Meta/hsearch.rds lib/R/library/spatial/NAMESPACE lib/R/library/spatial/PP.files lib/R/library/spatial/R-ex/Kaver.R @@ -6917,6 +7000,7 @@ lib/R/library/splines/CONTENTS lib/R/library/splines/DESCRIPTION lib/R/library/splines/INDEX lib/R/library/splines/Meta/Rd.rds +lib/R/library/splines/Meta/hsearch.rds lib/R/library/splines/NAMESPACE lib/R/library/splines/R-ex/asVector.R lib/R/library/splines/R-ex/backSpline.R @@ -6979,6 +7063,7 @@ lib/R/library/stepfun/CONTENTS lib/R/library/stepfun/DESCRIPTION lib/R/library/stepfun/INDEX lib/R/library/stepfun/Meta/Rd.rds +lib/R/library/stepfun/Meta/hsearch.rds lib/R/library/stepfun/NAMESPACE lib/R/library/stepfun/R-ex/ecdf.R lib/R/library/stepfun/R-ex/plot.stepfun.R @@ -7002,6 +7087,7 @@ lib/R/library/survival/DESCRIPTION lib/R/library/survival/INDEX lib/R/library/survival/Meta/Rd.rds lib/R/library/survival/Meta/data.rds +lib/R/library/survival/Meta/hsearch.rds lib/R/library/survival/R-ex/Surv.R lib/R/library/survival/R-ex/anova.coxph.R lib/R/library/survival/R-ex/as.date.R @@ -7043,6 +7129,7 @@ lib/R/library/survival/R-ex/survreg.control.R lib/R/library/survival/R-ex/survreg.distributions.R lib/R/library/survival/R-ex/survreg.old.R lib/R/library/survival/R-ex/tcut.R +lib/R/library/survival/R-ex/tobin.R lib/R/library/survival/R-ex/untangle.specials.R lib/R/library/survival/R/survival lib/R/library/survival/data/aml.rda @@ -7058,6 +7145,7 @@ lib/R/library/survival/data/pbc.rda lib/R/library/survival/data/ratetables.rda lib/R/library/survival/data/rats.rda lib/R/library/survival/data/stanford2.rda +lib/R/library/survival/data/tobin.txt lib/R/library/survival/data/veteran.rda lib/R/library/survival/help/AnIndex lib/R/library/survival/help/Surv @@ -7117,6 +7205,7 @@ lib/R/library/survival/help/survreg.distributions lib/R/library/survival/help/survreg.object lib/R/library/survival/help/survreg.old lib/R/library/survival/help/tcut +lib/R/library/survival/help/tobin lib/R/library/survival/help/untangle.specials lib/R/library/survival/help/veteran lib/R/library/survival/html/00Index.html @@ -7177,6 +7266,7 @@ lib/R/library/survival/html/survreg.html lib/R/library/survival/html/survreg.object.html lib/R/library/survival/html/survreg.old.html lib/R/library/survival/html/tcut.html +lib/R/library/survival/html/tobin.html lib/R/library/survival/html/untangle.specials.html lib/R/library/survival/html/veteran.html lib/R/library/survival/latex/Surv.tex @@ -7236,6 +7326,7 @@ lib/R/library/survival/latex/survreg.object.tex lib/R/library/survival/latex/survreg.old.tex lib/R/library/survival/latex/survreg.tex lib/R/library/survival/latex/tcut.tex +lib/R/library/survival/latex/tobin.tex lib/R/library/survival/latex/untangle.specials.tex lib/R/library/survival/latex/veteran.tex lib/R/library/survival/libs/survival.so @@ -7246,11 +7337,12 @@ lib/R/library/tcltk/DESCRIPTION lib/R/library/tcltk/INDEX lib/R/library/tcltk/Meta/Rd.rds lib/R/library/tcltk/Meta/demo.rds +lib/R/library/tcltk/Meta/hsearch.rds +lib/R/library/tcltk/NAMESPACE lib/R/library/tcltk/R-ex/TclInterface.R lib/R/library/tcltk/R-ex/TkCommands.R lib/R/library/tcltk/R-ex/TkWidgetcmds.R lib/R/library/tcltk/R-ex/TkWidgets.R -lib/R/library/tcltk/R-ex/tkpager.R lib/R/library/tcltk/R/tcltk lib/R/library/tcltk/demo/00Index lib/R/library/tcltk/demo/tkcanvas.R @@ -7295,10 +7387,13 @@ lib/R/library/tools/CONTENTS lib/R/library/tools/DESCRIPTION lib/R/library/tools/INDEX lib/R/library/tools/Meta/Rd.rds +lib/R/library/tools/Meta/hsearch.rds lib/R/library/tools/NAMESPACE lib/R/library/tools/R-ex/Sweave.R lib/R/library/tools/R-ex/SweaveSyntConv.R lib/R/library/tools/R-ex/checkFF.R +lib/R/library/tools/R-ex/delimMatch.R +lib/R/library/tools/R-ex/fileutils.R lib/R/library/tools/R-ex/md5sum.R lib/R/library/tools/R-ex/undoc.R lib/R/library/tools/R/tools @@ -7315,6 +7410,8 @@ lib/R/library/tools/help/checkMD5sums lib/R/library/tools/help/checkTnF lib/R/library/tools/help/checkVignettes lib/R/library/tools/help/codoc +lib/R/library/tools/help/delimMatch +lib/R/library/tools/help/fileutils lib/R/library/tools/help/md5sum lib/R/library/tools/help/tools-internal lib/R/library/tools/help/undoc @@ -7330,6 +7427,8 @@ lib/R/library/tools/html/checkMD5sums.html lib/R/library/tools/html/checkTnF.html lib/R/library/tools/html/checkVignettes.html lib/R/library/tools/html/codoc.html +lib/R/library/tools/html/delimMatch.html +lib/R/library/tools/html/fileutils.html lib/R/library/tools/html/md5sum.html lib/R/library/tools/html/tools-internal.html lib/R/library/tools/html/undoc.html @@ -7344,6 +7443,8 @@ lib/R/library/tools/latex/checkMD5sums.tex lib/R/library/tools/latex/checkTnF.tex lib/R/library/tools/latex/checkVignettes.tex lib/R/library/tools/latex/codoc.tex +lib/R/library/tools/latex/delimMatch.tex +lib/R/library/tools/latex/fileutils.tex lib/R/library/tools/latex/md5sum.tex lib/R/library/tools/latex/tools-internal.tex lib/R/library/tools/latex/undoc.tex @@ -7354,6 +7455,7 @@ lib/R/library/ts/DESCRIPTION lib/R/library/ts/INDEX lib/R/library/ts/Meta/Rd.rds lib/R/library/ts/Meta/data.rds +lib/R/library/ts/Meta/hsearch.rds lib/R/library/ts/NAMESPACE lib/R/library/ts/R-ex/ARMAacf.R lib/R/library/ts/R-ex/ARMAtoMA.R @@ -7610,9 +7712,11 @@ lib/R/modules/internet.so lib/R/modules/lapack.so lib/R/modules/vfonts.so lib/R/share/R/firstlib.R +lib/R/share/R/nsrdaload.R lib/R/share/make/config.mk lib/R/share/make/shlib.mk lib/R/share/make/tests.mk +lib/R/share/make/vars.mk lib/R/share/perl/R/Dcf.pm lib/R/share/perl/R/Logfile.pm lib/R/share/perl/R/Rd.pm @@ -7623,7 +7727,6 @@ lib/R/share/perl/R/Utils.pm lib/R/share/perl/R/Vars.pm lib/R/share/perl/Rd2contents.pl lib/R/share/perl/Text/DelimMatch.pm -lib/R/share/perl/build-help-mac.pl lib/R/share/perl/build-help-windows.pl lib/R/share/perl/build-help.pl lib/R/share/perl/extract-examples.pl @@ -7642,6 +7745,7 @@ lib/R/share/texmf/hyperref.cfg lib/R/share/texmf/omsaer.fd lib/R/share/texmf/omsaett.fd lib/R/share/texmf/omscmtt.fd +lib/R/share/texmf/upquote.sty @dirrm lib/R/share/texmf @dirrm lib/R/share/sh @dirrm lib/R/share/perl/Text @@ -7780,6 +7884,14 @@ lib/R/share/texmf/omscmtt.fd @dirrm lib/R/library/modreg/R @dirrm lib/R/library/modreg/Meta @dirrm lib/R/library/modreg +@dirrm lib/R/library/mle/man +@dirrm lib/R/library/mle/latex +@dirrm lib/R/library/mle/html +@dirrm lib/R/library/mle/help +@dirrm lib/R/library/mle/R-ex +@dirrm lib/R/library/mle/R +@dirrm lib/R/library/mle/Meta +@dirrm lib/R/library/mle @dirrm lib/R/library/mgcv/man @dirrm lib/R/library/mgcv/libs @dirrm lib/R/library/mgcv/latex