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776 Commits

Author SHA1 Message Date
Pav Lucistnik
7dc0abbf54 - Remove expired ports 2006-01-14 21:16:35 +00:00
Pav Lucistnik
52e61d2411 - Update to 2.0.20060101 
PR:		ports/91715
Submitted by:	Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
 2006-01-14 19:36:19 +00:00
Pav Lucistnik
5825fa4ce6 - Update to 2005.12.06 
PR:		ports/91714
Submitted by:	Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
 2006-01-14 19:34:43 +00:00
Pav Lucistnik
366702a54e - Chase openbabel update 2006-01-14 12:43:12 +00:00
Kris Kennaway
314f18d79c BROKEN: Broken dependency 2006-01-14 09:38:11 +00:00
Sergey Matveychuk
b4d2ac42d7 - Update graphics/libglut to 6.4.1. 
- Shared lib version and PORTREVISION bumb for all affected ports.

While I'm here:
- Remove USE_MESA knob where it was (35 ports).
  It marked as depricated for 2 years.

PR:		ports/90247
Submitted by:	Ermal Lu?i <eri--@albabsd.org>
 2006-01-12 12:54:32 +00:00
Edwin Groothuis
8a256d14e0 Fix maintainer address 
From: Tony Maher <anthony.maher@uts.edu.au>
    To: Edwin Groothuis <edwin@FreeBSD.org>
    Subject: Re: ports/91537: maths/xgobi - download site moved/maintainer addressupdate

    Actually I need  modify all my ports to use OptusNet rather than
    Biolateral.  Is there an easy way to do this or should I submit a
    separate 1-line patch and PR for each port?

    biology/crimap
    biology/dna-qc
    biology/flip
    biology/primer3
    biology/seqio
    biology/wise
    math/xgobi
    net/generic-nqs

Submitted by:	Tony Maher <anthony.maher@uts.edu.au>
 2006-01-09 03:25:03 +00:00
Trevor Johnson
f449b89dca Hash with SHA-256. 2006-01-07 20:00:08 +00:00
Pav Lucistnik
3527239417 - Remove symlinks that belong to mtree 
Approved by:	maintainers
 2006-01-05 22:31:12 +00:00
Edwin Groothuis
4e74668975 possible fix to unbreak biology/L-Breeder 
L-Breeder is currently marked unfetchable:
	http://people.freebsd.org/~fenner/portsurvey/biology.html#L-Breeder

	So I tried to investigate the problem and I'm now submitting
	my homework so it doesn't get lost.

	This is what I noticed:

	i) L-Breeder upstream sources have "stagnated for some time,
	but now a new simplified version is available" (sic, from
	the web site)

	So, the fetch issue is resolved. And the pkg-descr is also
	updated to reflect the new home page. However:

	ii) L-Breeder is now called LBreeder. I have changed PORTNAME
	to reflect this, although I don't know if this is the right
	thing to do. Should the port be moved to biology/LBreeder?
	Or perhaps just leaving PORTNAME pointing to the old name
	and then work inside the Makefile to point the build/install
	to the correct name?

	iii) the sources have been reorganized so I have to update
	the port's Makefile to reflect this. The attached patch
	works for me under FreeBSD-4.11 (although it's possible
	that I may have missed a dependency if I already have a
	required library installed in my box. Sorry, I don't have
	a tinderbox-like setup to test builds)

	iv) the program does not have a version number, nor did I
	find one by looking inside the sources. To avoid changing
	too much the port I just left PORTVERSION at 1.0 and bumped
	PORTREVISION to 6

	Finally, do note that I am not a user of LBreeder, so I
	cannot test the program myself. I just noticed that by
	calling the executable I get a black X screen, that I can
	quit by pressing 'q' as documented in Readme.txt, but I
	can't tell myself if this is the expected behaviour. Nor
	do I know how to use the example files. Caveat emptor.

PR:		ports/90073
Submitted by:	Fernan Aguero <fernan@iib.unsam.edu.ar>
Approved by:	maintainer timeout
 2006-01-02 21:29:30 +00:00
Tim Bishop
b9073575f7 - New upstream version; two patches incorporated. 
PR:		90140
Submitted by:	Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
Approved by:	clement (mentor)
 2005-12-10 14:04:33 +00:00
Emanuel Haupt
f9f998fd02 Update to 1.3.1 
PR:		90029
Submitted by:	Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
 2005-12-06 21:23:04 +00:00
Tim Bishop
ef117d6358 - Update to 2005.13.07 to make fetchable again 
PR:		89976
Submitted by:	Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
Approved by:	clement (mentor)
 2005-12-06 15:13:17 +00:00
Tim Bishop
f5b55cca3b - Update to 3.18 to make fetchable again 
- Mark broken on 6.x upwards

PR:		89977
Submitted by:	Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
Approved by:	clement (mentor)
 2005-12-06 15:10:08 +00:00
Marcus Alves Grando
690b4fde8e Update to 0.5.1 
Unbroken >= 502126
Add SHA256

PR:		89980
Submitted by:	maintainer
 2005-12-06 02:00:55 +00:00
Tim Bishop
ce480365f5 - Fix fetch problems 
PR:		89971
Submitted by:	Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
Approved by:	clement (mentor)
 2005-12-05 16:57:26 +00:00
Edwin Groothuis
b6d6a6eb9e Add conflicts: 
CONFLICTS= p5-bioperl-1.[02468]*

Submitted by:	Fernan Aguero <fernan@iib.unsam.edu.ar>, Mauricio Herrera Cuadra <arareko@yahoo.com>
 2005-12-04 22:12:48 +00:00
Edwin Groothuis
9c69af1094 Add conflicst: 
CONFLICTS=     p5-bioperl-1.[13579]*

Submitted by:	Mauricio Herrera Cuadra <arareko@yahoo.com>,Fernan Aguero <fernan@iib.unsam.edu.ar>
 2005-12-04 22:11:44 +00:00
Edwin Groothuis
ede129019c Fix port: biology/p5-bioperl-devel 
This patch adds a LATEST_LINK line in the Makefile to avoid
      duplication with the 'p5-bioperl' port in the packages/Latest
      directory.

PR:		ports/89916
Submitted by:	Mauricio Herrera Cuadra <mauricio@arareko.net>
 2005-12-04 06:24:05 +00:00
Simon Barner
083e22eece - Re-add p5-bioperl-devel, development version of biology/p5-bioperl 
(A collection of Perl modules for bioinformatics)

PR:		ports/89497
Submitted by:	Mauricio Herrera Cuadra <arareko@yahoo.com>
 2005-12-02 21:40:12 +00:00
Simon Barner
01d9e8ebe5 - Unbreak by updating to 4.4 
- Add dependecy to MESA

PR:		ports/89795
Submitted by:	Johan van Selst <johans@stack.nl>
 2005-12-01 14:42:44 +00:00
Bill Fenner
ac94c20eb3 Add the right MASTER_SITE_SUBDIR, so that this port is fetchable from 
20 sites instead of just 1.
 2005-11-26 03:40:59 +00:00
Pav Lucistnik
4e4ebe662e - Add SHA256 2005-11-24 00:04:00 +00:00
Pav Lucistnik
75d9276aa1 - Drop old povchem.c checksum 
- Add SHA256, SIZE
 2005-11-24 00:02:29 +00:00
Pav Lucistnik
bc1673d0ae - BROKEN: Size mismatch 2005-11-23 23:59:57 +00:00
Kris Kennaway
8295c21a0e BROKEN: Size mismatch 2005-11-16 04:37:44 +00:00
Ade Lovett
54a0b86543 Mass-conversion to the USE_AUTOTOOLS New World Order. The code present 
in bsd.autotools.mk essentially makes this a no-op given that all the
old variables set a USE_AUTOTOOLS_COMPAT variable, which is parsed in
exactly the same way as USE_AUTOTOOLS itself.

Moreover, USE_AUTOTOOLS has already been extensively tested by the GNOME
team -- all GNOME 2.12.x ports use it.

Preliminary documentation can be found at:
	http://people.FreeBSD.org/~ade/autotools.txt

which is in the process of being SGMLized before introduction into the
Porters Handbook.

Light blue touch-paper.  Run.
 2005-11-15 06:52:12 +00:00
Renato Botelho
a9178a7bf6 - Mark it as DEPRECATED - master site disapeared 
- Set EXPIRATION_DATE

PR:		ports/88003
Submitted by:	Jean Milanez Melo <jmelo@freebsdbrasil.com.br>
Approved by:	maintainer timeout (17 days)
 2005-11-11 14:40:32 +00:00
Renato Botelho
67c234358e - Mark it as DEPRECATED - master site disapeared 
- Set EXPIRATION_DATE

PR:		ports/88002
Submitted by:	Jean Milanez Melo <jmelo@freebsdbrasil.com.br>
Approved by:	maintainer timeout (17 days)
 2005-11-11 14:40:25 +00:00
Renato Botelho
8669a508d3 - Mark it as DEPRECATED (mastersite disapeared) 
- Set EXPIRATION_DATE

PR:		ports/88000
Submitted by:	Jean Milanez Melo <jmelo@freebsdbrasil.com.br>
Approved by:	maintainer timeout (16 days)
 2005-11-11 14:29:09 +00:00
Mark Linimon
34da9bdf57 With portmgr hat on, reset maintainership of knu's ports since he has 
been inactive more than 6 months.  We hope to see him back sometime.
 2005-11-11 01:18:01 +00:00
Marcus Alves Grando
23d07b2cdb Update to 1.41 
Take MAINTAINER
Add SHA256

PR:		88792
Submitted by:	Mauricio Herrera Cuadra <mauricio@arareko.net>
 2005-11-11 01:15:35 +00:00
Marcus Alves Grando
12417fc462 Update to 3.14b 
Update MASTER_SITES
Add SHA256
Remove extra TABS

PR:		88007
Submitted by:	Jean Milanez Melo <jmelo@freebsdbrasil.com.br>
Approved by:	maintainer timeout, 14 days
 2005-11-10 01:21:42 +00:00
Kris Kennaway
b1cf59535c Remove expired ports 2005-11-05 09:07:44 +00:00
Joe Marcus Clarke
235c907ae5 Bump PORTREVISION to chase the glib20 shared library update. 2005-11-05 05:22:06 +00:00
Sam Lawrance
94cbb85aef Mark DEPRECATED since upstream is unmaintained and mastersite is gone. 
PR:		ports/88004
Submitted by:	Jean Milanez Melo <jmelo@freebsdbrasil.com.br>
Approved by:	Tony Maher <anthony.maher@uts.edu.au> (maintainer)
 2005-10-29 14:09:33 +00:00
Kris Kennaway
585033d00e BROKEN: Unfetchable 2005-10-28 06:38:35 +00:00
Emanuel Haupt
2cb934bb50 Add p5-Bio-ASN1-EntrezGene, a Regular expression-based Perl Parser for 
NCBI Entrez Gene.

PR:		87423
Submitted by:	Mauricio Herrera Cuadra <mauricio@arareko.net>
Approved by:	novel (mentor) (implicit)
 2005-10-15 20:09:50 +00:00
Sergey Matveychuk
6c2583cf18 - Update to 20050605 
PR:		ports/87266
Submitted by:	maintainer
 2005-10-11 22:33:34 +00:00
Sergey Matveychuk
53f6cba83b - Update to 3.13. It fixes fetching. 
PR:		ports/87264
Submitted by:	maintainer
 2005-10-11 20:44:38 +00:00
Maho Nakata
9f13557fd3 Update to 0.9.8 2005-10-10 09:08:22 +00:00
Trevor Johnson
2ca0f2bd92 Checking MACHINE_ARCH is deprecated. 2005-09-23 16:21:45 +00:00
Herve Quiroz
ab8ee8cdcc Update to version 7 
PR:		86196
Submitted by:	Tony Maher <anthony.maher@uts.edu.au>
Approved by:	maintainer
 2005-09-20 14:59:28 +00:00
Volker Stolz
a15a746cf2 Don't strip static libraries on installation ;) 
(Unbreaks e.g. biology/nclever)
 2005-09-14 09:24:04 +00:00
Renato Botelho
4eafa9b940 Add p5-Bio-Das 1.02, client-side library for Distributed Genome 
Annotation System.

PR:		ports/76379
Submitted by:	Razi Khaja <razi@genet.sickkids.on.ca>
 2005-09-01 13:09:32 +00:00
Kris Kennaway
0d8f47d8f7 This port is scheduled for deletion on 2005-09-22 if it is still broken 
at that time and no PRs have been submitted to fix it.
 2005-07-23 02:53:43 +00:00
Patrick Li
9480dee06a - Update to 1.0.0 
- Make DATADIR/EXAMPLESDIR/DOCSDIR safe
- Don't hardcode ${CPIO}

PR:		ports/82154
Submitted by:	George Hartzell <hartzell@alerce.com>
Approved by:	maintainer
 2005-06-13 04:31:34 +00:00
Oliver Lehmann
fbecb83eab change the libtool version to use from 1.3 to 1.5 2005-05-31 16:41:49 +00:00
Pav Lucistnik
68c58ff3ec - Update to 2.10.0 
Submitted by:	Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
 2005-05-29 18:26:25 +00:00
Pav Lucistnik
947a8e30b5 - Update to 2.10.0 
PR:		ports/81579
Submitted by:	"Choe, Cheng-Dae" <whitekid@gmail.com>
Approved by:	Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
 2005-05-29 18:26:05 +00:00
Max Khon
d164e5eed2 Finish repo copy of wxgtk 2.4.2 ports to wxgtk24* 2005-05-12 16:39:59 +00:00
Jean-Yves Lefort
9f491ad439 - Fix the packing list [1] 
- Add a run dependency on ucpp
- Correct the NABHOME used in pre-install

PR:		ports/80457
Submitted by:	maintainer
Reported by:	pointyhat [1]
 2005-04-29 22:14:29 +00:00
Jean-Yves Lefort
b37b345fdb - Update to 5.0 
- Cleanups

PR:		ports/80372
Submitted by:	maintainer
 2005-04-28 19:01:41 +00:00
Tilman Keskinoz
3fd9de655e Bump PORTEPOCH. 3.6 < 3.62 
Pointyhat to:	arved
 2005-04-22 12:08:12 +00:00
Tilman Keskinoz
4b5bb63afb Upgrade to 3.62 
PR:		79234
Submitted by:	David A. Bader <dbader@ece.unm.edu>
 2005-04-21 13:45:15 +00:00
Yen-Ming Lee
5da6643360 - update grappa to 2.0 
- utilize PLIST_FILES
- unbreak it on 4.x
- update maintainer's email

PR:		79241
Submitted by:	David A. Bader <dbader@ece.unm.edu>
 2005-04-15 18:48:57 +00:00
David E. O'Brien
c3d8037aeb At Kris's request, back out the MACHINE_ARCH spelling correction until 
after 5.4-RELEASE.
 2005-04-12 03:26:56 +00:00
Florent Thoumie
8f8e8eb20c - Change maintainer's email address. 2005-04-11 20:34:36 +00:00
Florent Thoumie
0cde76ebca - ARCH is defined in bsd.port.pre.mk 2005-04-11 11:26:40 +00:00
David E. O'Brien
f2fc2d60ae Assist getting more ports working on AMD64 by obeying the 
Ports Collection documentation and use 'ARCH' rather than 'MACHINE_ARCH'.
 2005-04-11 08:04:41 +00:00
Thierry Thomas
ad720f7433 Upgrade to 0.5 and take maintainership. 
Remark: still broken on FreeBSD-5.x.

PR:		ports/79304
Submitted by:	Fernan Aguero (new maintainer)
Approved by:	Tony Maher (previous maintainer)
 2005-04-08 22:45:42 +00:00
Kris Kennaway
8f10413ffa Try to unbreak on amd64 and ia64 
Approved by:    portmgr (self)
 2005-03-26 22:20:19 +00:00
Kris Kennaway
03f424f513 BROKEN: Unfetchable 
Approved by:    portmgr (self)
 2005-03-26 21:59:50 +00:00
Maho Nakata
3b43fb872d Fix build on amd64 
Submitted by:	kris via pointy hat
Approved by:	portmgr (marcus)
 2005-03-24 01:06:40 +00:00
Herve Quiroz
2ed22f8f65 - Add 'java' category 
- Remove incorrect (and unneeded) JAVA_RUN statement

PR:		78761
Submitted by:	me
 2005-03-20 14:43:55 +00:00
Pav Lucistnik
320a3ff48e - Fix man page damage I did last night 
Submitted by:	Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
 2005-03-20 11:47:59 +00:00
Pav Lucistnik
807384d668 - Update to 2.2.10 from 20041020 
- Transfer maintainership

PR:		ports/67735
Submitted by:	Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
Approved by:	old maintainer indirectly in
http://lists.freebsd.org/pipermail/freebsd-ports-bugs/2004-June/035351.html
 2005-03-19 21:32:13 +00:00
Alexey Dokuchaev
44ff373a2a From the PR: 
I've added PORTREVISION to the port and set it to the release
  date as in the lang/gcc* ports.  Since the distinfo file is not
  used, this would help users know when they have to update their
  ports.

  Although newer release might be made, the idea is to bump
  PORTREVISION for important feature releases on when significant
  bugs are fixed.

  Other minor (cosmetic) changes also applied.

PR:		ports/78963
Sumbitted by:	maintainer
 2005-03-18 13:01:07 +00:00
Joe Marcus Clarke
b3458f652e Bump PORTREVISION to chase the glib20 shared lib version change. 2005-03-12 10:54:27 +00:00
Sergey Matveychuk
5282793c25 - biology/act is redundant after biology/artemis update 
PR:             ports/76217
Submitted by:   Fernan Aguero <fernan@iib.unsam.edu.ar>
Approved by:	maintainer timeout (2 monthes)
 2005-03-12 08:07:23 +00:00
Sergey Matveychuk
0dc38c05ba - Update to version 6 
- Pass maintainership to submitter

PR:		ports/76219
Submitted by:	Fernan Aguero <fernan@iib.unsam.edu.ar>
Approved by:	maintainer timeout (2 monthes)
 2005-03-12 08:01:19 +00:00
Thierry Thomas
142b74833b Add finchtv 1.3.0, a chromatogram trace viewer. 
PR:		70271
Submitted by:	Fernan Aguero <fernan (at) iib.unsam.edu.ar>
 2005-03-11 21:16:16 +00:00
Kirill Ponomarev
4b76311e47 Fix build on 4.x 
PR:		ports/77697
Submitted by:	Sam Lawrance <boris at brooknet.com.au>
 2005-02-19 06:38:25 +00:00
Kris Kennaway
11ea174ccb As previously announced, remove ports that have reached their expiry date, 
and the handful of ports that depended on them.
 2005-02-18 23:44:49 +00:00
Kirill Ponomarev
413ef4bf43 Update to version 2.0.3 
PR:		ports/77676
Submitted by:	Sam Lawrance <boris at brooknet.com.au>
 2005-02-18 13:45:42 +00:00
Kirill Ponomarev
10571886d6 Readd mistakenly removed patch to honour CC/CFLAGS. 2005-02-18 13:41:09 +00:00
Kirill Ponomarev
a8944ffbf8 Update to version 1.40 
PR:		ports/77675
Submitted by:	Sam Lawrance <boris at brooknet.com.au>
 2005-02-18 13:39:34 +00:00
Kirill Ponomarev
0b4743610c Fix unfetchable tarball, it was renamed and relocated on original 
server.

PR:		ports/77674
Submitted by:	Sam Lawrance <boris at brooknet.com.au>
 2005-02-18 12:58:07 +00:00
Sergey Matveychuk
73d0a2892a - Add (or fix) CONFLICTS line. The ports install bin/digest. 
Approved by:	portmgr (krion)
 2005-02-11 21:11:51 +00:00
Maho Nakata
d8a8a937f0 update to 0.97 2005-02-07 08:39:51 +00:00
Mark Linimon
d4bb9bdf92 With portmgr hat on, reset maintainership of this port. All of wjv's 
other ports were reset a couple of months ago; this one appears to have
been missed.
 2005-01-22 04:43:18 +00:00
Maho Nakata
a8fdc546a8 o update to 4.3 
o unbreak
o due to no fix for long period, drop maintainership to ports.
 2005-01-20 03:44:55 +00:00
Akinori MUSHA
ad31ad2bd2 Update to 0.6.2. 2004-12-25 17:52:46 +00:00
Kris Kennaway
b70e8b7e1d This port is scheduled to be removed on 2005-02-18 if it is still 
broken at that time, and a fix has not been submitted to GNATS.
 2004-12-18 23:02:35 +00:00
Kirill Ponomarev
f4bbeec3cb Update to version 2.0.8 
PR:		ports/75106
Submitted by:	Ports Fury
 2004-12-18 18:48:13 +00:00
Sergey Matveychuk
88de31623a - Update to 2004.12.16 
PR:		ports/75205
Submitted by:	maintainer
 2004-12-18 15:14:42 +00:00
Mark Linimon
4aa015434f Clean up wording of IGNORE output. 2004-12-17 08:01:21 +00:00
Mark Linimon
600b5645fd Unquote the IGNORE string. 2004-12-17 07:43:11 +00:00
Mark Linimon
020f0ea235 With portmgr hat on, switch from BROKEN to ignore. It does indeed build. 2004-12-17 06:43:46 +00:00
Pav Lucistnik
b5e176497d - Fix OPTIONS handling 
Pointy hat to:	sem
 2004-12-11 23:32:32 +00:00
Sergey Matveychuk
5e2edc3f15 Not a real update with the last patch. 
The real update here.
 2004-12-11 03:58:19 +00:00
Sergey Matveychuk
fd116809ac - This update brings seaview to the latest release (dated 09.24.04 
in the FTP site).

- While here add a modeline for vi, and fix a tab (cosmetic)

- Make portlint happy.

PR:		ports/74897
Submitted by:	maintainer
 2004-12-11 03:49:29 +00:00
Pav Lucistnik
487872e2c3 - Add some sites I found with Google, as old master site don't have this 
version anymore

Reported by:	pointyhat via krion
 2004-12-09 13:33:55 +00:00
Kris Kennaway
0a01282986 BROKEN: Broken distinfo file 2004-12-04 01:45:38 +00:00
Hye-Shik Chang
5a37bd265f Fix build on Python 2.4 
Spotted by:	kris
 2004-12-02 05:51:25 +00:00
Kirill Ponomarev
39a1da7133 Update MASTER_SITES and WWW: line 
PR:		ports/74421
Submitted by:	Ports Fury
 2004-11-26 19:45:59 +00:00
Sergey Matveychuk
883e920692 [new port] biology/embassy 
PR:		ports/74330
Submitted by:	Fernan Aguero <fernan(at)iib.unsam.edu.ar>
 2004-11-26 16:34:22 +00:00
Sergey Matveychuk
626e4b86a8 - Update to 2.9.0 
- Pass maintainership to submitter

PR:             ports/74333
Submitted by:   Fernan Aguero <fernan(at)iib.unsam.edu.ar>
 2004-11-26 01:11:43 +00:00
Kris Kennaway
2a30ca0747 Add missing files 2004-11-26 00:25:40 +00:00
Sergey Matveychuk
d667344504 - Update to 2.03 
- Pass maintainership to submitter

PR:		ports/74332
Submitted by:	Fernan Aguero <fernan(at)iib.unsam.edu.ar>
 2004-11-25 23:03:54 +00:00