- Explicitly list all required Qt components in USE_QT4 instead of relying
on them being silently picked up through `www/webkit-qt4' dependency
- Group *_build components together while here
- Remove one REINPLACE_CMD call that is no longer needed
Due to questionable c++, GCC 4.9 and newer cannot build seqan. An update
has been in the works that will enable clang compilers and all versions
of GCC to build seqan, but it is not quite ready yet. While waiting for
it, limit the version of GCC used to 4.8.
PR: 196851
include GH_PROJECT/GH_ACCOUNT/GH_TAGNAME. This prevents the distfile
having the same name despite changing one of these values and causing
a bad checksum.
Differential Revision: https://reviews.freebsd.org/D2103
Reviewed by: mat
With hat: bdrewery
- Update version 4.5.2=>4.5.3.4
- Add LICENSE (GPLv3)
- Remove PDFLIBS as OPTIONS as it is no loner an optional requirement
PR: 198602
Submitted by: pi
Approved by: bapt marino (implicit)
- Remove dependencies in core
- Put testing depends in TEST_DEPENDS
- Remove unnecessary bsd.port.options.mk inclusions
- Remove checks for Perl versions that no longer exist in the ports tree
- Sort plists, some of which were so jumbled that I have to assume
the plist was randomized before committing
A lot of the plist changes in this commit are moving PERL5_MAN3 after
SITE_PERL. It's repo churn now, but it makes updating the ports later
far easier.
Reduce restrictions from RESTRICTED to NO_CDROM -- the licensing
allows use by academic community as long as it is not redistributed.
Upstream still do not version their "releases", so next time they
reroll the tarball, the download will start breaking again. But
this time, it will be possible to fetch it from FreeBSD mirrors.
Hide most of the optional data files under the DOCS-option and
streamline various build-related scriptlets.
stop rerolling releases (and breaking downstream checksums) now.
While here, allow parallel builds (seems to work again now) and stop
extraction of unused subdirectories.
- Blixem
o Previously-unsupported GFF feature types can now be displayed
as a new 'basic feature' type.
o Styles are now applied to the detail view as well as the big
picture, so feature display is more consistent across the two
views.
o Fix a bug where styles were not being applied to
dynamically-loaded features.
- Dotter
o Added a 'maximise' button for the greyramp tool.
o Small fixes to inconsistencies in context-sensitive menus and
keyboard shortcuts.
The otter port tries to build libotter.a before an object is completely
built (share.o in my case) and ariadne tries to start building in a
directory before it is created (under multiple jobs).
All had similar errors that it couldn't find something during the build,
yet built on a subsequent pass with no adjustments. Most I've seen before
on previous bulk runs.
2015-01-01 biology/boinc-simap: Project shutting down, see http://boincsimap.org/boincsimap/forum_thread.php?id=88
2015-01-01 security/openssh-portable-base: Overwrite-base option/port/pkg will be removed. There is no real need for foot-shooting.
2015-01-01 devel/cedet: Fails to build, use Emacs' builtin cedet package instead
2015-01-01 devel/ecb: does not work with newer Emacs versions, use the elpa package instead
SAM, BAM, and CRAM formats, including indexing, variant calling (in conjunction
with bcftools), and a simple alignment viewer.
WWW: http://www.htslib.org/
PR: 195592
Submitted by: Reed A. Cartwright <cartwright@asu.edu>
formats, such as SAM, CRAM, VCF, and BCF, used for high-throughput sequencing
data. It is the core library used by samtools and bcftools.
WWW: http://www.htslib.org/
PR: 195591
Submitted by: Reed A. Cartwright <cartwright@asu.edu>
