files for elements and diagrams, and includes both a diagram editor and an
element editor.
WWW: http://qelectrotech.org/
PR: ports/146513
Submitted by: Gvozdikov Veniamin <g.veniamin at googlemail.com>
Approved by: tabthorpe (mentor)
prone to hits from tropical systems (currently only in the Tropical
Atlantic). It's intended to display the NHC/TPC data and give you
what you need to make decisions, etc.. It does NOT, nor will it ever,
attempt to do any forecasting on its own---I leave that to the gurus
at the NHC/TPC.
WWW: http://www.jstrack.org/jstrack/
PR: ports/148208
Submitted by: Chris Rees <utisoft@gmail.com>
Feature safe: yes
package allowing the following:
* User-specific atom definitions and polymer chemistry definitions;
* Powerful sequence editing with user-defined glyphs for each monomer
and monomer chemical modification. Multi-region selections;
* Polymer sequence chemical/enzymatic cleavage;
* Intramolecular cross-linking, like disulfide bonds with total resolution
of the peptides generated upon enzymatic cleavage;
* Gas-phase fragmentation of oligomers;
* Mass-to-charge ratio calculations with inline change of ionization agent;
* Calculation of net electrical charge and of isoelectric point (even by
taking into account monomer modifications if polymer is a protein);
* Simulation of isotopic patterns for any chemical formula and z charge;
* A number of plugins allow 1) translation of the sequence from one format
to another (using a dictionary, like between the 1-letter code and the 3-letter
code of proteins) 2) conversion of number format according to any localized
number format 3) sort mass lists.
PR: ports/146564
Submitted by: Gvozdikov Veniamin <g.veniamin@googlemail.com>
ports which makes possible the direct translation of Cabal package
descriptions to FreeBSD ports. It promises both easier addition and
maintenance for Cabal-based ports.
release can be found at http://library.gnome.org/misc/release-notes/2.30/ .
This release brings initial PackageKit support, Upower (replaces power
management part of hal), cuse4bsd integration with HAL and cheese, and a
faster Evolution.
Sadly GNOME 2.30.x will be the last release with FreeBSD 6.X support. This
will also be the last of the 2.x releases. The next release will be the
highly-anticipated GNOME 3.0 which will bring with it a new UI experience.
Currently, there are a few bugs with GNOME 2.30 that may be of note for our
users. Be sure to consult the UPGRADING note or the 2.30 upgrade FAQ at
http://www.freebsd.org/gnome/docs/faq230.html for specific upgrading
instructions, and the up-to-date list of known issues.
This release features commits by avl, ahze, bland, marcus, mezz, and myself.
The FreeBSD GNOME Team would like to thank Anders F Bjorklund for doing the
initual packagekit porting.
And the following contributors & testers for there help with this release:
Eric L. Chen
Vladimir Grebenschikov
Sergio de Almeida Lenzi
DomiX
walder
crsd
Kevin Oberman
Michal Varga
Pavel Plesov
Bapt
kevin
and ITetcu for two exp-run
PR: ports/143852
ports/145347
ports/144980
ports/145830
ports/145511
string, generating a Chemistry::Pattern object. It is a file I/O driver for
the PerlMol toolkit.
WWW: http://search.cpan.org/dist/Chemistry-File-SMARTS/
PR: ports/145143
Submitted by: Steve Wills <steve at mouf.net>
connection table, such as that obtained by a 2D representation of the
molecule or from a SMILES string.
WWW: http://search.cpan.org/dist/Chemistry-3DBuilder/
PR: ports/145143
Submitted by: Steve Wills <steve at mouf.net
string, generating a Chemistry::Pattern object. It is a file I/O driver for
the PerlMol toolkit.
WWW: http://search.cpan.org/dist/Chemistry-File-SMARTS/
PR: ports/145143
Submitted by: Steve Wills <steve at mouf.net>
structure; that is, to number the atoms in a unique way regardless of the
input order.
WWW: http://search.cpan.org/dist/Chemistry-Canonicalize/
PR: ports/145143
Submitted by: Steve Wills <steve at mouf.net>
its 3D coordinates by using simple cutoffs, and for guessing the formal bond
orders.
WWW: http://search.cpan.org/dist/Chemistry-Bond-Find/
PR: ports/145143
Submitted by: Steve Wills <steve at mouf.net>
files, a Java package providing an object-oriented interface to HDF data
objects, and Java Native Interfaces to the standard HDF libraries.
WWW: http://www.hdfgroup.org/hdf-java-html/index.html
PR: ports/143859
Submitted by: rfarmer at predatorlabs.net
PyQt-4.7 for FreeBSD. The official update notes can be found at
http://www.riverbankcomputing.com
We'd like to say thanks to all helpers, testers and submitters.
software package developed at MIT to model electromagnetic systems,
along with our MPB eigenmode package.
WWW: http://ab-initio.mit.edu/wiki/index.php/Meep
PR: ports/142158
Submitted by: Stas Timokhin <devel@stasyan.com>
Approved by: portmgr (miwi)
audio/ccaudio||2010-01-18|Has expired: has been broken for 4 months
audio/py-libmpdclient||2010-01-18|Has expired: has been broken for 3 months
chinese/gbk2uni||2010-01-18|Has expired: has been broken for 6 months
chinese/iiimf-le-xcin||2010-01-18|Has expired: has been broken for 3 months
devel/adabindx||2010-01-18|Has expired: has been broken for 3 months
devel/agide||2010-01-18|Has expired: has been broken for 6 months
devel/asis||2010-01-18|Has expired: has been broken for 3 months
devel/callgrind||2010-01-18|Has expired: Included in devel/valgrind
devel/florist||2010-01-18|Has expired: has been broken for 3 months
editors/xml2rfc-xxe||2010-01-18|Has expired: has been broken for 4 months
graphics/gephex||2010-01-18|Has expired: has been broken for 3 months
graphics/irit||2010-01-18|Has expired: has been broken for 3 months
graphics/pixieplus||2010-01-18|Has expired: has been broken for 6 months
japanese/expect||2010-01-18|Has expired: has been broken for 3 months
lang/pnetc||2010-01-18|Has expired: has been broken for 5 months
mail/libnewmail||2010-01-18|Has expired: has been broken for 3 months
net-mgmt/flowscan||2010-01-18|Has expired: has been broken for 5 months
net/astmanproxy||2010-01-18|Has expired: has been broken for 3 months
palm/prc-tools||2010-01-18|Has expired: has been broken for 4 months
print/latex-msc||2010-01-18|Has expired: has been broken for 3 months
science/xloops-ginac||2010-01-18|Has expired: has been broken for 3 months
shells/bush||2010-01-18|Has expired: has been broken for 3 months
textproc/iiimf-gnome-im-switcher||2010-01-18|Has expired: has been broken for 4 months
textproc/iiimf-gtk||2010-01-18|Has expired: has been broken for 3 months
x11-toolkits/gtkada-devel||2010-01-18|Has expired: has been broken for 3 months
x11-toolkits/gtkada||2010-01-18|Has expired: has been broken for 3 months
x11-wm/ion-2||2010-01-18|Has expired: has been broken for 4 months
United States Geological Survey's web server. You provide the latitude
and longitude in degrees, with south latitude and west longitude being
negative. The return is typically a hash containing the data you want.
Query errors are exceptions by default, though the object can be configured
to signal an error by an undef response, with the error retrievable from
the 'error' attribute.
WWW: http://search.cpan.org/dist/Geo-WebService-Elevation-USGS/
building bioinformatics-related tools and utilities.
Current list of features includes: a Sequence data type supporting
protein and nucleotide sequences and conversion between them.
WWW: http://blog.malde.org/index.php/the-haskell-bioinformatics-library/
PR: ports/142187
Submitted by: Jacula Modyun <jacula(at)gmail.com>
of harmonic inversion - given a discrete-time, finite-length signal
that consists of a sum of finitely-many sinusoids (possibly exponentially
decaying) in a given bandwidth, it determines the frequencies, decay
constants, amplitudes, and phases of those sinusoids.
WWW: http://ab-initio.mit.edu/wiki/index.php/Harminv
PR: ports/142154
Submitted by: Stas Timokhin <devel@stasyan.com>
e-mail addresses from the pkg-descr file that could reasonably
be mistaken for maintainer contact information in order to avoid
confusion on the part of users looking for support. As a pleasant
side effect this also avoids confusion and/or frustration for people
who are no longer maintaining those ports.
