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1373 Commits

Author SHA1 Message Date
Wen Heping
baa9b66158 - Take maintainership 2012-10-01 14:55:55 +00:00
Thomas Abthorpe
d46aafc64e - Reassign to the heap at maintainer's request 2012-10-01 14:45:16 +00:00
Max Brazhnikov
ecd280d820 Add new ports biology/plink [1] and biology/plinkseq [2]: 
PLINK is a free, open-source whole genome association analysis toolset.
PLINK/SEQ is an open-source C/C++ library for working with human
genetic variation data.

PR:		ports/171918 [1]
PR:		ports/171922 [2]
Submitted by:	Jason Bacon <jwbacon at tds.net>
 2012-09-27 09:59:25 +00:00
Ruslan Makhmatkhanov
9f67b5e7f1 - update to 1.60 
while here:
- convert Makefile header into two-line format
- update COMMENT (indefinite article removed)
- change USE_PYTHON to just -2.7
- remove py-reportlab from BUILD_DEPENDS and kick PYTHON_SITELIBDIR from there
- tab -> space change in pkg-descr:WWW

PR:		171115
Submitted by:	wen
Approved by:	Mauricio Herrera Cuadra <mauricio at arareko dot net> (maintainer)
 2012-09-25 08:06:42 +00:00
Alexey Dokuchaev
bd4927ffa4 Mea culpa, s/Whom/Created by/ 2012-09-23 15:40:58 +00:00
Alexey Dokuchaev
e6bc1ecae5 - Adjust "Created by" tag to include more complete submitter's information 
- Mute MKDIRs, remove trailing dot from RESTRICTED, drop leading indefinite
  article from COMMENT where appropriate
 2012-09-23 15:38:58 +00:00
Thomas Abthorpe
f48ef480ea - Reassign to the heap at maintainer's request 2012-09-22 15:34:16 +00:00
Baptiste Daroussin
6b968aca1e Deprecated a bunch a ports with nor more public distfiles (thanks ehaupt's 
distilator
 2012-09-20 22:26:26 +00:00
Mark Linimon
3fd15ea0ae Mark as broken on sparc64: depends on thread-local storage, which is not 
available on sparc64.

Hat:		portmgr
 2012-09-08 08:30:39 +00:00
Baptiste Daroussin
0ff48b2c81 Fix build with clang 2012-08-24 10:18:51 +00:00
Michael Scheidell
1217f4c6f2 - Submitter is now maintainer 
PR:		ports/169920
Approved by:	Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
 2012-08-07 13:54:02 +00:00
Michael Scheidell
2c946497ba - Update to version 6.903 
PR:		ports/169920
Submitted by:	"Reed A. Cartwright" <cartwright@asu.edu>
Approved by:	maintainer (timeout, 21 days)
 2012-08-07 12:26:39 +00:00
Koop Mast
5aa7246575 Switch from libglut to freeglut and retire libglut. Libglut hasn't been 
developed in years and has been dropped from the MESA 8.0 distribution.
Freeglut is a rewrite of glut and is actively developed and is used by
many linux distributions instead of libglut.

Bump all ports that directly depend on libglut because of the shlib version
change.

There are some extra items in this patch.

*) Because freeglut doesn't have the same dependancies as libglut, some ports
	need extra dependencies added to USE_XORG to make them build.
*) Mark graphics/f90gl broken, f90gl depends on a header that is only shipped
	with libglut.
*) Remove option for libglut/freeglut selection in games/cake, only freeglut
	remains now.
*) While here fix a png related build issue games/vegastrike.

Thanks to miwi for running the exp-run.

Approved by:	portmgr (miwi)

Collaboration with:	zeising@
Obtained from:	xorg-dev staging area.
 2012-08-04 22:52:02 +00:00
Carlo Strub
db5e2bc177 Fix typos in COMMENT 
Approved by:	portmgr@ (implicit)
 2012-07-29 11:17:02 +00:00
Carlo Strub
d5fda8cb2c Fix typos in COMMENT 2012-07-25 06:32:06 +00:00
Carlo Strub
1863cc77b0 Fix typos in COMMENT 2012-07-24 07:19:21 +00:00
Gerald Pfeifer
ebd255b2f9 Replace USE_GCC=4.4+ by USE_GCC=4.6+ since GCC 4.4 is on its way out. 
Approved by:	maintainer
 2012-07-21 22:20:32 +00:00
Sunpoet Po-Chuan Hsieh
27e2f4a9fa - Update to 1.23 
- Add LICENSE
- Remove WRKSRC

Changes:	http://search.cpan.org/dist/Bio-MAGETAB/Changes
 2012-07-19 16:42:55 +00:00
Andrej Zverev
a41069ab3b - Remove SITE_PERL from *_DEPENDS 
Approved by: portmgr@ (bapt@)
 2012-06-30 14:53:22 +00:00
Andrej Zverev
996f1f37d7 - Remove SITE_PERL from *_DEPENDS 
Approved by: portmgr@ (bapt@)
 2012-06-30 05:23:19 +00:00
Dirk Meyer
79ed41a8a0 - reset MAINTAINER 2012-06-26 05:44:19 +00:00
Doug Barton
44fa804810 s/X11BASE/LOCALBASE/, or equivalent. 
The X11BASE variable is long gone, however these ports were not updated.
 2012-06-24 21:53:38 +00:00
Sunpoet Po-Chuan Hsieh
ac4c9341cf - Update to 2.29 
Changes:	http://search.cpan.org/dist/Bio-Graphics/Changes
 2012-06-18 09:30:35 +00:00
Sylvio Cesar Teixeira
4e26180092 - Update to version 2.1.8 
Remove file:
files/patch-Makefile.in
files/patch-configure
files/patch-src__control__defaults.h
pkg-plist

PR:		ports/168994
Submitted by:	KATO Tsuguru <tkato432@yahoo.com>
 2012-06-17 20:22:32 +00:00
Sylvio Cesar Teixeira
5d64a9fe70 - Update to version 2.12.3 
PR:		ports/168993
Submitted by:	KATO Tsuguru <tkato432@yahoo.com>
 2012-06-17 20:04:32 +00:00
Sunpoet Po-Chuan Hsieh
8825b172e2 - Update to 0.50 
- Add TEST_DEPENDS
- Sort PLIST
 2012-06-12 18:55:28 +00:00
Steve Wills
63d09c9c9b - Convert all remaining instances of BUILD_DEPENDS=${RUN_DEPENDS} or 
RUN_DEPENDS=${BUILD_DEPENDS} to use := which portlint has warned
  about for a while.

PR:		ports/168208
Approved by:	portmgr (miwi)
 2012-06-10 18:42:48 +00:00
Dmitry Marakasov
02812eb4fb - Fix maintainer email 
Submitted by:	maintainer via private email
 2012-06-07 13:04:53 +00:00
Dmitry Marakasov
f234335598 SeqAn is an open source C++ library of efficient algorithms 
and data structures for the analysis of sequences with the
focus on biological data. The library is licensed under the
3-clause BSD license except the applications which are GPL.

WWW: http://www.seqan.de/

PR:		167571
Submitted by:	Hannes <h2+fbsdports@fsfe.org>
 2012-06-06 17:51:33 +00:00
Andrej Zverev
24374f6b47 - Remove SITE_PERL from *_DEPENDS 2012-06-04 08:31:14 +00:00
Sunpoet Po-Chuan Hsieh
eb45489616 - Update to 0.49 2012-06-03 15:12:49 +00:00
Carlo Strub
fe19e92f65 Set maintainership back to ports@ 2012-06-03 12:14:38 +00:00
Dirk Meyer
2b74a89bc8 - update png to 1.5.10 2012-06-01 05:26:28 +00:00
Carlo Strub
2f103993ae Remove non-serving mirror 2012-05-20 12:04:26 +00:00
Pav Lucistnik
c4e07de974 - Adjust BOINC_* variables to be consistent with new system in boinc-client 2012-05-16 13:46:30 +00:00
Sunpoet Po-Chuan Hsieh
b9d8e487cc - Update to 0.48 
- Add BUILD_DEPENDS
 2012-05-03 09:48:21 +00:00
Frederic Culot
453bfbe544 - Update to 1.3 
Changes:	http://search.cpan.org/dist/Bio-GFF3/Changes
 2012-04-26 10:37:09 +00:00
Wen Heping
c7aa0a29eb - Update to 2.28 
ChangeLog: http://cpansearch.perl.org/src/LDS/Bio-Graphics-2.28/Changes
 2012-04-17 13:02:59 +00:00
Frederic Culot
6c94ec10d3 - Update to 1.2 
- Add LICENSE (Artistic 1 & GPL 1)
- Add TEST_DEPENDS

Changes:	http://search.cpan.org/dist/Bio-GFF3/Changes
 2012-04-16 13:06:04 +00:00
Wen Heping
6058b2661d - Update to 0.47 2012-04-11 01:34:57 +00:00
Wen Heping
347254b1e5 - Update to 1.0 
- Reset maintainer to perl@

Feature safe:	yes
 2012-03-22 11:08:28 +00:00
Philip M. Gollucci
b59621d3ae - Revert ports/165605 as requested by portmgr@ 
Note: devel/p5-B-Size and devel/p5-Devel-Arena
where intentionally not restored.

PR:             ports/165605
Approved by:    portmgr (bapt)
Feature safe:   yes (I sure hope so)
 2012-03-13 16:15:36 +00:00
Philip M. Gollucci
2cf4c1e2c8 - Remove ports that only work with < perl 5.12 (devel/p5-B-Size, devel/p5-Devel-Arena) 
- Remove conditionals for PERL_LEVEL < 501200
- Remove regression-test targets b/c this will be centralized in Mk/bsd.perl.mk
- Other minor cleanups
  RUN_DEPENDS = ${BUILD_DEPENDS} -> RUN_DEPENDS:= ${BUILD_DEPENDS}

PR:             ports/165605
Submitted by:   pgollucci (myself)
Approved by:    portmgr (linimon)
Exp Run by:     linimon
Tested by:      make index
 2012-03-08 18:45:38 +00:00
Wen Heping
c01d2361ab - Update to 1.59 
PR:		ports/165582
Submitted by:	wen@ (myself)
Approved by:	Mauricio Herrera Cuadra <mauricio@arareko.net> (maintainer, via email)
 2012-03-06 06:40:50 +00:00
Wen Heping
6571b7f059 - Update to 0.46 2012-03-05 08:22:46 +00:00
Wen Heping
f052f825e0 - Update to 0.4.5 2012-02-23 13:43:25 +00:00
Martin Wilke
b34594ac8a - Update MASTER_SITES and WWW: line 
- Add LICENSE
- Support PLIST_FILES

PR:		164985
Submitted by:	Ports Fury
 2012-02-19 23:24:52 +00:00
Maho Nakata
a8d4c9422e update to 1.5.0.1. 2012-02-16 02:30:10 +00:00
Sunpoet Po-Chuan Hsieh
69210a7789 - Update to 0.78 
- Sort TEST_DEPENDS, MAN1, MAN3 and PLIST

Changes:	http://search.cpan.org/dist/Bio-NEXUS/doc/changes.txt
 2012-02-11 02:04:41 +00:00
Sunpoet Po-Chuan Hsieh
c9472c880f - Update to 2.26 
Changes:	http://search.cpan.org/dist/Bio-Graphics/Changes
 2012-02-11 02:04:24 +00:00