includes workarounds intended to fix the broken sparc64
build, and fixes to the static libR, which is now in a
separate slave port, math/libR)
PR: 158947 [1]
Submitted by: wen ([1], independently)
remove support for them from bsd.java.mk. As Jikes is not available in Java 1.5
or higher, remove it from bsd.java.mk too (suggested by hq@) and from the ports
which used it (only occurences were USE_JIKES=no). Support for the Blackdown VM
is also removed, as it is not available in Java 1.5 and higher.
Also remove the mapping from Java 1.1-1.4 to Java 1.5+ in bsd.java.mk to detect
old, broken ports; therefore bump the minimal value of JAVA_VERSION to 1.5.
While here, replace static values of JAVA_VERSION in files/*.in by
%%JAVA_VERSION%% .
PR: ports/158969
Submitted by: rene
Tested on: pointyhat-west -exp
- Bump PORTREVISION of dependent ports on textproc/hs-tagsoup, i.e.
devel/h-hoogle, science/hs-bio, and textproc/pandoc.
PR: ports/157826
Submitted by: Jin-Sih Lin <linpct@gmail.com>
Ws2300 manipulates the LaCrosse WS-2300 weather station via its RS232
interface. It can read and write values, and can continuously log data
from WS-2300 to a file or SQL database.
WWW: http://ace-host.stuart.id.au/russell/files/ws2300/
PR: ports/153452
Submitted by: Stefan Bethke <stb@lassitu.de>
Approved by: gabor (mentor)
Changes:
- Corrected "make install". Will now create the installation-directory
$(DESTDIR)$(htmldir) for holding the symbolic links for HTML access to the
unit database if that directory doesn't exist.
- Modified "formatter.c" to more rigorously handle the return value of
snprintf().
- Modified documentation on ut_format() to indicate that the number of bytes
returned depends on the snprintf() function that's used.
GHC in the ports tree has been updated to 7.0.3 and all other Haskell ports
are also updated to their corresponding Haskell Platform versions, or latest
versions.
We would like to acknowledge the support of the FreeBSD Donations Team and
Eotvos Lorand University, Faculty of Informatics who contributed to the server
that we used for testing.
We would also like to thank all the testers who tested FreeBSD Haskell ports
and provided their feedback.
PR: ports/156642
Approved by: tabthorpe (mentor)
Obtained from: FreeBSD Haskell
- switch to the bundled Rblas and Rlapack by default (this
can be changed by setting BLAS and LAPACK) which favors
correctness in some corner cases over a slight performance
penalty; this will be revisited after the blas and lapack
updates
- replace the STATIC_LIBR option with a LIBR option (on
by default): if on, libR.a and libR.so are installed,
and R is linked to libR.so. Otherwise, R is static, and
no libRs are installed.
- remove the superfluous copy of libR.so in ${LOCALBASE}/lib [1]
- enable the cairo and pango elements in the X11() graphics
device by default, controlled by new PANGOCAIRO option
- add a few small patches to dependent ports, bumping
PORTREVISION where necessary
PR: 153309 [1]
Approved by: thierry (rkward*), wen (rpy*, R-cran-*)
2011-05-01 audio/albumart: Upstream disapear and distfile is no more available
2011-05-01 audio/aylet: Upstream disapear and distfile is no more available
2011-05-01 audio/cantus: Upstream disapear and distfile is no more available
2011-05-01 audio/xaylet: Upstream disapear and distfile is no more available
2011-05-01 science/oases: Upstream disapear and distfile is no more available
2011-05-01 shells/pash: Upstream disapear and distfile is no more available
- Change target of symlink libsvm.so from absolute path to relative path so
that it behaves like what other people doing [2]
- Add LICENSE
PR: ports/156599 [1]
Submitted by: dikshie <dikshie at sfc.wide.ad.jp> [1]
Submitted by: jsa@ [2]
2011-04-17 cad/tclspice: has been broken for more than a year
2011-04-17 comms/hcfmdm: does not compile on 7.X or higher
2011-04-17 databases/mysqlcc: has been broken for almost a year
2011-04-17 devel/ruby-rjudy: does not compile on FreeBSD 7.x or newer
2011-04-17 devel/xfc: does not compile on FreeBSD 7.x or newer
2011-04-17 devel/lamson: has been broken for a half year
2011-04-17 devel/cocktail: does not build on FreeBSD 7.x or newer
2011-04-17 devel/djgpp-gcc: has been broken for half a year
2011-04-17 devel/gauche-sdl: has been broken for a year
2011-04-17 devel/gdb53-act: does not compile on FreeBSD 7.x and up
2011-04-17 editors/zed: does not compile on FreeBSD 7.x or newer
2011-04-17 games/aqbubble: does not compile on FreeBSD 7.x or newer
2011-04-17 graphics/libvisual-plugins: has been broken for 3 years
2011-04-17 japanese/roundcube: has been broken for almost a year
2011-04-17 japanese/tkstep80: does not compile on FreeBSD 7.x or newer
2011-04-17 lang/u++: has been broken for over a half year
2011-04-17 lang/pugs: has been broken for over a year
2011-04-17 lang/mozart: does not compile on FreeBSD 7.x or newer
2011-04-17 math/linalg: does not build on FreeBSD 7.x or newer
2011-04-17 math/R-cran-igraph: has been broken for over a half year
2011-04-17 misc/ftree: has been broken for over a half year
2011-04-17 multimedia/katchtv: has been broken for a half year
2011-04-17 multimedia/libomxil-bellagio: has been broken for almost a year
2011-04-17 multimedia/banshee-mirage: has been broken for over a half year
2011-04-17 net-p2p/trackerbt: has been broken for a half year
2011-04-17 net/cap: does not compile on FreeBSD 7.x or newer
2011-04-17 net/ggsd: does not compile on FreeBSD 7.x or newer
2011-04-17 net/b2bua: does not compile on FreeBSD 7.x or newer
2011-04-17 net/penguintv: has been broken for a half year
2011-04-17 news/openftd: has been broken for almost a year
2011-04-17 palm/romeo: does not compile on FreeBSD 7.x or newer
2011-04-17 science/pcp: does not compile on FreeBSD 7.x or newer
2011-04-17 science/elmer-fem: has been broken for over a year
2011-04-17 security/newpki-lib: does not compile on FreeBSD 7.x or newer
2011-04-17 security/newpki-server: does not compile on FreeBSD 7.x or newer
2011-04-17 security/xmlsec: does not compile on FreeBSD 7.x or newer
2011-04-17 security/f-protd: has been broken for over a year
2011-04-17 sysutils/xwlans: does not compile on FreeBSD 7.x or newer
2011-04-17 www/bk_edit: does not compile on FreeBSD 7.x and newer
2011-04-17 www/bricolage: has been broken for a half year
2011-04-17 x11-toolkits/gauche-gtk: has been broken for a year
2011-04-17 x11-toolkits/gambas2-gb-qt: has been broken for over a year
2011-04-17 x11-toolkits/php-gtk2: has been broken for over a half year
2011-04-17 x11-toolkits/p5-Tcl-Tk: has been broken for 2 year
2011-04-17 x11/metisse: has been broken for over a half year
seismogram files in the WAV(audio) format. The data are squeezed to
audible frequencies.
ObsPy is an open-source project dedicated to provide a Python framework
for processing seismological data. It provides parsers for common
file formats and seismological signal processing routines which allow
the manipulation of seismological time series (see Beyreuther et. al.
2010). The goal of the ObsPy project is to facilitate rapid application
development for seismology.
WWW: http://www.obspy.org/
scientific data in the free, portable HDF5 format.
Besides providing a simple tool for batch visualization as PNG images,
h5utils also includes programs to convert HDF5 datasets into the formats
required by other free visualization software (e.g. plain text, Vis5d,
and VTK).
WWW: http://ab-initio.mit.edu/wiki/index.php/H5utils
PR: ports/155482
Submitted by: Klaus Aehlig <aehlig at linta.de>
for ObsPy. It includes UTCDateTime, Stats, Stream and Trace
classes and methods for reading seismograms.
ObsPy is an open-source project dedicated to provide a Python
framework for processing seismological data. It provides
parsers for common file formats and seismological signal
processing routines which allow the manipulation of
seismological time series (see Beyreuther et. al. 2010).
The goal of the ObsPy project is to facilitate rapid application
development for seismology.
WWW: http://www.obspy.org/
for seismology. Capabilities include filtering, triggering,
rotation, instrument correction and coordinate transformations.
ObsPy is an open-source project dedicated to provide a Python
framework for processing seismological data. It provides parsers
for common file formats and seismological signal processing
routines which allow the manipulation of seismological time
series (see Beyreuther et. al. 2010). The goal of the ObsPy
project is to facilitate rapid application development for seismology.
WWW: http://www.obspy.org/
for ObsPy. It includes UTCDateTime, Stats, Stream and Trace
classes and methods for reading seismograms.
ObsPy is an open-source project dedicated to provide a Python
framework for processing seismological data. It provides
parsers for common file formats and seismological signal
processing routines which allow the manipulation of
seismological time series (see Beyreuther et. al. 2010).
The goal of the ObsPy project is to facilitate rapid application
development for seismology.
WWW: http://www.obspy.org/
BUFR is approved by WMO (World Meteorological Organization) as the standard
universal exchange format for meteorological observations, gradually
replacing a lot of older alphanumeric data formats.
This module provides methods for decoding and encoding BUFR messages, and
for displaying information in BUFR B and D tables and in BUFR flag and code
tables.
Installing this module also installs some programs: bufrread.pl,
bufrresolve.pl, bufrencode.pl, bufr_reencode.pl and bufralter.pl. See
https://wiki.met.no/bufr.pm/start for examples of use. For the majority of
potential users of Geo::BUFR I would expect these programs to be all that
you will need Geo::BUFR for.
WWW: http://search.cpan.org/dist/Geo-BUFR/
applications. The package includes: Bayes Regression (univariate or
multivariate dep var), Bayes Seemingly Unrelated Regression (SUR), Binary and
Ordinal Probit, Multinomial Logit (MNL) and Multinomial Probit (MNP),
Multivariate Probit, Negative Binomial (Poisson) Regression, Multivariate
Mixtures of Normals (including clustering), Dirichlet Process Prior Density
Estimation with normal base, Hierarchical Linear Models with normal prior and
covariates, Hierarchical Linear Models with a mixture of normals prior and
covariates, Hierarchical Multinomial Logits with a mixture of normals prior
and covariates, Hierarchical Multinomial Logits with a Dirichlet Process
prior and covariates, Hierarchical Negative Binomial Regression Models,
Bayesian analysis of choice-based conjoint data, Bayesian treatment of linear
instrumental variables models, and Analysis of Multivariate Ordinal survey
data with scale usage heterogeneity (as in Rossi et al, JASA (01)).
WWW: http://www.perossi.org/home/bsm-1
to the R users. It has grown and I think it can be of interest for
the users wanting to implement their own training algorithms as well as
for those others whose needs lye only in the "user space".
WWW: http://rwiki.sciviews.org/doku.php?id=packages:cran:amore
switch some dependencies from science/hdf5 to science/hdf5-18.
As a side note: I think that all ports depending on science/hdf5
could be switched to science/hdf5-18, by defining H5_USE_16_API
when necessary, and then science/hdf5 could be deprecated.
PR: ports/154736
Changes:
- Eliminate expectation and use of leading scale factor in the "have"
unit of udunits2(1).
- Add verification of commit status to "make ftp".
- Add dependency of documentation on version.
- Add "force" flag to tagging rule in makefile.
Feature safe: yes
is designed to produce publication-ready Postscript or PDF
output. SVG, EMF and bitmap formats export are also supported.
The program runs under Unix/Linux, Windows or Mac OS X, and
binaries are provided. Data can be read from text, CSV or FITS
files, and data can be manipulated or examined from within the
application.
WWW: http://home.gna.org/veusz/
PR: ports/153686
Submitted by: Stas Timokhin <devel@stasyan.com>
format and datum of geo coordinates are simply converted. when it is
insufficient in the coordinate system and the format of the standard, it
is possible to add it easily.
WWW: http://search.cpan.org/dist/Geo-Coordinates-Converter/
to fix a runtime error (the "ARCH" value is not set)
- Bump PORTREVISION
- Remove MD5 checksum from distinfo
- Set ONLY_FOR_ARCHS (i386 and amd64)
PR: ports/152955
Submitted by: Benjamin Kaduk <kaduk-fbsd at mit.edu> (maintainer)
libBioLCCC is an open source library for prediction of peptide and
protein retention time in liquid chromatography. It is based on
BioLCCC model (Liquid Chromatography of Biomacromolecules at Critical
Conditions).
pyBioLCCC is set of Python wrappings around libBioLCCC.
WWW: http://theorchromo.ru/lib/
Fix configure to allow build by non-root user (it tests if /usr/local is writable)
Remove MD5 from distinfo
PR: ports/151883
Submitted by: Rob Farmer (maintainer)
Reported & tested by: Wasp <wasp at gmx.ch> [1]
- Passed maintainership to submitter
- Switched to BSD license to adhere to upstream package
PR: ports/151178
Submitted by: Carlo Strub <c-s at c-s dot li>
Changes: https://code.zmaw.de/news/32
New features:
- Using libtool for linking (rpath)
- Changed predefined gaussian grid names from t<RES>grid to n<N>
- Use n80 instead of t106grid to define a Gaussian N80 grid
- Changed percentile parameter type from integer to float
New operators:
- bandpass: Bandpass filtering
- lowpass: Lowpass filtering
- highpass: Highpass filtering
Changed operators:
- eca_gsl: adjust implementation to fit definition by ECA
- expr, exprf: added missing values support
Fixed bugs:
- sellevel: copy zaxis meta data name and units
- seldate: open output file only when time steps found
Approved by: pgollucci (mentor)
to physical quantities. This module allows you to manipulate these units,
generate new derived units from other units, and convert from one unit
to another.
WWW: http://search.cpan.org/dist/Physics-Unit/
PR: ports/150245
Submitted by: Frederic Culot <frederic@culot.org>
set of examples of the basic sets of constants and procedures needed
to understand the behavior of matter.
WWW: http://www.toddmiller.com/epte/
PR: ports/150183
Submitted by: Frederic Culot <frederic@culot.org>
