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3429 Commits

Author SHA1 Message Date
Sunpoet Po-Chuan Hsieh
3f14a5a10f Update to 1.14.0 
Changes:	https://github.com/pysal/pysal/releases
		https://github.com/pysal/pysal/blob/master/CHANGELOG.txt
 2017-07-14 20:09:59 +00:00
TAKATSU Tomonari
c9ac92506f - Add missing dependency 
Reported by:	pkg-fallout
 2017-07-06 03:09:35 +00:00
Richard Gallamore
9495883089 * Updated to 1.7.2 
* New maintainer Jov <amutu@amutu.com>
* Sorted options

Changelog:	https://www.mbdyn.org/userfiles/downloads/CHANGELOG-1.7.txt

PR:		220157
Submitted by:	Jov <amutu@amutu.com> (maintainer), pfg
Reviewed by:	matthew (mentor), matt
Approved by:	matthew (mentor)
Differential Revision:	https://reviews.freebsd.org/D11481
 2017-07-05 15:50:43 +00:00
Sunpoet Po-Chuan Hsieh
6865a11c13 Update to 1.23.0 
Changes:	https://software.ecmwf.int/wiki/display/GRIB/Latest+news
 2017-07-04 08:08:23 +00:00
Tobias C. Berner
5da7ccc1fb Update math/gsl to 2.4 
Exp-Run by:	antoine
PR:		220408
 2017-07-03 20:38:11 +00:00
TAKATSU Tomonari
9548df55c5 - Update to 2.16 2017-07-03 06:01:18 +00:00
Sunpoet Po-Chuan Hsieh
f8b5c00365 Update to 3.4.2 
- Sort USE_PYTHON

Changes:	https://bitbucket.org/levitsky/pyteomics/src/default/CHANGELOG
 2017-07-02 16:10:25 +00:00
Richard Gallamore
717c21d94b * Fix broken symlinks 
PR:		220081
Reported by:	<metaf2xml@users.sourceforge.net>
Reviewed by:	lifanov (mentor)
Approved by:	lifanov (mentor)
Differential Revision:	https://reviews.freebsd.org/D11409
 2017-06-29 19:22:05 +00:00
Sunpoet Po-Chuan Hsieh
cb037d3c98 Update devel/readline to 7.0 patch 3 
- Bump PORTREVISION for shlib change

Changes:	https://cnswww.cns.cwru.edu/php/chet/readline/CHANGES
		https://lists.gnu.org/archive/html/bug-bash/2016-09/msg00107.html
		https://lists.gnu.org/archive/html/bug-readline/2017-01/msg00002.html
Differential Revision:	https://reviews.freebsd.org/D11172
PR:		219947
Exp-run by:	antoine
 2017-06-27 13:46:53 +00:00
Wen Heping
e3489e361a - Update to 3.1.0 2017-06-27 07:04:58 +00:00
TAKATSU Tomonari
844398cd55 - Add new port: science/R-cran-udunits2 
Provides simple bindings to Unidata's udunits library.

  WWW: https://cran.r-project.org/web/packages/udunits2/
 2017-06-27 03:36:03 +00:00
Tobias C. Berner
5e373eaa92 Make ninja opt-out in cmake.mk 
Using ninja instead of make (1) can lead to significant speed ups while building.
Therefore switch from having the ninja generator opt-in to having it opt-out.

Previously cmake-ports that wanted to use ninja could set
    CMAKE_NINJA=yes
now, ports that do not work with ninja can set
    cmake:<existing args>,noninja
Note, that needing this should be an exception and most often points to a broken
cmake of the port.

The ports using cmake were modified
* removed USES=gmake, if ninja is used
* removed MAKE_ARGS, if ninja is used
* added the cmake-argument noninja if necessary

PR:		219629
PR:		213331
Exp-run by:	antoine
Reviewed by:	rakuco
Differential Revision:	https://reviews.freebsd.org/D10748
 2017-06-25 21:07:58 +00:00
Stephen Montgomery-Smith
8aa53dd6fd - Update to 2.11.2. 2017-06-25 18:25:49 +00:00
Richard Gallamore
5a71737e40 * Updated to 2.11 
* New maintainer Jov <amutu@amutu.com>

Changelog:	https://www.csie.ntu.edu.tw/~cjlin/liblinear/log

PR:		220104
Submitted by:	Jov <amutu@amutu.com> (maintainer)
Reviewed by:	matthew (mentor)
Approved by:	matthew (mentor)
Differential Revision:	https://reviews.freebsd.org/D11351
 2017-06-25 16:21:46 +00:00
Richard Gallamore
68fbec18b6 * Updated to 2.2 
Changelog:	http://metaf2xml.sourceforge.net/RelInfo-2.2.txt

PR:		220081
Submitted by:	<metaf2xml@users.sourceforge.net>
Reviewed by:	matthew (mentor)
Approved by:	matthew (mentor)
Differential Revision:	https://reviews.freebsd.org/D11313
 2017-06-25 16:19:05 +00:00
Mark Linimon
983c320ec8 Sort NOT_FOR_ARCHS. While here, clean up some BROKEN usages. 
Approved by:	portmgr (tier-2 blanket)
 2017-06-24 18:36:19 +00:00
Dmitry Marakasov
82e95083d7 - Add LICENSE 
- Switch to options helpers
 2017-06-21 09:01:27 +00:00
Stephen Montgomery-Smith
5ada1c039c - Update to 2.11.1. 2017-06-20 03:31:13 +00:00
Stephen Montgomery-Smith
5ccac07431 - Update to 2.11.0. 2017-06-20 01:49:53 +00:00
Ben Woods
65f49a3ecc science/InsightToolkit: Update to 4.12.0 
Changes this release:
  http://public.kitware.com/pipermail/community/2017-June/013214.html
 2017-06-20 01:20:02 +00:00
Richard Gallamore
459ac1ea70 * Updated to 3.22 
* New maintainer Jov <amutu@amutu.com>

Changelog:	http://www.csie.ntu.edu.tw/~cjlin/libsvm/log

PR:		220102
Submitted by:	Jov <amutu@amutu.com> (maintainer)
Reviewed by:	matthew (mentor)
Approved by:	matthew (mentor)
Differential Revision:	https://reviews.freebsd.org/D11269
 2017-06-19 17:27:24 +00:00
David Naylor
9920d3ae65 qa: add check for NO_ARCH 
If NO_ARCH is set then check that no FreeBSD elf(5) files are in $STAGEDIR.
If an elf(5) file is bundles as part of the package, but is not meant to be
run directly (i.e. the elf(5) file is a payload, and not compiled) then
those files can be added to NO_ARCH_IGNORE to avoid the check from failing,

Changes to ports:
 - Ports that have NO_ARCH set, but actually compile files have had NO_ARCH
   removed.
 - Ports that have elf(5) payloads have had those files added to
   NO_ARCH_IGNORE.
 - R-cran ports that do not set USES=cran:compiles have NO_ARCH set,

PR:		218976
Reviewed by:	antoine, mat
Approved by:	portmgr
 2017-06-18 18:09:16 +00:00
David Naylor
bb547a6642 science/vmd: various fixes 
- fix spelling of VMD license [1]
 - use USES=tcl,tk instead of direct dependency
 - patch vmd to support (tcl|tk)86
 - fix shebang for tcl [1]
 - fix detection of netcdf
 - add sqlite as a dependency (for dmsplugin) [1]
 - add expact as a dependency (for hoomdplugin)
 - rework configuration:
   - explicitly list required components (CONFIGURE_ARGS)
   - call configure directly (instead of via gmake(1))
   - patch configure to accept TCLLDFLAGS and TKLDFLAGS
   - pass PREFIX as an environment variable instead of using sed(1)
   - patch Make-arch to accept environment TCLLDFLAGS and NETCDFLDFLAGS
 - add support for parallel building (except for building plugins)
 - bump PORTREVISION

PR:		219642
Reported by:	Yuri Victorovich <yuri@rawbw.com>
 2017-06-18 06:03:29 +00:00
Stephen Montgomery-Smith
8d6e6ec28c - Fix compilation error (which presumably comes from a change in header files 
associated with python2).
 2017-06-18 03:17:52 +00:00
Thierry Thomas
f58c64ebdf Upgrade science/hdf5-18 to 1.8.19. 
Changelog at
<https://support.hdfgroup.org/HDF5/doc1.8/ADGuide/Changes.html#1819>.
 2017-06-17 09:48:47 +00:00
Sunpoet Po-Chuan Hsieh
64486268fe Remove CONFLICTS: science/netcdf-ftn and science/netcdf3-ftn have been removed over 3 years 2017-06-11 01:53:49 +00:00
Sunpoet Po-Chuan Hsieh
c389e14fe3 Update to 0.3 
- Fix LICENSE
- Add LICENSE_FILE
- Add missing *_DEPENDS

Changes:	https://github.com/scikit-fuzzy/scikit-fuzzy/releases
PR:		219879
Submitted by:	Yuri Victorovich <yuri@rawbw.com> (maintainer)
 2017-06-09 18:44:37 +00:00
Joseph Mingrone
ca72394d1f science/hypre: Fix build with openmpi 
- specify full path to mpicc/mpicxx when setting CC/CXX
- specify mpi include/lib dirs
- set WRKSRC_SUBDIR instead of WRKSRC
- whitespace changes

Approved by:	pfg (maintainer)
 2017-06-08 19:37:02 +00:00
Antoine Brodin
088a545fd4 Mark BROKEN: fails to build 
[ 13%] Building CXX object CMakeFiles/UnitTests.dir/Orthanc/Core/SQLite/Connection.cpp.o
/usr/bin/c++  -DBOOST_FILESYSTEM_VERSION=3 -DBOOST_HAS_DATE_TIME=1 -DBOOST_HAS_FILESYSTEM_V3=1 -DBOOST_HAS_LOCALE=1 -DBOOST_HAS_REGEX=1 -DORTHANC_ENABLE_BASE64=0 -DORTHANC_ENABLE_LOGGING=0 -DORTHANC_ENABLE_MD5=0 -DORTHANC_SQLITE_STANDALONE=1 -DORTHANC_STANDALONE=1 -DORTHANC_STATIC=0 -DORTHANC_WEBVIEWER_VERSION=\"2.2\" -I/wrkdirs/usr/ports/science/orthanc-webviewer/work/.build/AUTOGENERATED -I/usr/local/include -I/usr/local/include/jsoncpp -I/usr/local/include/gdcm-2.6 -O2 -pipe  -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -I/usr/local/include -I/usr/local/include -O2 -pipe -fstack-protector -isystem /usr/local/include -fno-strict-aliasing  -isystem /usr/local/include -o CMakeFiles/UnitTests.dir/Orthanc/Core/SQLite/Connection.cpp.o -c /wrkdirs/usr/ports/science/orthanc-webviewer/work/OrthancWebViewer-2.2/Orthanc/Core/SQLite/Connection.cpp
/wrkdirs/usr/ports/science/orthanc-webviewer/work/OrthancWebViewer-2.2/Orthanc/Core/SQLite/Connection.cpp:346:23: error: no matching constructor for initialization of 'Orthanc::SQLite::FunctionContext'
      FunctionContext context(rawContext, argc, argv);
                      ^       ~~~~~~~~~~~~~~~~~~~~~~

Reported by:	pkg-fallout
 2017-06-08 19:33:40 +00:00
Joseph Mingrone
16600d0c13 New port, science/hypre: Scalable Linear Solvers and Multigrid Methods 
WWW: http://www.llnl.gov/casc/hypre/

PR:		219709
Submitted by:	pfg (maintainer)
Differential Revision:	https://reviews.freebsd.org/D11048
 2017-06-08 03:22:39 +00:00
Sunpoet Po-Chuan Hsieh
6217a43bac Fix build with SQLite 3.19.2 
Submitted by:	Pavel Volkov <pavelivolkov@gmail.com>
Approved by:	portmgr (blanket)
 2017-06-06 13:51:35 +00:00
TAKATSU Tomonari
f4a1fc3fb7 - Update to 2.15 2017-06-06 08:12:50 +00:00
Sunpoet Po-Chuan Hsieh
99ea265f53 Update to 1.22.0 
Changes:	https://software.ecmwf.int/wiki/display/GRIB/Latest+news
 2017-06-05 14:49:41 +00:00
Tobias C. Berner
0e927c0281 Update to 2.7.0 
PR:		219754
Submitted by:	xmj (maintainer)
 2017-06-03 18:03:40 +00:00
Sunpoet Po-Chuan Hsieh
82c97bec20 Convert to options helper 
- Remove outdated PERL_LEVEL check
 2017-06-02 15:39:33 +00:00
Ben Woods
5a694fe75e science/InsightToolkit: Update to 4.11.1 
Changes this release:
  http://public.kitware.com/pipermail/insight-users/2017-May/054519.html
 2017-06-01 15:29:48 +00:00
Thierry Thomas
e284042434 Remove a clash due to #include filedlg.h to fix the build with Gcc 6. 
PR:		219300
Obtained from:	Gilles Duvert (upstream)
 2017-05-31 20:48:06 +00:00
Sunpoet Po-Chuan Hsieh
8b1d897ff6 Update science/hdf5 to 1.10.1 
- Bump PORTREVISION for shlib change

Changes:	https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.1/src/hdf5-1.10.1-RELEASE.txt
 2017-05-30 02:56:43 +00:00
Mark Linimon
378be05b39 Mark some ports failing on armv6, for errors classified as "linker_error". 
While here, pet portlint.

Approved by:	portmgr (tier-2 blanket)
 2017-05-27 22:16:50 +00:00
Sunpoet Po-Chuan Hsieh
4dabf739f6 Fix CONFLICTS_INSTALL 
PR:		219388
Submitted by:	pawel
 2017-05-27 19:42:13 +00:00
Mark Linimon
c52a715800 Mark some ports failing on armv6, for errors classified as "???", 
part 2.

While here, pet portlint.

Approved by:	portmgr (tier-2 blanket)
 2017-05-27 00:20:19 +00:00
Danilo G. Baio
0c2c04b55b science/openbabel: Update to 2.4.1 
Patches removed:
  patch-git_c3abbdda, patch-gcc5-support (Integrated upstream)
  patch-scripts__CMakeLists.txt (Builds without it)

While here, set LICENSE and simplify BUILD_DEPENDS.

Changes: https://github.com/openbabel/openbabel/releases

PR:	219382
Submitted by:	Yuri Victorovich <yuri@rawbw.com>
Approved by:	garga (mentor)
Differential Revision:	https://reviews.freebsd.org/D10837
 2017-05-24 01:43:00 +00:00
Matthew Rezny
b760897dde Revision bump of all ports with USE_GL after consolidation of mesa-libs 
Approved by:	swills (mentor)
Differential Revision:	https://reviews.freebsd.org/D10845
 2017-05-23 05:03:14 +00:00
Wen Heping
f97c2fbd18 - Update to 0.9.1 2017-05-23 02:34:02 +00:00
Wen Heping
5954f4ba61 - Update to 1.85.1 2017-05-23 01:38:28 +00:00
Mark Linimon
197f08abf4 Mark some ports failing on power64. In cases where the error message 
was a stub, provide a real one.

While here, pet portlint.

Approved by:	portmgr (tier-2 blanket)
Reported by:	swills
 2017-05-22 22:29:17 +00:00
Sunpoet Po-Chuan Hsieh
fe449dde2c Update to 1.8.2 
Changes:	https://code.zmaw.de/news/375
 2017-05-22 17:17:59 +00:00
Sunpoet Po-Chuan Hsieh
c255bde5ef Update to 2.2.25 
- Add LICENSE

Changes:	https://github.com/Unidata/UDUNITS-2/blob/master/CHANGE_LOG
 2017-05-20 21:50:06 +00:00
Mark Linimon
73a2d70934 Mark some ports failing on power64. In cases where the error message 
was a stub, provide a real one.

While here, pet portlint.

Approved by:	portmgr (tier-2 blanket)
Reported by:	swills
 2017-05-20 12:02:07 +00:00
Thierry Thomas
534c623dbd Switch to wxgtk30. 
PR:		219300
 2017-05-19 18:06:48 +00:00