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freebsd-ports/biology/stringtie/files/patch-samtools-0.1.18_Makefile
Yuri Victorovich 9f819d30ba New port: biology/stringtie: Transcript assembly and quantification for RNA-seq
PR:		229480
Submitted by:	Motomichi Matsuzaki <mzaki@niid.go.jp>
2018-07-11 21:32:39 +00:00

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--- samtools-0.1.18/Makefile.orig 2018-03-06 16:29:49 UTC
+++ samtools-0.1.18/Makefile
@@ -1,5 +1,5 @@
-CC= gcc
-CFLAGS= -g -Wall -fsigned-char -O2 #-m64 #-arch ppc
+CC?= gcc
+CFLAGS?= -g -Wall -fsigned-char -O2 #-m64 #-arch ppc
DFLAGS= -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=0 #-D_USE_KNETFILE
KNETFILE_O= knetfile.o
LOBJS= bgzf.o kstring.o bam_aux.o bam.o bam_import.o sam.o bam_index.o \