Rene Ladan 66fee90926 KDE3 and QT3 expired on 2013-07-01, remove these ports. ... Unfortunately, this also affects some ports using QT3 as a GUI toolkit. Changes to infrastructure files: - bsd.kde.mk : obsolete, remove - bsd.qt.mk : note that a CONFLICTS_BUILD line can probably go after a while - CHANGES : document the removals from bsd.port.mk - KNOBS : remove KDE and QT (KDE4 and QT4 should be used instead) - MOVED : add the removed ports PR: ports/180745 Submitted by: rene Approved by: portmgr (bapt) Exp-run by: bapt		2013-07-26 19:19:20 +00:00
..
adun	- reset MAINTAINER	2012-06-26 05:44:19 +00:00
ariadne	. NOPORTDOCS -> PORT_OPTIONS:MDOCS;	2013-06-19 14:10:02 +00:00
artemis	Decommissioning java 1.5 (EOLed since October 2009):	2012-12-10 11:25:27 +00:00
avida	- Fix build with clang	2013-06-04 08:26:03 +00:00
babel	. NOPORTDOCS -> PORT_OPTIONS:MDOCS;	2013-06-19 19:01:47 +00:00
biococoa	- cleanup comments	2012-10-13 13:39:56 +00:00
biojava	Remove hardcoded extract dependency on diablo-jdk16, directly use USE_ZIP	2012-12-11 07:26:38 +00:00
blast	- Take maintainership	2012-10-01 14:55:55 +00:00
blat	. remove pkg-plist (along with the previous commit).	2013-06-19 18:44:32 +00:00
boinc-simap	Use bsd.port.options.mk instead of bsd.port.{pre|post}.mk	2013-04-29 12:20:35 +00:00
chemeq	. NOPORTDOCS -> PORT_OPTIONS:MDOCS;	2013-06-19 20:01:30 +00:00
clustalw
consed
crux	- adoption of optionsNG	2013-03-18 06:48:55 +00:00
dotter	- Mark broken checksum mismatch	2013-03-25 01:41:31 +00:00
embassy	Convert from USE_MOTIF to USES=motif	2013-07-09 21:49:35 +00:00
emboss	Convert from USE_MOTIF to USES=motif	2013-07-09 21:49:35 +00:00
fasta	Fix some PORT_OPTIONS conversions	2013-06-30 20:53:06 +00:00
fasta3	- Update to 36.3.6	2013-07-19 14:08:02 +00:00
fastdnaml	. NOPORTDOCS -> PORT_OPTIONS:MDOCS;	2013-06-19 13:35:55 +00:00
finchtv	- Reassign to the heap at maintainer's request	2012-10-01 14:45:16 +00:00
fluctuate	. NOPORTDOCS -> PORT_OPTIONS:MDOCS;	2013-06-19 12:43:28 +00:00
garlic	Fix typos in COMMENT	2012-07-25 06:32:06 +00:00
genpak	- update png to 1.5.10	2012-06-01 05:26:28 +00:00
gff2ps	. NOPORTDOCS -> PORT_OPTIONS:MDOCS;	2013-06-19 18:56:37 +00:00
gmap
gperiodic	. NOPORTDOCS -> PORT_OPTIONS:MDOCS;	2013-06-19 19:05:47 +00:00
grappa
hmmer	- Update to 3.0	2013-07-20 15:08:45 +00:00
iolib	- Update to 7.31.0	2013-07-11 16:26:26 +00:00
jalview	Decommissioning java 1.5 (EOLed since October 2009):	2012-12-10 11:25:27 +00:00
lagan	- Update to version 2.0	2012-11-15 07:04:29 +00:00
lamarc	. trim Makefile headers;	2013-06-19 15:39:18 +00:00
libgenome	. add license (GPLv2);	2013-06-19 18:53:54 +00:00
libsbml	- adoption of optionsNG	2013-03-18 06:50:12 +00:00
linux-foldingathome
mafft	Mark as broken on sparc64: depends on thread-local storage, which is not	2012-09-08 08:30:39 +00:00
mapm3
migrate	- Update to 3.5.1	2013-05-26 07:49:47 +00:00
molden	- Update to 5.0.6	2013-04-26 06:57:37 +00:00
mopac	. NOPORTEXAMPLES -> PORT_OPTIONS:MEXAMPLES;	2013-06-19 18:38:46 +00:00
mrbayes
mummer
muscle	Fix typos in COMMENT	2012-07-24 07:19:21 +00:00
ncbi-toolkit	Convert from USE_MOTIF to USES=motif	2013-07-09 21:49:35 +00:00
njplot	Convert from USE_MOTIF to USES=motif	2013-07-10 07:33:24 +00:00
ortep3	. introdice optionsNG to the port;	2013-06-19 20:06:59 +00:00
p5-AcePerl	- Convert all remaining instances of BUILD_DEPENDS=${RUN_DEPENDS} or	2012-06-10 18:42:48 +00:00
p5-Bio-ASN1-EntrezGene
p5-Bio-Das	Cleanup supporting perl version 5.8 and 5.10,	2012-12-17 15:39:36 +00:00
p5-Bio-Das-Lite
p5-Bio-GFF3	- Update to 1.5	2012-12-16 04:22:15 +00:00
p5-Bio-Glite	For perl@ owned ports:	2013-03-29 00:44:53 +00:00
p5-Bio-Graphics	- Update to 2.37	2013-07-20 10:03:10 +00:00
p5-Bio-MAGETAB	For perl@ owned ports:	2013-03-29 00:44:53 +00:00
p5-Bio-NEXUS	For perl@ owned ports:	2013-03-29 00:44:53 +00:00
p5-Bio-Phylo	- Update to 0.56	2013-07-20 10:04:32 +00:00
p5-Bio-SCF	- Trim Makefile headers	2013-06-01 14:22:35 +00:00
p5-bioperl	- Avoid of using SITE_PERL	2013-06-07 06:51:42 +00:00
p5-bioperl-run	- Remove SITE_PERL from *_DEPENDS	2012-06-30 14:53:22 +00:00
paml	- Trim Makefile headers	2013-06-01 14:22:35 +00:00
phd2fasta	Remove unneeded escaping	2013-04-26 16:23:13 +00:00
phrap
phred
phylip	Fix some screw ups introduced in r319847.	2013-06-24 18:09:52 +00:00
phyml	- Update to 20121109.	2013-02-04 10:07:30 +00:00
platon
plink	Add new ports biology/plink [1] and biology/plinkseq [2]:	2012-09-27 09:59:25 +00:00
plinkseq	Fix build with protobuf-2.5.0	2013-03-21 14:09:22 +00:00
povchem	- remove empty files	2013-02-15 08:57:19 +00:00
primer3	- Take maintainership	2012-10-01 14:55:55 +00:00
protomol	- adoption of optionsNG	2013-03-18 06:54:39 +00:00
psi88	. NOPORTDOCS -> PORT_OPTIONS:MDOCS;	2013-06-19 19:54:13 +00:00
py-biopython	- update to 1.60	2012-09-25 08:06:42 +00:00
pycogent	- Update to 1.5.3	2012-10-08 03:17:02 +00:00
pyfasta	- Trim Makefile headers	2013-06-01 14:22:35 +00:00
pymol	Switch from libglut to freeglut and retire libglut. Libglut hasn't been	2012-08-04 22:52:02 +00:00
python-nexus
rasmol	Convert to USES=imake	2013-06-28 18:32:25 +00:00
recombine	. NOPORTDOCS -> PORT_OPTIONS:MDOCS;	2013-06-19 19:15:14 +00:00
ruby-bio	- adoption of optionsNG	2013-03-18 06:55:42 +00:00
seaview	- Update to 4.4.2	2013-07-15 14:49:02 +00:00
seqan	- convert USE_CMAKE to USES	2013-03-22 20:06:14 +00:00
seqio	Remove stale (since r321246) pkg-plist file.	2013-06-19 21:04:36 +00:00
sim4	. add license (GPLv2);	2013-06-19 16:36:53 +00:00
ssaha	- Reassign to the heap at maintainer's request	2012-10-01 14:45:16 +00:00
t_coffee	- Update to 9.03.	2013-01-14 08:04:38 +00:00
tinker	- Update to 6.2.06	2013-07-15 14:50:22 +00:00
treepuzzle
treeviewx	- Reassign to the heap at maintainer's request	2012-10-01 14:45:16 +00:00
tRNAscan-SE	. NOPORTDOCS -> PORT_OPTIONS:MDOCS;	2013-06-19 19:20:25 +00:00
ugene	Unbreak on 7.X and i386 systems.	2013-02-25 13:00:15 +00:00
velvet
wise	Fix build by adding an explicit dep on pkgconf	2013-05-03 20:48:34 +00:00
xmolwt	Use optionsNG for DOCS.	2013-06-19 19:07:35 +00:00
Makefile	KDE3 and QT3 expired on 2013-07-01, remove these ports.	2013-07-26 19:19:20 +00:00