Po-Chuan Hsieh d0c27ebad6 devel/grpc: Update to 1.42.0 ... Changes: https://github.com/grpc/grpc/releases		2021-12-22 02:46:21 +08:00
..
abyss
ad2vcf	biology/ad2vcf: Update to 0.1.4	2021-12-14 13:45:31 -06:00
artemis
avida
babel	*/*: Remove redundant '-*' from CONFLICTS definitions	2021-11-25 22:40:11 +01:00
bamtools	devel/jsoncpp: Update to 1.9.4 -> 1.9.5	2021-11-05 12:09:19 -07:00
bamutil
bbmap
bcftools	biology/bcftools: Update to 1.14	2021-12-18 11:56:51 -06:00
bedtools
bfc
bio-mocha	bio-mocha: Build plugin against bcftools 1.14, the current port	2021-12-21 10:17:11 -06:00
bioawk
biococoa
biolibc	biology/biolibc: Update to 0.2.1	2021-12-14 13:45:31 -06:00
biolibc-tools	biology/biolibc-tools: Update to 0.1.1	2021-12-14 13:45:32 -06:00
bioparser
biosig
biosoup
biostar-tools	biology/biostar-tools: Allow package build on non-amd64 systems	2021-12-01 09:49:28 -06:00
bolt-lmm
bowtie	biology/bowtie: enable on riscv64	2021-12-15 13:55:57 +01:00
bowtie2
bwa	biology/bwa: don't use GCC on powerpc64le	2021-12-01 17:34:18 +00:00
canu	biology/canu: fix CATEGORIES	2021-12-20 12:59:13 +00:00
cd-hit	biology/cd-hit: fix build on armv7	2021-11-21 13:26:44 +00:00
cdbfasta
checkm
clustal-omega
clustalw
cufflinks	devel/automake: update to 1.16.5	2021-12-12 19:46:22 +01:00
cytoscape
ddocent
diamond	biology/diamond: Update to 2.0.13	2021-11-11 13:17:24 -04:00
dsr-pdb
edlib
emboss
erminej
exonerate
fasta
fasta3
fastahack
fastdnaml
fastool
fastp
fastqc
fasttree
fastx-toolkit
figtree
flash
fluctuate
freebayes	biology/freebayes: enable on riscv64	2021-12-17 14:26:57 +01:00
garlic
gatk
gcta
gemma
generand
gff2ps
gffread	biology/gffread: GFF/GTF format conversions, filtering, FASTA extraction, etc	2021-11-10 14:49:10 -06:00
gmap
gperiodic
graphlan
groopm
haplohseq
hhsuite	biology/hhsuite: fix packaging on powerpc	2021-11-16 12:03:42 +00:00
hisat2	biology/hisat2: enable on riscv64	2021-12-16 22:38:56 +01:00
hmmer
htslib	biology/htslib: Update to 1.14	2021-12-18 11:56:50 -06:00
hyphy	biology/hyphy: Update to 2.5.33	2021-11-17 07:51:41 -04:00
igv
infernal
iolib
iqtree
jalview
jellyfish
kallisto
lamarc
libbigwig
libgff	biology/libgff: GFF/GTF parsing library based on GCLib	2021-12-05 14:50:42 -06:00
libgtextutils
libneurosim
libnuml
libsbml	biology/libsbml: Fix build with Python 3.10	2021-11-02 05:28:40 +08:00
libsedml
linux-foldingathome
mafft
mapm3
migrate
minimap2	biology/minimap2: Unbreak on i386 by resotring -msse flags	2021-12-03 11:22:37 -06:00
mmseqs2
molden
mopac
mothur
mrbayes
mummer
muscle
ncbi-blast+	devel/grpc: Update to 1.42.0	2021-12-22 02:46:21 +08:00
ncbi-cxx-toolkit
ncbi-entrez-direct
ncbi-toolkit
ncbi-vdb
ngs-sdk
p5-AcePerl
p5-Bio-ASN1-EntrezGene
p5-Bio-Cluster
p5-Bio-Coordinate
p5-Bio-Das
p5-Bio-Das-Lite
p5-Bio-DB-EMBL
p5-Bio-DB-NCBIHelper
p5-Bio-FeatureIO
p5-Bio-GFF3
p5-Bio-Glite
p5-Bio-Graphics
p5-Bio-MAGETAB
p5-Bio-NEXUS
p5-Bio-Phylo
p5-Bio-SCF
p5-Bio-Variation
p5-BioPerl
p5-BioPerl-Run
p5-transdecoder
p5-TrimGalore
paml
pbbam
pbseqan
peak-classifier	biology/peak-classifier: Update to 0.1.2	2021-12-14 13:45:32 -06:00
pear-merger
phrap
phred
phyml	devel/automake: update to 1.16.5	2021-12-12 19:46:22 +01:00
picard-tools
plink
pooler
primer3
prodigal
prodigy-lig
protomol
psi88
py-biom-format
py-biopython
py-bx-python	biology/py-bx-python: Update 0.8.11-6 -> 0.8.13	2021-12-21 01:03:57 -08:00
py-crossmap
py-cutadapt
py-deeptools
py-deeptoolsintervals
py-dnaio
py-ete3
py-Genesis-PyAPI
py-gffutils
py-goatools
py-gtfparse
py-hits
py-libnuml	biology/py-libnuml: fix install with python 3.10+	2021-11-02 21:08:32 +03:00
py-libsedml	biology/py-libsedml: fix install with python 3.10+	2021-11-02 21:08:31 +03:00
py-loompy
py-macs2
py-multiqc
py-ont-fast5-api
py-orange3-bioinformatics
py-orange3-single-cell
py-pandas-charm
py-py2bit
py-pybigwig
py-pyfaidx
py-pysam	biology/py-pysam: Update 0.16.0.1 -> 0.18.0	2021-12-19 23:48:52 -08:00
py-PySCeS
py-python-libsbml	biology/py-python-libsbml: limit supported python versions, fix build	2021-11-03 21:26:41 +03:00
py-pywgsim
py-resdk	biology/py-resdk: Update 13.6.0 -> 13.7.0	2021-11-17 22:33:39 -08:00
py-scikit-bio
py-xenaPython
pyfasta
python-nexus
rainbow
rampler
readseq
recombine
ruby-bio
rubygem-bio
rubygem-bio-executables
rubygem-bio-old-biofetch-emulator
rubygem-bio-shell	biology/rubygem-bio-shell: Update to 1.0.1	2021-11-22 02:21:58 +08:00
sam2pairwise
samtools	biology/samtools: Update to 1.14	2021-12-18 11:56:51 -06:00
scrm
seaview	biology/seaview: Update version 5.0.4=>5.0.5	2021-12-05 19:02:42 -06:00
seqan
seqan1
seqan3	biology/seqan3: Update 3.0.3 -> 3.1.0	2021-11-14 21:18:53 -08:00
seqan-apps
seqio
seqkit	biology/seqkit: Update 2.0.1 -> 2.1.0	2021-11-16 10:57:47 -08:00
seqtk	biology/seqtk: Update to 1.3	2021-12-18 13:37:06 -06:00
sigviewer
sim4
slclust
smithwaterman
snpeff
spoa
sra-tools
stacks
star	biology/star: Update to 2.7.9a	2021-11-26 15:57:02 -06:00
stringtie
subread
tabixpp
taxonkit	biology/taxonkit: Update 0.8.0 -> 0.9.0	2021-12-02 12:57:06 -08:00
treekin
treepuzzle
trimadap
trimmomatic
tRNAscan-SE
ucsc-userapps
ugene
unikmer
vcf2hap	biology/vcf2hap: Update to 0.1.4	2021-12-14 13:45:32 -06:00
vcf-split	biology/vcf-split: Update to 0.1.3.3	2021-12-14 13:45:32 -06:00
vcflib	biology/vcflib: unbreak on riscv64	2021-12-16 22:49:25 +01:00
vcftools
velvet
viennarna
vsearch
vt
wise
Makefile	biology/libgff: GFF/GTF parsing library based on GCLib	2021-12-05 14:50:42 -06:00