Martin Wilke 856c865e68 - Update to 4.2 ... PR: 129895 Submitted by: Wen Heping <wenheping@gmail.com> (maintainer)		2008-12-25 19:56:07 +00:00
..
adun	- update PORTSCOUT	2008-08-12 17:13:44 +00:00
ariadne
artemis
avida	- Update to 2.8.1	2008-10-23 14:13:37 +00:00
babel
belvu
biococoa
biojava	Reset nemoliu due to maintainer-timeouts and no response to email.	2008-12-08 06:43:50 +00:00
blast
blat	- Remove USE_GCC where it can be satisfied with base compiler on following	2008-07-25 14:34:52 +00:00
boinc-simap
chemeq
clustalw
consed
crimap
distribfold
dna-qc
dotter
embassy
emboss
fasta
fasta3
fastdnaml
finchtv
fluctuate
garlic
genpak	- Remove duplicates from MAKE_ENV after inclusion of CC and CXX in default MAKE_ENV	2008-07-25 09:08:42 +00:00
gff2ps
gmap	Update CONFIGURE_ARGS for how we pass CONFIGURE_TARGET to configure script.	2008-08-21 06:18:49 +00:00
gperiodic
grappa
hmmer
jalview
kinemage
L-Breeder
lagan	- Remove duplicates from MAKE_ENV after inclusion of CC and CXX in default MAKE_ENV	2008-07-25 09:08:42 +00:00
lamarc	- Update to 2.1.3	2008-07-31 16:18:42 +00:00
libgenome	Update CONFIGURE_ARGS for how we pass CONFIGURE_TARGET to configure script.	2008-08-21 06:18:49 +00:00
linux-foldingathome
lsysexp
mafft
mapm3
migrate
molden	- Roll back to 4.6 as 4.7 is the development version and is constantly being	2008-11-11 02:21:28 +00:00
mopac	Add -lf2c, this is the correct dependency. Bump portrevision.	2008-08-22 22:20:05 +00:00
mrbayes
mummer
muscle
ncbi-toolkit
njplot
ortep3
p5-AcePerl	Update to 1.92	2008-12-24 08:23:14 +00:00
p5-Bio-ASN1-EntrezGene
p5-Bio-Das	- update to 1.10	2008-12-11 05:19:12 +00:00
p5-Bio-Phylo
p5-bioperl
p5-bioperl-devel	- Unbreak	2008-10-21 15:24:46 +00:00
p5-bioperl-run
p5-bioperl-run-devel	- Mark as broken	2008-12-16 16:13:11 +00:00
paml	- Update to 4.2	2008-12-25 19:56:07 +00:00
phd2fasta
phrap
phred
phylip	- Fix build	2008-08-27 16:21:06 +00:00
platon
povchem
primer3
protomol	- Remove USE_GCC where it can be satisfied with base compiler on following	2008-07-25 14:34:52 +00:00
psi88
py-biopython	- Update to 1.48	2008-10-11 15:26:33 +00:00
pymol
rasmol
recombine
ruby-bio
seaview
seqio	- respect NOPORTEXAMPLES/NOPORTDOCS and fix plist	2008-07-12 06:28:25 +00:00
sim4
ssaha
t_coffee	- Respect PORTDOCS/PORTEXAMPLES	2008-09-09 13:43:15 +00:00
tinker
treepuzzle	Update CONFIGURE_ARGS for how we pass CONFIGURE_TARGET to configure script.	2008-08-21 06:18:49 +00:00
treeviewx
tRNAscan-SE
wise
xdrawchem	Update CONFIGURE_ARGS for how we pass CONFIGURE_TARGET to configure script.	2008-08-21 06:18:49 +00:00
xmolwt
Makefile	- Delete biology/nab port after being marked DEPRECATED for three months	2008-07-24 12:17:12 +00:00