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mirror of https://git.FreeBSD.org/ports.git synced 2024-12-14 03:10:47 +00:00
freebsd-ports/biology
Gabor Kovesdan 7a850f3a0c - MASTER_SITE is back, remove BROKEN
PR:		ports/109954
Submitted by:	Tsurutani Naoki <turutani@scphys.kyoto-u.ac.jp>
2007-03-16 21:16:36 +00:00
..
adun - mark ignore on FreeBSD 5.x 2007-02-19 03:39:29 +00:00
ariadne
artemis
avida
babel
belvu - Release distfile was renamed. 2007-03-08 13:17:26 +00:00
biococoa - add category gnustep 2007-01-31 18:18:14 +00:00
biojava Schedule these broken ports for removal on 2007-04-10 if they are still 2007-02-11 01:23:35 +00:00
blast
blat
boinc-simap - Add hmmer 5.09 application 2006-10-10 11:31:42 +00:00
chemeq
clustalw Reset dbader@eece.unm.edu due to maintainer-timeout. While here, fix fetch. 2007-03-11 03:20:27 +00:00
crimap Reset tonymaher@optusnet.com.au due to maintainer-timeouts and no response 2006-12-26 12:46:34 +00:00
distribfold
dna-qc Reset tonymaher@optusnet.com.au due to maintainer-timeouts and no response 2006-12-26 12:46:34 +00:00
dotter
embassy
emboss
fasta
fasta3 - Update to 34.26.2 2007-03-09 11:26:13 +00:00
fastdnaml
finchtv
fluctuate Fix master site and un-deprecate 2007-01-25 11:01:25 +00:00
garlic
genpak
gff2ps Reset chuynh@biolateral.com.au: address bounces. 2007-03-10 20:20:10 +00:00
gmap Add gmap 2006.04.21, a Genomic Mapping and Alignment Program for mRNA 2006-09-29 04:05:55 +00:00
gperiodic Chase the GNOME X11BASE to LOCALBASE move, and fix the build with the 2006-10-14 08:54:54 +00:00
grappa Reset dbader@ece.unm.edu due to timeouts and no response to email. 2006-12-13 13:20:20 +00:00
hmmer
jalview
kinemage - Respect X11BASE 2006-11-27 22:03:22 +00:00
L-Breeder - Use features of bsd.wx.mk, especially USE_WX 2006-12-01 07:39:02 +00:00
lagan
lamarc Get rid of biology/coalesce dependency, it is deprecated and will be removed 2007-01-25 11:10:43 +00:00
libgenome Use libtool port instead of included version to avoid objformat a.out botch 2007-02-01 02:42:05 +00:00
linux-foldingathome
lsysexp
mafft
migrate - Update to 2.1.3 2006-12-10 12:39:32 +00:00
molden - Fix typo 2007-01-23 13:05:24 +00:00
mopac
nab - Update to 5.1.2 2006-12-23 21:45:17 +00:00
ncbi-toolkit - Respect X11BASE 2006-12-09 07:49:55 +00:00
ortep3 Fix build. 2007-01-19 06:41:03 +00:00
p5-AcePerl - Mark broken on amd64 < 6. We got following 2006-12-04 04:13:30 +00:00
p5-Bio-ASN1-EntrezGene
p5-Bio-Das Reset razi@genet.sickkids.on.ca due to maintainer-timeouts and no response to 2007-03-14 08:18:21 +00:00
p5-Bio-Phylo Update to v0.15 2006-12-27 18:58:26 +00:00
p5-bioperl
p5-bioperl-devel
p5-bioperl-run
p5-bioperl-run-devel
paml Reset dbader@eece.unm.edu due to maintainer-timeouts. 2007-03-11 03:21:18 +00:00
phylip Update to 3.66 2007-01-27 21:23:52 +00:00
platon * Migrate to gfortran. 2007-01-17 05:30:10 +00:00
povchem
primer3 - Update to 1.0.1 2006-12-29 23:40:53 +00:00
protomol
psi88 Build fix. 2007-01-29 02:13:52 +00:00
py-biopython - Update to 1.42 2006-10-31 13:25:21 +00:00
pymol Update to 0.99rc6. 2007-02-09 00:11:54 +00:00
rasmol
recombine Fix master sites, un-deprecate and update biology/recombine to 1.41. 2007-01-25 12:22:50 +00:00
ruby-bio
seaview Chase pdf library and bump PORTREVISION. 2006-10-09 08:18:35 +00:00
seqio Reset tonymaher@optusnet.com.au due to maintainer-timeouts and no response 2006-12-26 12:46:34 +00:00
sim4
t_coffee - Update to 4.96 2007-03-09 11:26:16 +00:00
tinker - MASTER_SITE is back, remove BROKEN 2007-03-16 21:16:36 +00:00
treepuzzle
treeviewx - Allow wxWidgets 2.6 alongside 2.4, this port works with both 2006-10-09 07:16:37 +00:00
tRNAscan-SE Reset chuynh@biolateral.com.au: address bounces. 2007-03-10 20:20:10 +00:00
wise Reset tonymaher@optusnet.com.au due to maintainer-timeouts and no response 2006-12-26 12:46:34 +00:00
xdrawchem
xmolwt
Makefile Remove expired leaf port: 2007-01-25 11:25:40 +00:00