Thierry Thomas dd746cb883 - Upgrade to the latest beta and unbreak; ... - Add a regression-test target; - Fix plist for WITHOUT_SAMPLES. PR: ports/104685 Approved by: maintainer's time-out (1 month)		2006-11-21 22:35:28 +00:00
..
adun	- cleanup patches	2006-11-12 16:59:53 +00:00
ariadne	Remove USE_REINPLACE from all categories starting with B	2006-05-03 23:26:35 +00:00
artemis	- Fix fetch problems	2005-12-05 16:57:26 +00:00
avida	Mark as broken for i386 4.x	2006-08-10 23:02:49 +00:00
babel	- Add SHA256	2005-11-24 00:04:00 +00:00
belvu	Distfile now checksums successfully.	2006-10-14 16:13:49 +00:00
biojava	- Upgrade to the latest beta and unbreak;	2006-11-21 22:35:28 +00:00
blast	- Update PORTREVISION to match latest release (see main web site)	2006-06-11 09:13:43 +00:00
blat	Add blat 33, a fast tool for local sequence similarity searches.	2006-03-15 10:26:12 +00:00
boinc-simap	- Add hmmer 5.09 application	2006-10-10 11:31:42 +00:00
chemeq	- Resurrect, update to version 1.5 (literally 1.50 since I wanted to avoid	2006-01-19 19:47:59 +00:00
clustalw	SHA256ify	2006-01-22 08:34:46 +00:00
coalesce	- Add SHA256	2005-11-24 00:04:00 +00:00
crimap	Remove USE_REINPLACE from all categories starting with B	2006-05-03 23:26:35 +00:00
distribfold	USE_SIZE was obsoleted in rev. 1.484 of bsd.port.mk more than	2006-06-11 15:29:01 +00:00
dna-qc	Remove USE_REINPLACE from all categories starting with B	2006-05-03 23:26:35 +00:00
dotter	Unmark BROKEN, it seems to be caused by a stale distfile on ftp-master.	2006-08-03 20:28:00 +00:00
embassy	For EMBOSS:	2006-03-31 09:43:21 +00:00
emboss	For EMBOSS:	2006-03-31 09:43:21 +00:00
fasta	Update to 21.u1.d1 (fixes fetch).	2006-05-07 13:04:20 +00:00
fasta3	- Update to 34.t26.b3	2006-10-31 09:02:04 +00:00
fastdnaml	- Add SHA256	2005-11-24 00:04:00 +00:00
finchtv	SHA256ify	2006-01-22 08:34:46 +00:00
fluctuate	- Add SHA256	2005-11-24 00:04:00 +00:00
garlic	Remove USE_REINPLACE from all categories starting with B	2006-05-03 23:26:35 +00:00
genpak	- Add SHA256	2005-11-24 00:04:00 +00:00
gff2ps	- Update to 0.98d	2006-10-06 04:12:59 +00:00
gmap	Add gmap 2006.04.21, a Genomic Mapping and Alignment Program for mRNA	2006-09-29 04:05:55 +00:00
gperiodic	Chase the GNOME X11BASE to LOCALBASE move, and fix the build with the	2006-10-14 08:54:54 +00:00
grappa	Remove USE_REINPLACE from all categories starting with B	2006-05-03 23:26:35 +00:00
hmmer	SHA256ify	2006-01-22 08:34:46 +00:00
jalview	Jalview is a multiple alignment editor written in Java. It is used widely in a	2006-02-13 09:42:13 +00:00
kinemage	Reset jeremy@external.org who has not responded to email asking about	2006-04-05 05:46:33 +00:00
L-Breeder	Remove USE_REINPLACE from all categories starting with B	2006-05-03 23:26:35 +00:00
lagan	Add lagan 1.2, efficient tools for large-scale multiple alignments of	2006-03-16 22:31:26 +00:00
lamarc
libgenome	- s,INSTALLS_SHLIB,USE_LDCONFIG,g	2006-08-14 10:08:25 +00:00
linux-foldingathome	Folding@Home is a distributed computing project -- people from through out the	2006-08-28 22:33:45 +00:00
lsysexp	- Add MASTER_SITE	2006-06-06 10:07:55 +00:00
mafft	- Update to 5.743	2006-03-19 12:59:16 +00:00
migrate	Remove USE_REINPLACE from all categories starting with B	2006-05-03 23:26:35 +00:00
molden	Unbreak: molden has been updated on Aug 17, with the same DISTNAME.	2006-09-17 13:41:56 +00:00
mopac	- Fix pkg-plist [1]	2006-07-10 05:32:58 +00:00
nab	SHA256ify	2006-01-22 08:34:46 +00:00
ncbi-toolkit	Update biology/ncbi-toolkit to the latest release.	2006-06-06 12:05:19 +00:00
ortep3	Reset rmiya@cc.hirosaki-u.ac.jp who has not responded to email asking about	2006-04-05 06:13:46 +00:00
p5-AcePerl	- Update to 1.89	2006-05-02 23:16:02 +00:00
p5-Bio-ASN1-EntrezGene	SHA256ify	2006-01-22 08:34:46 +00:00
p5-Bio-Das	SHA256ify	2006-01-22 08:34:46 +00:00
p5-Bio-Phylo	- Updated from 0.07 to 0.12	2006-05-19 23:18:32 +00:00
p5-bioperl	SHA256ify	2006-01-22 08:34:46 +00:00
p5-bioperl-devel	Replace ugly "@unexec rmdir %D... 2>/dev/null || true" with @dirrmtry	2006-01-22 01:29:46 +00:00
p5-bioperl-run	Bioperl-run contain modules that provides a PERL interface to various	2006-05-02 21:30:08 +00:00
p5-bioperl-run-devel	Bioperl-run contain modules that provides a PERL interface to various	2006-05-02 21:31:43 +00:00
paml	- Update to 3.15	2006-05-20 18:52:19 +00:00
phylip	Put PORTEPOCH back.	2006-02-09 01:17:59 +00:00
platon	- Satisfy portlint	2006-05-06 21:20:59 +00:00
povchem	Remove USE_REINPLACE from all categories starting with B	2006-05-03 23:26:35 +00:00
primer3	Remove USE_REINPLACE from all categories starting with B	2006-05-03 23:26:35 +00:00
protomol	Add protomol 2.0.3, OO, component based, framework for molecular	2006-05-05 20:09:54 +00:00
psi88	Reset rmiya@cc.hirosaki-u.ac.jp who has not responded to email asking about	2006-04-05 06:13:46 +00:00
py-biopython	- Update to 1.42	2006-10-31 13:25:21 +00:00
pymol	Fix build on amd64	2006-09-17 11:51:56 +00:00
rasmol	- Add SHA256	2005-11-24 00:04:00 +00:00
recombine	- Add SHA256	2005-11-24 00:04:00 +00:00
ruby-bio	- Update to 1.0.0	2006-04-25 22:09:29 +00:00
seaview	Chase pdf library and bump PORTREVISION.	2006-10-09 08:18:35 +00:00
seqio	SHA256ify	2006-01-22 08:34:46 +00:00
sim4	Remove USE_REINPLACE from all categories starting with B	2006-05-03 23:26:35 +00:00
t_coffee	Update to 3.27.	2006-02-10 09:45:28 +00:00
tinker	Remove USE_REINPLACE from all categories starting with B	2006-05-03 23:26:35 +00:00
treepuzzle	SHA256ify	2006-01-22 08:34:46 +00:00
treeviewx	- Allow wxWidgets 2.6 alongside 2.4, this port works with both	2006-10-09 07:16:37 +00:00
tRNAscan-SE	SHA256ify	2006-01-22 08:34:46 +00:00
wise	Remove USE_REINPLACE from all categories starting with B	2006-05-03 23:26:35 +00:00
xdrawchem	Mark as BROKEN on sparc64 due to internal compiler error.	2006-07-03 22:22:09 +00:00
xmolwt	Reset rmiya@cc.hirosaki-u.ac.jp who has not responded to email asking about	2006-04-05 06:13:46 +00:00
Makefile	Adun is a new extendible molecular simulation program that also	2006-11-09 20:16:54 +00:00