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mirror of https://git.FreeBSD.org/ports.git synced 2024-11-29 01:13:08 +00:00
freebsd-ports/science
Martin Wilke b5281c7e1f Jmol is a Java molecular viewer for
three-dimensional chemical structures.
Features include reading a variety
of file types and output from quantum
chemistry programs, and animation of
multi-frame files and computed normal
modes from quantum programs.

WWW:  http://sourceforge.net/projects/jmol/

PR:		ports/123631
Submitted by:	Wen heping <wenheping at gmail.com>
2008-05-17 23:04:44 +00:00
..
2dhf
abinit Switch autoconf dependencies from 2.53 or 2.59 to 2.61. 2007-09-30 04:47:36 +00:00
afni - Remove unneeded dependency from gtk12/gtk20 [1] 2008-04-19 17:56:05 +00:00
at
bblimage - Remove USE_XLIB/USE_X_PREFIX/USE_XPM in favor of USE_XORG 2008-03-25 22:44:48 +00:00
bft Upgrade Code_Saturne to 1.3.2. 2008-04-30 22:14:12 +00:00
bodr - Update to 8 2008-03-14 12:12:33 +00:00
buddy - Remove unneeded dependency from gtk12/gtk20 [1] 2008-04-19 17:56:05 +00:00
cdcl - Remove USE_XLIB/USE_X_PREFIX/USE_XPM in favor of USE_XORG 2008-03-24 17:02:27 +00:00
cdf Upgrade to 3.2. 2007-12-11 21:08:51 +00:00
cdo - Update to 1.1.1 2008-04-12 01:35:21 +00:00
cgnslib Upgrade to 2.5-3. 2008-04-06 19:52:42 +00:00
chemical-mime-data
chemtool Switch autoconf dependencies from 2.53 or 2.59 to 2.61. 2007-09-30 04:47:36 +00:00
chemtool-devel
clhep - Update to 2.0.3.3 2008-05-17 21:27:30 +00:00
colt - Fix fetch 2008-05-12 07:14:22 +00:00
crf++ - Update to 0.50 2007-12-25 08:12:42 +00:00
dcl - Remove USE_XLIB/USE_X_PREFIX/USE_XPM in favor of USE_XORG 2008-03-24 23:21:25 +00:00
devisor
dft++
dtiquery - Remove unneeded dependency from gtk12/gtk20 [1] 2008-04-19 17:56:05 +00:00
ecs Upgrade Code_Saturne to 1.3.2. 2008-04-30 22:14:12 +00:00
elmer-eio - Update MASTER_SITES. 2008-03-14 11:04:09 +00:00
elmer-fem - Move from versioned tcl/tk CATEGORIES to simple tcl and tk categories 2008-04-09 13:42:26 +00:00
elmer-hutiter - Update MASTER_SITES. 2008-03-14 11:04:09 +00:00
elmer-matc - Update MASTER_SITES. 2008-03-14 11:04:09 +00:00
elmer-meshgen2d - Update MASTER_SITES. 2008-03-14 11:04:09 +00:00
elmerfront - Update MASTER_SITES. 2008-03-14 11:04:09 +00:00
elmergrid - Update MASTER_SITES. 2008-03-14 11:04:09 +00:00
elmerpost - Update MASTER_SITES. 2008-03-14 11:04:09 +00:00
euler
fastcap
fasthenry
felt - Remove unneeded dependency from gtk12/gtk20 [1] 2008-04-19 17:56:05 +00:00
flounder - Remove unneeded dependency from gtk12/gtk20 [1] 2008-04-19 17:56:05 +00:00
fvm Upgrade Code_Saturne to 1.3.2. 2008-04-30 22:14:12 +00:00
g3data - Remove USE_XLIB/USE_X_PREFIX/USE_XPM in favor of USE_XORG 2008-03-22 14:48:03 +00:00
gamess Add MANUAL_PACKAGE_BUILD. 2008-01-07 00:21:31 +00:00
gave
gchempaint - Remove USE_XLIB/USE_X_PREFIX/USE_XPM in favor of USE_XORG 2008-03-24 13:03:55 +00:00
gchemutils - Remove USE_XLIB/USE_X_PREFIX/USE_XPM in favor of USE_XORG 2008-03-24 13:03:55 +00:00
gdis
gerris - Remove USE_GETOPT_LONG which is a no-op since March 2007 2008-03-20 10:03:51 +00:00
getdp - Chase the gsl shared lib bump. 2008-04-08 13:53:22 +00:00
ghemical
ghmm
gnudatalanguage Fix configure. 2008-05-12 17:36:25 +00:00
gramps - Remove USE_XLIB/USE_X_PREFIX/USE_XPM in favor of USE_XORG 2008-03-23 16:44:09 +00:00
gromacs - Remove unneeded dependency from gtk12/gtk20 [1] 2008-04-19 17:56:05 +00:00
gsmc - Remove USE_XLIB/USE_X_PREFIX/USE_XPM in favor of USE_XORG 2008-03-23 16:44:09 +00:00
gsystem - Remove unneeded dependency from gtk12/gtk20 [1] 2008-04-19 17:56:05 +00:00
gtamsanalyzer 3 2008-04-29 18:00:11 +00:00
gwyddion - Update to 2.9 2007-12-15 18:19:04 +00:00
hdf Mark as broken on gcc 4.2. 2007-09-30 08:08:51 +00:00
hdf5 - Add mirror. 2008-03-08 09:23:50 +00:00
hdf5-18 - Add mirror. 2008-03-08 09:23:50 +00:00
ics Upgrade Code_Saturne to 1.3.2. 2008-04-30 22:14:12 +00:00
InsightToolkit
isaac-cfd
jmol Jmol is a Java molecular viewer for 2008-05-17 23:04:44 +00:00
kmovisto - Remove unneeded dependency from gtk12/gtk20 [1] 2008-04-19 17:56:05 +00:00
kst - Update to 1.6.0 2008-04-27 05:21:59 +00:00
kst2 - Update to 1.6.0 2008-04-27 05:21:59 +00:00
lamprop - Update to 1.3.2 2008-02-15 20:24:04 +00:00
libctl - Update to 3.03 2008-04-16 10:41:53 +00:00
libghemical Switch autoconf dependencies from 2.53 or 2.59 to 2.61. 2007-09-30 04:47:36 +00:00
libint
liblinear - Update to 1.23 2008-04-06 13:57:38 +00:00
libsvm - Update to 2.85 2007-12-12 02:04:56 +00:00
libsvm-python
linsmith
mayavi - Make Python 2.5.1 the default Python version 2007-07-30 09:42:28 +00:00
mbdyn - Remove patch files as per last PR 2007-10-27 19:00:53 +00:00
mcstas
medit - Remove unneeded dependency from gtk12/gtk20 [1] 2008-04-19 17:56:05 +00:00
minc - Remove unneeded dependency from gtk12/gtk20 [1] 2008-04-19 17:56:05 +00:00
minc2
mpb - Chase libctl version bump 2008-04-16 10:42:58 +00:00
mpqc Fix build on 7.0, and now correctly choose -pthread 2007-11-12 00:41:54 +00:00
mpqc-mpich
ncs Upgrade Code_Saturne to 1.3.2. 2008-04-30 22:14:12 +00:00
netcdf
netcdf4
nifticlib
oases - Remove unneeded dependency from gtk12/gtk20 [1] 2008-04-19 17:56:05 +00:00
omnetpp - Update to 3.3 2008-05-14 12:41:06 +00:00
oof - Remove unneeded dependency from gtk12/gtk20 [1] 2008-04-19 17:56:05 +00:00
openbabel - Update to 2.1.1 2007-08-20 09:05:30 +00:00
openfoam - Remove unneeded dependency from gtk12/gtk20 [1] 2008-04-19 17:56:05 +00:00
ovt - Unbreak 2007-08-24 18:37:06 +00:00
p5-Algorithm-SVMLight - Take advantage of CPAN macro from bsd.sites.mk, change ${MASTER_SITE_PERL_CPAN} to CPAN. 2008-04-17 14:30:31 +00:00
p5-Chemistry-Elements - Take advantage of CPAN macro from bsd.sites.mk, change ${MASTER_SITE_PERL_CPAN} to CPAN. 2008-04-17 14:30:31 +00:00
paje - fix Bundle install 2008-05-07 04:28:38 +00:00
paraview - Remove unneeded dependency from gtk12/gtk20 [1] 2008-04-19 17:56:05 +00:00
pcp Mark as broken with gcc4.2. 2007-09-30 11:02:46 +00:00
pnetcdf - Mark BROKEN on 7.x 2007-12-21 22:01:31 +00:00
psi3 Remove always-false/true conditions based on OSVERSION 500000 2007-10-04 02:24:29 +00:00
py-paida - Make Python 2.5.1 the default Python version 2007-07-30 09:42:28 +00:00
py-scipy - Update to 0.6.0 2008-04-09 02:10:10 +00:00
pyvox - Remove USE_XLIB/USE_X_PREFIX/USE_XPM in favor of USE_XORG 2008-03-25 22:44:48 +00:00
qcl - Remove USE_GETOPT_LONG which is a no-op since March 2007 2008-03-20 10:03:51 +00:00
ruby-dcl - Remove unneeded dependency from gtk12/gtk20 [1] 2008-04-19 17:56:05 +00:00
ruby-gphys - update to 0.6.1 2008-03-27 02:14:57 +00:00
ruby-netcdf - Update to 0.6.3 2008-01-30 08:47:57 +00:00
simlib - Update to 3.0.20071212 2008-04-06 06:35:14 +00:00
svmlight
szip - Remove unneeded dependency from gtk12/gtk20 [1] 2008-04-19 17:56:05 +00:00
udunits
v_sim - Remove unneeded dependency from gtk12/gtk20 [1] 2008-04-19 17:56:05 +00:00
vis5d+ - Convert gzstream, libgfx[1] and qslim to shlibs 2008-05-03 07:45:22 +00:00
vmd - Remove unneeded dependency from gtk12/gtk20 [1] 2008-04-19 17:56:05 +00:00
x11iraf - Remove USE_XLIB/USE_X_PREFIX/USE_XPM in favor of USE_XORG 2008-03-23 16:44:09 +00:00
xloops-ginac - Fix build after math/GiNaC update 2008-04-28 07:53:46 +00:00
xmakemol - Update to 5.16 2007-12-14 16:50:54 +00:00
xmds - Update to 1.6 2008-04-18 01:05:19 +00:00
Makefile Jmol is a Java molecular viewer for 2008-05-17 23:04:44 +00:00