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3bb199e0ba
freebsd-ports/science
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Max Brazhnikov 3bb199e0ba Add new port science/py-biolccc: 
libBioLCCC is an open source library for prediction of peptide and
protein retention time in liquid chromatography. It is based on
BioLCCC model (Liquid Chromatography of Biomacromolecules at Critical
Conditions).

pyBioLCCC is set of Python wrappings around libBioLCCC.

WWW:	http://theorchromo.ru/lib/
2010-11-13 21:40:45 +00:00
..
2d-rewriter - Update to 1.4 2010-01-12 03:02:16 +00:00
2dhf - Change sed delimiters away from , 2009-10-04 20:26:01 +00:00
abinit Punt autoconf267->autoconf268 2010-10-16 11:52:47 +00:00
afni Bounce PORTREVISION for gettext-related ports. Have fun, ya'll. 2010-05-31 02:01:56 +00:00
at Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now 2009-09-13 00:08:01 +00:00
avogadro - Update to 1.0.1 2010-07-16 01:29:59 +00:00
bblimage
bddsolve Bddsolve is a BDD-based tool for solving satisfiability and reachability 2010-05-12 13:25:37 +00:00
bft Make fetchable again. 2010-09-29 19:33:17 +00:00
bodr - Update to 9 2010-07-31 22:13:27 +00:00
brian - Update to 1.2.1 2010-10-20 03:31:01 +00:00
buddy - Switch SourceForge ports to the new File Release System: categories starting with P,R,S 2009-08-22 00:35:32 +00:00
cdcl - update to 1.4.1 2010-03-28 06:47:48 +00:00
cdf - Update to 3.3.0 2010-01-21 21:14:54 +00:00
cdo - Do not run cdotest on 6.x 2010-10-21 06:44:18 +00:00
cgnslib Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now 2009-09-13 00:08:01 +00:00
checkmol - Bump PORTREVISION. lang/fpc was updated and now it supports amd64 2010-08-16 18:46:23 +00:00
chemical-mime-data - update to 1.4.1 2010-03-28 06:47:48 +00:00
chemtool - update to 1.4.1 2010-03-28 06:47:48 +00:00
chemtool-devel Bounce PORTREVISION for gettext-related ports. Have fun, ya'll. 2010-05-31 02:01:56 +00:00
clhep - Update to 2.1.0.1 2010-11-13 11:13:13 +00:00
colt
crf++ - Update to 0.54 2010-07-12 09:17:02 +00:00
dcl Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now 2009-09-13 00:08:01 +00:00
devisor
dtiquery - Chase math/vtk5 update 2010-04-03 15:36:30 +00:00
ecs Bounce PORTREVISION for gettext-related ports. Have fun, ya'll. 2010-05-31 02:01:56 +00:00
elmer-eio - Update my mail address to FreeBSD 2009-11-27 22:52:30 +00:00
elmer-fem Punt autoconf267->autoconf268 2010-10-16 11:52:47 +00:00
elmer-hutiter Punt autoconf267->autoconf268 2010-10-16 11:52:47 +00:00
elmer-matc - Update my mail address to FreeBSD 2009-11-27 22:52:30 +00:00
elmer-meshgen2d - Update my mail address to FreeBSD 2009-11-27 22:52:30 +00:00
elmergrid - Update my mail address to FreeBSD 2009-11-27 22:52:30 +00:00
elmerpost - Update my mail address to FreeBSD 2009-11-27 22:52:30 +00:00
epte Update my MAINTAINER address to culot@FreeBSD.org. 2010-10-20 05:53:20 +00:00
euler - update to 1.4.1 2010-03-28 06:47:48 +00:00
fastcap
fasthenry
felt - Switch SourceForge ports to the new File Release System: categories starting with P,R,S 2009-08-22 00:35:32 +00:00
flounder - update to 1.4.1 2010-03-28 06:47:48 +00:00
fvm - Chase relocation of net/mpich2 2009-11-28 10:44:56 +00:00
g3data Drop maintainership for ports I can't maintain anymore. 2010-10-25 20:09:06 +00:00
gamess add pkg-message when gamess won't run and bump portrevision accordingly. 2010-06-17 10:40:46 +00:00
gave - update to 1.4.1 2010-03-28 06:47:48 +00:00
gchemutils Update to 0.12.3. 2010-09-12 19:51:44 +00:00
gdis - update to 1.4.1 2010-03-28 06:47:48 +00:00
gerris Presenting GNOME 2.30.1 for FreeBSD. The offical release notes for this 2010-05-10 21:19:08 +00:00
getdp - Bump PORTREVISION to chase the update of math/gsl 2010-03-29 01:12:27 +00:00
ghemical - update to 1.4.1 2010-03-28 06:47:48 +00:00
ghmm - Switch SourceForge ports to the new File Release System: categories starting with P,R,S 2009-08-22 00:35:32 +00:00
gnudatalanguage Mark BROKEN only with the old binutils. 2010-09-27 20:14:38 +00:00
gramps - Update to 3.2.4 2010-11-08 21:36:03 +00:00
gromacs - Update maintainer email address flo@kasimir.com -> flo@smeets.im 2010-09-22 21:21:25 +00:00
gsmc Punt autoconf267->autoconf268 2010-10-16 11:52:47 +00:00
gsystem - update to 1.4.1 2010-03-28 06:47:48 +00:00
gtamsanalyzer LICENSE GPLv2 2010-06-05 19:53:32 +00:00
gwyddion Bounce PORTREVISION for gettext-related ports. Have fun, ya'll. 2010-05-31 02:01:56 +00:00
harminv Harminv is a free program (and accompanying library) to solve the problem 2010-01-02 02:54:00 +00:00
hdf - update to jpeg-8 2010-02-05 11:46:55 +00:00
hdf5 - Add CONFLICTS with science/hdf5-18 2009-12-10 19:15:13 +00:00
hdf5-18 - Fixed WWW: link 2010-05-05 14:53:19 +00:00
hdf-java Fix configure when HDF was built with SZIP support [1] 2010-11-04 13:05:36 +00:00
hs-bio - Add DIST_SUBDIR for Haskell Cabal ports (with default of "cabal") 2010-08-08 08:49:38 +00:00
ics - update to 1.4.1 2010-03-28 06:47:48 +00:00
InsightToolkit - Switch SourceForge ports to the new File Release System: categories starting with P,R,S 2009-08-22 00:35:32 +00:00
isaac-cfd Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now 2009-09-13 00:08:01 +00:00
jmol - Update to 11.8.24 2010-06-03 08:22:14 +00:00
jstrack - Update from 3.0.3 to 3.1.0. 2010-07-27 15:07:33 +00:00
kmovisto - update to 1.4.1 2010-03-28 06:47:48 +00:00
kst Punt autoconf267->autoconf268 2010-10-16 11:52:47 +00:00
kst2 Update to 2.0.0 - the first release based on Qt4. 2010-08-23 18:13:56 +00:00
lamprop
libctl - Update to 3.1 2010-01-24 02:11:31 +00:00
libghemical Fix build. 2010-09-19 05:53:44 +00:00
libint
libkml libkml is a library for use with applications that want to 2009-10-07 11:10:21 +00:00
liblinear - Update to 1.7 2010-09-13 14:02:28 +00:00
liboglappth
libquantum libquantum is a C library for the simulation of quantum 2009-08-14 20:02:07 +00:00
libsvm - Use INSTALL_LIB when installing shared lib and create symlink so configure 2010-11-10 14:06:44 +00:00
libsvm-python Update to 2.91 which includes a new rewritten Python interface 2010-04-05 10:24:25 +00:00
linsmith Bounce PORTREVISION for gettext-related ports. Have fun, ya'll. 2010-05-31 02:01:56 +00:00
massxpert - Fix mans 2010-05-27 06:07:41 +00:00
mayavi - update to 1.4.1 2010-03-28 06:47:48 +00:00
mbdyn - Chase relocation of net/mpich2 2009-11-28 10:44:56 +00:00
mcstas - Update to 1.12b 2010-08-22 03:31:54 +00:00
medit Upgrade to 2010.06.14, aka 3.0a. 2010-10-17 14:45:12 +00:00
meep - Fix build 2010-06-06 07:20:54 +00:00
minc -Repocopy devel/libtool15 -> libtool22 and libltdl15 -> libltdl22. 2009-08-02 19:36:34 +00:00
minc2 -Repocopy devel/libtool15 -> libtool22 and libltdl15 -> libltdl22. 2009-08-02 19:36:34 +00:00
mol2ps - Bump PORTREVISION. lang/fpc was updated and now it supports amd64 2010-08-16 18:46:23 +00:00
mpb - Bump PORTREVISION to chase the update of libctl 2010-01-24 02:14:17 +00:00
mpqc Punt autoconf267->autoconf268 2010-10-16 11:52:47 +00:00
mpqc-mpich
ncs - update to 1.4.1 2010-03-28 06:47:48 +00:00
netcdf - Use LOCAL/sunpoet as backup MASTER_SITES 2010-10-01 01:14:18 +00:00
netcdf3-ftn - Update MAINTAINER to my FreeBSD.org address 2010-09-22 17:10:26 +00:00
netcdf4 - Use LOCAL/sunpoet as backup MASTER_SITES 2010-10-01 01:14:18 +00:00
netcdf-ftn - Update MAINTAINER to my FreeBSD.org address 2010-09-22 17:10:26 +00:00
nifticlib - Switch SourceForge ports to the new File Release System: categories starting with P,R,S 2009-08-22 00:35:32 +00:00
oases Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now 2009-09-13 00:08:01 +00:00
omnetpp - update to 1.4.1 2010-03-28 06:47:48 +00:00
openbabel Update to 2.2.3 2010-06-26 19:17:44 +00:00
ovt - update to 1.4.1 2010-03-28 06:47:48 +00:00
p5-Algorithm-SVMLight - only 13% of the p5- ports embed @comment $FreeBSD$: 2010-09-24 02:03:44 +00:00
p5-Chemistry-3DBuilder - /mach/ -> /%%PERL_ARCH%%/ 2010-09-24 01:48:27 +00:00
p5-Chemistry-Bond-Find - /mach/ -> /%%PERL_ARCH%%/ 2010-09-24 01:48:27 +00:00
p5-Chemistry-Canonicalize - /mach/ -> /%%PERL_ARCH%%/ 2010-09-24 01:48:27 +00:00
p5-Chemistry-Elements - lang/perl5.6 is dead, remove PERL_LEVEL/PERL_VERSION < 500801 checks 2009-07-22 16:27:08 +00:00
p5-Chemistry-File-MDLMol - /mach/ -> /%%PERL_ARCH%%/ 2010-09-24 01:48:27 +00:00
p5-Chemistry-File-Mopac - /mach/ -> /%%PERL_ARCH%%/ 2010-09-24 01:48:27 +00:00
p5-Chemistry-File-PDB
p5-Chemistry-File-SLN - /mach/ -> /%%PERL_ARCH%%/ 2010-09-24 01:48:27 +00:00
p5-Chemistry-File-SMARTS - /mach/ -> /%%PERL_ARCH%%/ 2010-09-24 01:48:27 +00:00
p5-Chemistry-File-SMILES - /mach/ -> /%%PERL_ARCH%%/ 2010-09-24 01:48:27 +00:00
p5-Chemistry-File-VRML - /mach/ -> /%%PERL_ARCH%%/ 2010-09-24 01:48:27 +00:00
p5-Chemistry-File-XYZ - /mach/ -> /%%PERL_ARCH%%/ 2010-09-24 01:48:27 +00:00
p5-Chemistry-FormulaPattern - /mach/ -> /%%PERL_ARCH%%/ 2010-09-24 01:48:27 +00:00
p5-Chemistry-InternalCoords - /mach/ -> /%%PERL_ARCH%%/ 2010-09-24 01:48:27 +00:00
p5-Chemistry-Isotope - /mach/ -> /%%PERL_ARCH%%/ 2010-09-24 01:48:27 +00:00
p5-Chemistry-MacroMol
p5-Chemistry-MidasPattern - /mach/ -> /%%PERL_ARCH%%/ 2010-09-24 01:48:27 +00:00
p5-Chemistry-Mok - /mach/ -> /%%PERL_ARCH%%/ 2010-09-24 01:48:27 +00:00
p5-Chemistry-Mol
p5-Chemistry-Pattern - /mach/ -> /%%PERL_ARCH%%/ 2010-09-24 01:48:27 +00:00
p5-Chemistry-Reaction - /mach/ -> /%%PERL_ARCH%%/ 2010-09-24 01:48:27 +00:00
p5-Chemistry-Ring - /mach/ -> /%%PERL_ARCH%%/ 2010-09-24 01:48:27 +00:00
p5-Geo-ReadGRIB - Update to 1.21 2009-11-22 03:15:14 +00:00
p5-Geo-WebService-Elevation-USGS - Update to 0.006 2010-07-04 02:35:49 +00:00
p5-PerlMol - /mach/ -> /%%PERL_ARCH%%/ 2010-09-24 01:48:27 +00:00
p5-Physics-Unit Update my MAINTAINER address to culot@FreeBSD.org. 2010-10-20 05:53:20 +00:00
paje LICENSE LGPL21 2010-06-05 06:14:28 +00:00
paraview Update to 3.8.0 2010-06-05 13:07:51 +00:00
pcp - Switch SourceForge ports to the new File Release System: categories starting with P,R,S 2009-08-22 00:35:32 +00:00
peekabot Reset maintainer at his request. 2010-06-15 01:01:13 +00:00
pnetcdf Update to 1.2.0 2010-09-18 15:57:33 +00:00
psi3 Build fix with gotoblas. 2010-02-16 07:23:49 +00:00
psychopy - update to 1.4.1 2010-03-28 06:47:48 +00:00
py-biolccc Add new port science/py-biolccc: 2010-11-13 21:40:45 +00:00
py-DendroPy - Update to 3.7.1 2010-10-21 01:45:15 +00:00
py-h5py - Add py-numpy into RUN_DEPENDS 2010-02-01 11:27:58 +00:00
py-hcluster - update to 1.4.1 2010-03-28 06:47:48 +00:00
py-mdp - Switch SourceForge ports to the new File Release System: categories starting with P,R,S 2009-08-22 00:35:32 +00:00
py-mlpy - Update to 2.2.1 2010-10-28 12:09:35 +00:00
py-netCDF4 - Update to 0.9.3 2010-10-29 01:41:56 +00:00
py-openbabel Update to 2.2.3 2010-06-26 19:17:44 +00:00
py-paida - Get rip python 2.3+ 2009-12-13 17:00:14 +00:00
py-pydicom - Update to 0.9.4.1 2010-06-25 02:39:08 +00:00
py-scipy - Update to 0.8.0 2010-10-10 05:30:49 +00:00
pybrain PyBrain is a modular Machine Learning Library for Python. 2009-11-19 13:44:38 +00:00
pycdf - Switch SourceForge ports to the new File Release System: categories starting with P,R,S 2009-08-22 00:35:32 +00:00
pynn PyNN(pronounced 'pine') is a simulator-independent language for 2010-05-19 05:31:44 +00:00
pyvox
qcl
qtresistors - update to 1.4.1 2010-03-28 06:47:48 +00:00
ruby-dcl - update to 1.4.1 2010-03-28 06:47:48 +00:00
ruby-gphys - Update to 1.0.0 2010-04-28 06:00:33 +00:00
ruby-netcdf - Update to 0.6.4 2010-06-08 00:21:17 +00:00
silo - update to 1.4.1 2010-03-28 06:47:48 +00:00
simlib Not for powerpc, either. 2010-04-01 10:24:44 +00:00
svmlight
szip -Repocopy devel/libtool15 -> libtool22 and libltdl15 -> libltdl22. 2009-08-02 19:36:34 +00:00
udunits - Use LOCAL/sunpoet as backup MASTER_SITES 2010-10-01 01:14:18 +00:00
v_sim Bounce PORTREVISION for gettext-related ports. Have fun, ya'll. 2010-05-31 02:01:56 +00:00
vis5d+ - update to 1.4.1 2010-03-28 06:47:48 +00:00
vmd - update to 1.4.1 2010-03-28 06:47:48 +00:00
x11iraf
xmakemol For ports maintained by ports@FreeBSD.org, remove names and/or 2009-12-21 02:19:12 +00:00
xmds Purge 3 outdated, old-and-busted, versions of automake as part of 2010-09-23 00:40:50 +00:00
Makefile Objects of class Physics::Unit define units of measurement that correspond 2010-09-09 00:26:13 +00:00