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freebsd-ports/science
Mark Linimon 06e6677793 Now that the Java 1.3 and Java 1.4 ports are deprecated and will expire soon,
remove support for them from bsd.java.mk.  As Jikes is not available in Java 1.5
or higher, remove it from bsd.java.mk too (suggested by hq@) and from the ports
which used it (only occurences were USE_JIKES=no).  Support for the Blackdown VM
is also removed, as it is not available in Java 1.5 and higher.

Also remove the mapping from Java 1.1-1.4 to Java 1.5+ in bsd.java.mk to detect
old, broken ports; therefore bump the minimal value of JAVA_VERSION to 1.5.
While here, replace static values of JAVA_VERSION in files/*.in by
%%JAVA_VERSION%% .

PR:		ports/158969
Submitted by:	rene
Tested on:	pointyhat-west -exp
2011-07-21 05:03:02 +00:00
..
2d-rewriter - remove MD5 2011-07-03 13:22:24 +00:00
2dhf - remove MD5 2011-07-03 13:22:24 +00:00
abinit - remove MD5 2011-07-03 13:22:24 +00:00
afni - remove MD5 2011-07-03 13:22:24 +00:00
at - remove MD5 2011-07-03 13:22:24 +00:00
avogadro - remove MD5 2011-07-03 13:22:24 +00:00
bblimage Update to 0.72, follow upstream name change, and clean up 2011-07-01 10:46:10 +00:00
bddsolve - remove MD5 2011-07-03 13:22:24 +00:00
bft - remove MD5 2011-07-03 13:22:24 +00:00
bodr - remove MD5 2011-07-03 13:22:24 +00:00
brian
buddy - remove MD5 2011-07-03 13:22:24 +00:00
cdcl - remove MD5 2011-07-03 13:22:24 +00:00
cdf - remove MD5 2011-07-03 13:22:24 +00:00
cdo - Update to 1.5.1 2011-07-16 06:12:30 +00:00
cgnslib - Bump PORTREVISION for science/hdf5-18 shlib change 2011-07-15 07:00:46 +00:00
checkmol - remove MD5 2011-07-03 13:22:24 +00:00
chemical-mime-data - remove MD5 2011-07-03 13:22:24 +00:00
chemtool - remove MD5 2011-07-03 13:22:24 +00:00
chemtool-devel - remove MD5 2011-07-03 13:22:24 +00:00
clhep - remove MD5 2011-07-03 13:22:24 +00:00
colt Now that the Java 1.3 and Java 1.4 ports are deprecated and will expire soon, 2011-07-21 05:03:02 +00:00
crf++ - remove MD5 2011-07-03 13:22:24 +00:00
dcl - remove MD5 2011-07-03 13:22:24 +00:00
devisor Now that the Java 1.3 and Java 1.4 ports are deprecated and will expire soon, 2011-07-21 05:03:02 +00:00
dtiquery - remove MD5 2011-07-03 13:22:24 +00:00
ecs - Bump PORTREVISION for science/hdf5-18 shlib change 2011-07-15 07:00:46 +00:00
elmer-eio - remove MD5 2011-07-03 13:22:24 +00:00
elmer-hutiter
elmer-matc - remove MD5 2011-07-03 13:22:24 +00:00
elmer-meshgen2d - remove MD5 2011-07-03 13:22:24 +00:00
elmergrid - remove MD5 2011-07-03 13:22:24 +00:00
elmerpost - remove MD5 2011-07-03 13:22:24 +00:00
epte - remove MD5 2011-07-03 13:22:24 +00:00
euler - remove MD5 2011-07-03 13:22:24 +00:00
fastcap
fasthenry
felt - remove MD5 2011-07-03 13:22:24 +00:00
flounder - remove MD5 2011-07-03 13:22:24 +00:00
fvm - Bump PORTREVISION for science/hdf5-18 shlib change 2011-07-15 07:00:46 +00:00
g3data - remove MD5 2011-07-03 13:22:24 +00:00
gamess - remove MD5 2011-07-03 13:22:24 +00:00
gave - remove MD5 2011-07-03 13:22:24 +00:00
gchemutils Chase goffice and gnumeric update. 2011-06-23 18:35:22 +00:00
gdis - remove MD5 2011-07-03 13:22:24 +00:00
gerris - remove MD5 2011-07-03 13:22:24 +00:00
getdp - remove MD5 2011-07-03 13:22:24 +00:00
ghemical - remove MD5 2011-07-03 13:22:24 +00:00
ghmm - remove MD5 2011-07-03 13:22:24 +00:00
gnudatalanguage - Bump PORTREVISION for science/hdf5-18 shlib change 2011-07-15 07:00:46 +00:00
gramps
gromacs
gsmc - remove MD5 2011-07-03 13:22:24 +00:00
gsystem - remove MD5 2011-07-03 13:22:24 +00:00
gtamsanalyzer
gwyddion - remove MD5 2011-07-03 13:22:24 +00:00
h5utils
harminv - remove MD5 2011-07-03 13:22:24 +00:00
hdf - remove MD5 2011-07-03 13:22:24 +00:00
hdf5 - remove MD5 2011-07-03 13:22:24 +00:00
hdf5-18 - Update to 1.8.7 2011-07-15 06:58:28 +00:00
hdf-java - Bump PORTREVISION for science/hdf5-18 shlib change 2011-07-15 07:00:46 +00:00
hs-bio - Update to 0.5.0.1 2011-07-10 01:03:33 +00:00
ics - remove MD5 2011-07-03 13:22:24 +00:00
InsightToolkit - remove MD5 2011-07-03 13:22:24 +00:00
isaac-cfd - remove MD5 2011-07-03 13:22:24 +00:00
jmol - remove MD5 2011-07-03 13:22:24 +00:00
jstrack - remove MD5 2011-07-03 13:22:24 +00:00
kmovisto - remove MD5 2011-07-03 13:22:24 +00:00
kst Drop maintainership (I don't use Qt3 ports anymore) 2011-07-07 17:34:13 +00:00
kst2
lamprop - Update to 1.3.3 2011-06-23 10:17:37 +00:00
libctl - remove MD5 2011-07-03 13:22:24 +00:00
libghemical - remove MD5 2011-07-03 13:22:24 +00:00
libint - remove MD5 2011-07-03 13:22:24 +00:00
libkml - remove MD5 2011-07-03 13:22:24 +00:00
liblinear
liboglappth - remove MD5 2011-07-03 13:22:24 +00:00
libquantum - remove MD5 2011-07-03 13:22:24 +00:00
libsvm
libsvm-python
linsmith
massxpert
mayavi
mbdyn
mcstas - remove MD5 2011-07-03 13:22:24 +00:00
medit
meep - Add optional dependency net/openmpi 2011-06-21 02:19:07 +00:00
minc - remove MD5 2011-07-03 13:22:24 +00:00
minc2 - remove MD5 2011-07-03 13:22:24 +00:00
mol2ps - remove MD5 2011-07-03 13:22:24 +00:00
mpb - remove MD5 2011-07-03 13:22:24 +00:00
mpqc
mpqc-mpich
ncs
netcdf
netcdf3-ftn
netcdf4 - Bump PORTREVISION for science/hdf5-18 shlib change 2011-07-15 07:00:46 +00:00
netcdf-ftn
nifticlib - remove MD5 2011-07-03 13:22:24 +00:00
omnetpp - remove MD5 2011-07-03 13:22:24 +00:00
openbabel - remove MD5 2011-07-03 13:22:24 +00:00
ovt Now that the Java 1.3 and Java 1.4 ports are deprecated and will expire soon, 2011-07-21 05:03:02 +00:00
p5-Algorithm-SVMLight - remove MD5 2011-07-03 13:22:24 +00:00
p5-Chemistry-3DBuilder - Replace ../../authors in MASTER_SITE_SUBDIR with CPAN:CPANID macro. 2011-06-20 09:03:27 +00:00
p5-Chemistry-Bond-Find - Replace ../../authors in MASTER_SITE_SUBDIR with CPAN:CPANID macro. 2011-06-20 09:03:27 +00:00
p5-Chemistry-Canonicalize - Replace ../../authors in MASTER_SITE_SUBDIR with CPAN:CPANID macro. 2011-06-20 09:03:27 +00:00
p5-Chemistry-Elements
p5-Chemistry-File-MDLMol - Replace ../../authors in MASTER_SITE_SUBDIR with CPAN:CPANID macro. 2011-06-20 09:03:27 +00:00
p5-Chemistry-File-Mopac - Replace ../../authors in MASTER_SITE_SUBDIR with CPAN:CPANID macro. 2011-06-20 09:03:27 +00:00
p5-Chemistry-File-PDB - remove MD5 2011-07-03 13:22:24 +00:00
p5-Chemistry-File-SLN - Replace ../../authors in MASTER_SITE_SUBDIR with CPAN:CPANID macro. 2011-06-20 09:03:27 +00:00
p5-Chemistry-File-SMARTS - Replace ../../authors in MASTER_SITE_SUBDIR with CPAN:CPANID macro. 2011-06-20 09:03:27 +00:00
p5-Chemistry-File-SMILES - Replace ../../authors in MASTER_SITE_SUBDIR with CPAN:CPANID macro. 2011-06-20 09:03:27 +00:00
p5-Chemistry-File-VRML - Replace ../../authors in MASTER_SITE_SUBDIR with CPAN:CPANID macro. 2011-06-20 09:03:27 +00:00
p5-Chemistry-File-XYZ - Replace ../../authors in MASTER_SITE_SUBDIR with CPAN:CPANID macro. 2011-06-20 09:03:27 +00:00
p5-Chemistry-FormulaPattern - Replace ../../authors in MASTER_SITE_SUBDIR with CPAN:CPANID macro. 2011-06-20 09:03:27 +00:00
p5-Chemistry-InternalCoords - Replace ../../authors in MASTER_SITE_SUBDIR with CPAN:CPANID macro. 2011-06-20 09:03:27 +00:00
p5-Chemistry-Isotope - Replace ../../authors in MASTER_SITE_SUBDIR with CPAN:CPANID macro. 2011-06-20 09:03:27 +00:00
p5-Chemistry-MacroMol - remove MD5 2011-07-03 13:22:24 +00:00
p5-Chemistry-MidasPattern - Replace ../../authors in MASTER_SITE_SUBDIR with CPAN:CPANID macro. 2011-06-20 09:03:27 +00:00
p5-Chemistry-Mok - Replace ../../authors in MASTER_SITE_SUBDIR with CPAN:CPANID macro. 2011-06-20 09:03:27 +00:00
p5-Chemistry-Mol - remove MD5 2011-07-03 13:22:24 +00:00
p5-Chemistry-Pattern - Replace ../../authors in MASTER_SITE_SUBDIR with CPAN:CPANID macro. 2011-06-20 09:03:27 +00:00
p5-Chemistry-Reaction - Replace ../../authors in MASTER_SITE_SUBDIR with CPAN:CPANID macro. 2011-06-20 09:03:27 +00:00
p5-Chemistry-Ring - Replace ../../authors in MASTER_SITE_SUBDIR with CPAN:CPANID macro. 2011-06-20 09:03:27 +00:00
p5-Geo-BUFR
p5-Geo-Coordinates-Converter - Replace ../../authors in MASTER_SITE_SUBDIR with CPAN:CPANID macro. 2011-06-20 09:03:27 +00:00
p5-Geo-Coordinates-Converter-iArea
p5-Geo-ReadGRIB - remove MD5 2011-07-03 13:22:24 +00:00
p5-Geo-WebService-Elevation-USGS
p5-PerlMol - Replace ../../authors in MASTER_SITE_SUBDIR with CPAN:CPANID macro. 2011-06-20 09:03:27 +00:00
p5-Physics-Unit - remove MD5 2011-07-03 13:22:24 +00:00
paje
paraview
peekabot
pnetcdf
psi3 - remove MD5 2011-07-03 13:22:24 +00:00
psychopy - Update to 1.65.00 2011-07-05 00:47:55 +00:00
py-biolccc
py-DendroPy
py-h5py - remove MD5 2011-07-03 13:22:24 +00:00
py-hcluster - remove MD5 2011-07-03 13:22:24 +00:00
py-mdp
py-mlpy
py-netCDF4 - Bump PORTREVISION for science/hdf5-18 shlib change 2011-07-15 07:00:46 +00:00
py-obspy-core - Update to 0.4.8 2011-06-29 01:10:17 +00:00
py-obspy.gse2 - Update to 0.4.8 2011-06-29 01:17:16 +00:00
py-obspy.imaging obspy.imaging provides tools for displaying features used in seismology. 2011-06-29 08:18:07 +00:00
py-obspy.mseed - Update to 0.4.9 2011-06-29 01:14:41 +00:00
py-obspy.signal - Update to 0.4.9 2011-06-29 01:14:41 +00:00
py-obspy.wav
py-obspy.xseed The obspy.xseed package contains methods in order to read, write and 2011-06-29 08:13:17 +00:00
py-openbabel - remove MD5 2011-07-03 13:22:24 +00:00
py-paida - remove MD5 2011-07-03 13:22:24 +00:00
py-pydicom - remove MD5 2011-07-03 13:22:24 +00:00
py-scimath
py-scipy
py-ws2300 - New port science/py-ws2300 2011-07-01 20:23:41 +00:00
pybrain - remove MD5 2011-07-03 13:22:24 +00:00
pycdf - remove MD5 2011-07-03 13:22:24 +00:00
pynn - remove MD5 2011-07-03 13:22:24 +00:00
pyvox Update to 0.72, follow upstream name change, and clean up 2011-07-01 10:46:10 +00:00
qcl - remove MD5 2011-07-03 13:22:24 +00:00
qtresistors - remove MD5 2011-07-03 13:22:24 +00:00
R-cran-AMORE
R-cran-bayesm
ruby-dcl - remove MD5 2011-07-03 13:22:24 +00:00
ruby-gphys - remove MD5 2011-07-03 13:22:24 +00:00
ruby-netcdf
rubygem-ai4r - Cannoicalize the WWW: [again], 2011-06-23 17:51:43 +00:00
silo - remove MD5 2011-07-03 13:22:24 +00:00
simlib - remove MD5 2011-07-03 13:22:24 +00:00
svmlight Fix fetch. 2011-07-08 04:07:55 +00:00
szip - remove MD5 2011-07-03 13:22:24 +00:00
udunits
v_sim
veusz
vis5d+ - remove MD5 2011-07-03 13:22:24 +00:00
vmd
x11iraf - remove MD5 2011-07-03 13:22:24 +00:00
xmakemol - remove MD5 2011-07-03 13:22:24 +00:00
xmds - remove MD5 2011-07-03 13:22:24 +00:00
Makefile - New port science/py-ws2300 2011-07-01 20:23:41 +00:00