Greg Lewis 10d07fbd22 Unbreak this port: ... . Fix dependencies to be in sync with the recent JDK ports renaming. . Replace MASTER_SITES with a location that actually contains the source. . Fix the packing list. Note that there is a much newer version of this application available, but that is beyond the scope of what I was trying to do (just fix the JDK dependency), as is the last two items.		2002-06-16 01:08:49 +00:00
..
artemis	Initial import of artemis 4.0	2001-12-22 14:39:40 +00:00
avida	add avida 1.6.0	2002-04-20 15:17:46 +00:00
babel	* Replace pkg-message about setting BABEL_DIR with a wrapper script	2001-12-02 13:09:47 +00:00
biojava	Unbreak this port:	2002-06-16 01:08:49 +00:00
chemeq	upgrade to V110-1	2002-04-21 13:33:29 +00:00
clustalw	- Add a new patch	2002-03-27 14:01:57 +00:00
coalesce	Add coalesce 1.50, a program to fit population models.	2001-08-06 14:41:58 +00:00
crimap	Add crimap 2.4, a tool for the creation of multilocus linkage maps.	2002-03-27 14:42:56 +00:00
deft	change master site	2002-03-29 08:15:13 +00:00
dna-qc	Add dna-qc 1993.07.26, a quality control algorithm for DNA	2001-12-19 03:20:48 +00:00
emboss	BROKEN: incorrect checksums	2002-05-17 09:24:32 +00:00
fasta	Replace erroneous usage of INSTALL_MAN with INSTALL_DATA.	2001-07-03 09:08:26 +00:00
fasta3	Replace erroneous usage of INSTALL_MAN with INSTALL_DATA.	2001-07-03 09:08:26 +00:00
fastdnaml	Add NOPORTDOCS support to pkg-plist	2001-07-08 18:15:34 +00:00
fluctuate	Add fluctuate 1.30, a program to fit population models.	2001-08-06 14:45:39 +00:00
gaussian98	Style police: WWW tags should either end in a file/script or TRAILING /; Fix the later case	2001-11-20 23:29:38 +00:00
genpak	Bump png major	2001-09-11 03:32:41 +00:00
gff2ps	- Install documentation	2002-02-13 02:54:31 +00:00
gperiodic	Pass maintainership to submitter and add a backup master site.	2002-02-20 06:53:44 +00:00
grappa	- Update to version 1.0.3	2001-08-29 11:53:29 +00:00
hmmer	- Update port to version 2.2g	2001-08-22 13:18:10 +00:00
kinemage
lamarc	Add lamarc 2001.08.06,	2001-08-07 08:17:58 +00:00
migrate	- Update to version 1.2.4	2001-08-22 14:43:45 +00:00
molden	Note distribution term.	2002-05-27 06:25:53 +00:00
mopac	Add NOPORTDOCS support to pkg-plist	2001-07-08 18:15:34 +00:00
nab	Remove #include <malloc.h>	2002-03-31 03:55:29 +00:00
ncbi-toolkit	Correct MASTER_SITES.	2002-06-08 00:40:10 +00:00
nclever	Add nclever 4.0, a character-based version of NCBI's Entrez program.	2001-09-26 09:22:02 +00:00
ortep3
p5-AcePerl	- Update to version 1.82	2002-01-25 12:35:20 +00:00
p5-bioperl	- Update to version 0.7.2, somewhat overdue. :-)	2002-01-25 11:46:09 +00:00
p5-bioperl-devel	- Add NO_LATEST_LINK, which should've been there in the first place. :-(	2001-09-20 15:11:14 +00:00
paml	- Update to version 3.1	2001-08-29 12:00:08 +00:00
phylip	- Update to version 3.6.a2.1 - since the distribution tarball hadn't been	2001-08-22 10:02:27 +00:00
pkg
platon	add USE_XLIB	2001-07-30 21:05:54 +00:00
povchem
psi88	update WWW and master site	2001-10-22 06:36:14 +00:00
py-biopython	- Update to version 1.00a4	2002-01-22 10:54:02 +00:00
rasmol	Fix WWW.	2002-03-08 20:50:08 +00:00
recombine	Add recombine 1.40, a program to fit population models across sites.	2001-08-06 14:49:53 +00:00
ruby-bio	Update to 0.3.6.	2002-04-10 18:37:18 +00:00
seaview	BROKEN: Checksum is incorrect	2002-05-18 02:36:56 +00:00
seqio	Remove a redundant trailing space.	2001-10-21 07:55:45 +00:00
sim4	Update to sim4-2002.03.03 to unbreak build.	2002-05-04 21:45:10 +00:00
spdbv	Swiss-PdbViewer is an application that provides a user friendly interface	2002-04-02 16:18:53 +00:00
t_coffee	Add t_coffee 1.37, a multiple DNA or protein sequence alignment package.	2002-01-25 14:58:16 +00:00
tinker	Upgrade tinker to the latest revision	2002-01-19 15:15:16 +00:00
treeviewx	Respect CFLAGS/CC.	2002-03-28 22:50:15 +00:00
tRNAscan-SE	Add tRNAscan-SE 1.21, an improved tool for transfer RNA detection.	2002-03-27 14:18:49 +00:00
xdrawchem	Use ${ECHO_CMD} instead of ${ECHO} where you mean the echo command;	2002-01-29 09:39:59 +00:00
xmolwt	o update to 0.7.	2002-01-23 19:52:38 +00:00
Makefile	add avida 1.6.0	2002-04-20 15:17:46 +00:00