Kurt Jaeger 2ed702d2d3 biology/molden: 5.4 -> 5.7 ... - Adds editable text fields that are longer than the visible string and introduces a new way of selecting a range of amino acids. - introduces interfaces to the open source packages openbabel and pharmer. Openbabel is used to create 2D images of the molecules in a .sdf file. It is also used to do 2D fingerprint searching. Pharmer is used to pharmacophore (3D) searching against indexed databases of .sdf files.		2016-08-26 06:00:47 +00:00
..
ariadne	Cleanup $() variables in ports Makefiles.	2016-07-20 15:33:20 +00:00
artemis
avida
babel
bcftools	biology/{htslib|samtools|bcftools}: 1.3 -> 1.3.1	2016-05-26 20:28:55 +00:00
bedtools	biology/bedtools is not jobs safe	2016-08-22 04:32:18 +00:00
biococoa
biojava	When there is a do-install target, do not use a post-install target, do	2016-07-19 11:04:13 +00:00
blat	- Fix trailing whitespace in pkg-messages	2016-05-19 11:09:14 +00:00
bowtie
bowtie2
bwa
cd-hit
cdbfasta
chemeq
clustalw	Remove useless WRKSRC definitions.	2016-05-25 15:43:34 +00:00
consed
crux
diamond	Update to version 0.8.19	2016-08-25 18:49:12 +00:00
emboss	- update libgd to 2.2.2	2016-07-20 09:33:31 +00:00
fasta
fasta3	- Fix trailing whitespace in pkg-messages	2016-05-19 11:09:14 +00:00
fastdnaml
fastool
fasttree
fastx-toolkit
fluctuate
garlic
gff2ps
gmap
gperiodic	- LICENSE	2016-07-02 09:05:22 +00:00
grappa	- Fix trailing whitespace in pkg-descrs, categories [a-f]*	2016-05-19 10:21:23 +00:00
hmmer
htslib	biology/{htslib|samtools|bcftools}: 1.3 -> 1.3.1	2016-05-26 20:28:55 +00:00
iolib
jalview	- Fix trailing whitespace in pkg-descrs, categories [a-f]*	2016-05-19 10:21:23 +00:00
jellyfish
lagan	- Fix trailing whitespace in pkg-messages	2016-05-19 11:09:14 +00:00
lamarc	- Switch to options helpers	2016-08-18 09:31:58 +00:00
libgtextutils
libsbml
linux-foldingathome
mafft	- Fix trailing whitespace in pkg-descrs, categories [a-f]*	2016-05-19 10:21:23 +00:00
mapm3	- Fix trailing whitespace in pkg-descrs, categories [a-f]*	2016-05-19 10:21:23 +00:00
migrate
molden	biology/molden: 5.4 -> 5.7	2016-08-26 06:00:47 +00:00
mopac
mrbayes
mummer
muscle
ncbi-blast+
ncbi-toolkit	- Add missing dependency, fixing build	2016-06-24 09:04:45 +00:00
p5-AcePerl
p5-Bio-ASN1-EntrezGene	- Fix trailing whitespace in pkg-descrs, categories [a-f]*	2016-05-19 10:21:23 +00:00
p5-Bio-Das
p5-Bio-Das-Lite
p5-Bio-GFF3
p5-Bio-Glite
p5-Bio-Graphics
p5-Bio-MAGETAB
p5-Bio-NEXUS	- Fix trailing whitespace in pkg-descrs, categories [a-f]*	2016-05-19 10:21:23 +00:00
p5-Bio-Phylo	- Fix trailing whitespace in pkg-descrs, categories [a-f]*	2016-05-19 10:21:23 +00:00
p5-Bio-SCF
p5-bioperl	- Fix trailing whitespace in pkg-descrs, categories [a-f]*	2016-05-19 10:21:23 +00:00
p5-bioperl-run
p5-transdecoder
paml	- Fix trailing whitespace in pkg-descrs, categories [a-f]*	2016-05-19 10:21:23 +00:00
phrap
phred
phylip
phyml
plink
plinkseq
primer3
protomol
psi88	- Fix trailing whitespace in pkg-descrs, categories [a-f]*	2016-05-19 10:21:23 +00:00
py-biom-format	- Fix run-time dependency issues	2016-06-11 09:25:04 +00:00
py-biopython
pycogent	- Update to 1.9 [1]	2016-08-08 11:21:04 +00:00
pyfasta	- Fix trailing whitespace in pkg-descrs, categories [a-f]*	2016-05-19 10:21:23 +00:00
python-nexus	- Update to 1.35	2016-06-08 07:39:05 +00:00
recombine	When there is a do-install target, do not use a post-install target, do	2016-07-19 11:04:13 +00:00
ruby-bio
samtools	biology/{htslib|samtools|bcftools}: 1.3 -> 1.3.1	2016-05-26 20:28:55 +00:00
seaview	biology/seaview: Update version 4.5.4.8=>4.6	2016-06-10 11:06:42 +00:00
seqan	- Do install cmake and pkgconfig modules	2016-05-27 16:10:36 +00:00
seqan1	When there is a do-install target, do not use a post-install target, do	2016-07-19 11:04:13 +00:00
seqan-apps	- Fix trailing whitespace in pkg-descrs, categories [a-f]*	2016-05-19 10:21:23 +00:00
seqio
seqtools	biology/seqtools: 4.42.1 -> 4.43.0	2016-07-31 14:19:09 +00:00
sim4
slclust	Remove unneeded usage of:	2016-06-06 15:25:42 +00:00
ssaha	- Fix trailing whitespace in pkg-descrs, categories [a-f]*	2016-05-19 10:21:23 +00:00
t_coffee
tinker
treepuzzle
treeviewx
trimmomatic
tRNAscan-SE
ugene
vcftools
velvet
wise	- Switch to options helpers	2016-06-21 09:05:06 +00:00
xmolwt	- Fix trailing whitespace in pkg-descrs, categories [a-f]*	2016-05-19 10:21:23 +00:00
Makefile	Remove expired ports without open PRs:	2016-07-04 20:48:23 +00:00