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52d72cd2b8
freebsd-ports/science
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Thierry Thomas 52d72cd2b8 Adding OpenKIM, an application programming interface (API) for 
coupling atomistic simulation codes and interatomic potential
subroutines.

PR:		ports/177692
Submitted by:	Jason Bacon <jwbacon (at) tds.net>
2014-02-21 15:39:56 +00:00
..
2d-rewriter Remove trailing whitespaces from category science 2014-02-21 13:39:18 +00:00
2dhf Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most cases 2014-02-16 17:15:31 +00:00
abinit Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most cases 2014-02-16 17:15:31 +00:00
afni Update math/R to 3.0.2 patched r64207 and math/R-cran-SuppDists to 1.1-9.1; 2013-11-13 08:19:34 +00:00
avogadro Chase boost and icu bump 2014-02-07 11:44:08 +00:00
bddsolve Chase boost and icu bump 2014-02-07 11:44:08 +00:00
bft - Stage support 2014-02-03 09:44:35 +00:00
bodr
brian Python cleanup: 2014-01-13 21:00:02 +00:00
buddy - Stage support 2014-02-21 01:58:34 +00:00
cdcl
cdf Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most cases 2014-02-16 17:15:31 +00:00
cdo
cgnslib Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most cases 2014-02-16 17:15:31 +00:00
checkmol
chemical-mime-data
chemtool
chemtool-devel science/chemtool-devel: Unbreak on FreeBSD 10+ 2013-12-25 22:08:13 +00:00
clhep
colt
crf++ Fix properties on pkg-plist 2014-01-21 23:40:21 +00:00
dcl Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most cases 2014-02-16 17:15:31 +00:00
devisor
dlpoly-classic Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most cases 2014-02-16 17:15:31 +00:00
dtiquery
ecs Remove trailing whitespaces from category science 2014-02-21 13:39:18 +00:00
elmer-eio Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most cases 2014-02-16 17:15:31 +00:00
elmer-hutiter Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most cases 2014-02-16 17:15:31 +00:00
elmer-matc - Stage support 2014-02-03 13:57:46 +00:00
elmer-meshgen2d
elmergrid
elmerpost science/elmer(post,-matc): Use modern fortran, unbreak, undeprecate 2013-12-26 02:47:52 +00:00
epte - Stage support 2014-02-06 10:41:38 +00:00
euler
fastcap - Stage support 2014-02-21 05:29:59 +00:00
fasthenry
felt
fisicalab Update core GNUstep libraries and fisicalab to latest versions 2014-01-12 22:54:58 +00:00
flounder
fvcom Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most cases 2014-02-16 17:15:31 +00:00
fvcom-mpi
fvm
g3data Consolidate the docbook ports into -sgml and -xml variants. 2014-02-19 14:45:19 +00:00
gamess Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most cases 2014-02-16 17:15:31 +00:00
gchemutils Add patch to unbreak with libc++ 10.0+. 2013-12-03 22:10:25 +00:00
gdis
getdp Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most cases 2014-02-16 17:15:31 +00:00
ghemical Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most cases 2014-02-16 17:15:31 +00:00
ghmm Fix properties on pkg-plist 2014-01-21 23:40:21 +00:00
gnudatalanguage Python cleanup: 2014-01-13 21:00:02 +00:00
gramps Python cleanup: 2014-01-13 21:00:02 +00:00
gromacs - USES=fortran. 2013-12-27 16:39:52 +00:00
gsmc - Enable staging 2013-12-30 22:50:38 +00:00
gtamsanalyzer
gwyddion - Update from 2.33 to 2.34 2014-01-03 00:08:56 +00:00
h5utils
harminv Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most cases 2014-02-16 17:15:31 +00:00
hdf New LIB_DEPENDS syntax, USES=fortran, staging. 2013-12-27 16:55:28 +00:00
hdf5 Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most cases 2014-02-16 17:15:31 +00:00
hdf5-18 Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most cases 2014-02-16 17:15:31 +00:00
hdf-java Back to the futur 2014-02-10 13:27:09 +00:00
hs-bio - Stagify lang/ghc and all the Haskell Cabal ports 2014-01-09 21:32:12 +00:00
InsightToolkit Now when it builds on 10.x, drop maintainership 2013-12-21 00:28:51 +00:00
isaac-cfd - USES=fortran gmake. 2013-12-27 20:26:21 +00:00
jmol
jstrack - Convert to USES=tk 2014-01-14 10:30:24 +00:00
kalzium KDE/FreeBSD team presents KDE SC 4.12.2 and KDE Workspace 4.11.6! 2014-02-18 14:23:03 +00:00
kst2 - Bump PORTREVISION for astro/cfitsio shlib change 2014-02-05 20:02:34 +00:00
lamprop
libctl Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most cases 2014-02-16 17:15:31 +00:00
libghemical Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most cases 2014-02-16 17:15:31 +00:00
libint
libkml - Update LICENSE 2013-12-26 21:48:54 +00:00
liblinear
liboglappth - Stage support 2014-02-03 14:31:32 +00:00
libquantum - Stage support 2014-02-03 13:57:46 +00:00
libsvm
libsvm-python
linsmith
massxpert
mbdyn Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most cases 2014-02-16 17:15:31 +00:00
mcstas
medit
meep Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most cases 2014-02-16 17:15:31 +00:00
mei - Upgrade to 1.0.4; 2013-11-26 21:30:22 +00:00
minc Part 2 at removing now useless FETCH_ARGS redifition 2014-01-03 01:12:59 +00:00
minc2 - Downgrade to the latest stable release; 2014-01-29 17:31:04 +00:00
mol2ps
mpb - New LIB_DEPENDS syntax. 2013-12-27 21:28:47 +00:00
mpqc Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most cases 2014-02-16 17:15:31 +00:00
mpqc-mpich
ncs - Bump PORTREVISION after KDE4_PREFIX change 2014-02-18 14:31:32 +00:00
netcdf Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most cases 2014-02-16 17:15:31 +00:00
netcdf3-ftn
netcdf4 Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most cases 2014-02-16 17:15:31 +00:00
netcdf-ftn - Remove LATEST_LINK 2013-12-10 19:18:39 +00:00
nifticlib Restore r323814 to remove MAKE_JOBS_UNSAFE. 2014-02-20 22:40:14 +00:00
openbabel Add upstream patch to fix the build with libc++. 2013-11-13 15:49:25 +00:00
openkim Adding OpenKIM, an application programming interface (API) for 2014-02-21 15:39:56 +00:00
p5-Algorithm-SVMLight Support staging. 2014-02-06 14:07:44 +00:00
p5-Chemistry-3DBuilder - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-Bond-Find - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-Canonicalize - add stage support 2014-01-29 17:18:46 +00:00
p5-Chemistry-Elements
p5-Chemistry-File-MDLMol - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-File-Mopac - add stage support 2014-01-29 17:18:46 +00:00
p5-Chemistry-File-PDB - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-File-SLN - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-File-SMARTS - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-File-SMILES - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-File-VRML - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-File-XYZ - add stage support 2014-01-29 17:18:46 +00:00
p5-Chemistry-FormulaPattern - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-InternalCoords - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-Isotope - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-MacroMol
p5-Chemistry-MidasPattern - add stage support 2014-01-29 17:18:46 +00:00
p5-Chemistry-Mok - Stage support 2014-02-01 14:41:07 +00:00
p5-Chemistry-Mol
p5-Chemistry-Pattern - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-Reaction - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-Ring - add stage support 2014-01-29 17:00:41 +00:00
p5-Geo-BUFR
p5-Geo-Coordinates-Converter
p5-Geo-Coordinates-Converter-iArea
p5-Geo-ReadGRIB - add stage support 2014-01-29 17:00:41 +00:00
p5-Geo-WebService-Elevation-USGS
p5-PerlMol - add stage support 2014-01-29 17:00:41 +00:00
p5-Physics-Unit Support staging. 2014-02-06 14:10:06 +00:00
paje
paraview Update freetype to 2.5.2. 2013-12-24 21:22:21 +00:00
peekabot Chase boost and icu bump 2014-02-07 11:44:08 +00:00
pnetcdf Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most cases 2014-02-16 17:15:31 +00:00
psi3 Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most cases 2014-02-16 17:15:31 +00:00
psychopy
py-coards science/py-coards: Modernise and enable STAGE support 2014-01-26 00:52:15 +00:00
py-DendroPy
py-h5py science/py-h5py: update to 2.2.1 2013-12-13 19:59:42 +00:00
py-hcluster
py-mdp science/py-mdp: support staging 2013-12-29 11:39:54 +00:00
py-mlpy
py-netCDF4 science/py-netCDF4: support staging 2013-12-29 11:41:17 +00:00
py-obspy Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most cases 2014-02-16 17:15:31 +00:00
py-paida
py-pupynere science/py-pupynere: Modernise: Enable STAGE, AUTOPLIST and more 2014-02-03 11:35:53 +00:00
py-pyaixi Python cleanup: 2014-01-13 21:00:02 +00:00
py-pydap science/py-pydap: update to 3.1.1 2013-11-29 11:40:24 +00:00
py-pydicom
py-scikit-learn Stagify. 2014-02-18 08:56:43 +00:00
py-scimath - Update WWW: 2013-11-20 20:51:25 +00:00
py-scipy Update to version 0.13.3. 2014-02-18 10:38:22 +00:00
py-ws2300
pybrain
pycdf Python cleanup: 2014-01-13 21:00:02 +00:00
pynn
pyteomics Update to 2.2.1 2013-11-29 11:57:18 +00:00
pyteomics.biolccc Use PYDISTUTILS_AUTOPLIST 2014-01-23 08:42:15 +00:00
qcl
qtresistors - Convert to USES=qmake (and other USES while I'm here) 2013-11-22 12:55:00 +00:00
R-cran-AMORE Fix DISTNAME 2014-02-01 14:02:24 +00:00
R-cran-bayesm Fix DISTNAME 2014-02-01 13:58:01 +00:00
R-cran-DCluster Convert Mk/bsd.cran.mk to the Uses framework. 2013-12-28 10:28:40 +00:00
R-cran-e1071 - Update to 1.6-2 2014-01-12 12:19:47 +00:00
R-cran-eco Fix DISTNAME 2014-02-01 13:49:09 +00:00
R-cran-Epi Convert Mk/bsd.cran.mk to the Uses framework. 2013-12-28 10:28:40 +00:00
R-cran-epicalc Convert Mk/bsd.cran.mk to the Uses framework. 2013-12-28 10:28:40 +00:00
R-cran-snow Convert Mk/bsd.cran.mk to the Uses framework. 2013-12-28 10:28:40 +00:00
R-cran-som Convert Mk/bsd.cran.mk to the Uses framework. 2013-12-28 10:28:40 +00:00
ruby-dcl
ruby-gphys
ruby-netcdf
rubygem-ai4r
sigrok-cli - Update to 0.2.2 2014-01-27 19:15:36 +00:00
silo - Update from 4.9 to 4.9.1 2013-12-18 23:27:40 +00:00
simlib
step KDE/FreeBSD team presents KDE SC 4.12.2 and KDE Workspace 4.11.6! 2014-02-18 14:23:03 +00:00
svmlight Fix properties on pkg-plist 2014-01-21 23:40:21 +00:00
szip
udunits
v_sim Remove trailing whitespaces from category science 2014-02-21 13:39:18 +00:00
veusz - Update to 1.19.1 2013-12-22 14:33:44 +00:00
vmd
voro++ - Update to 0.4.6 2014-02-21 10:29:52 +00:00
x11iraf
xfce4-equake-plugin - Update to 1.3.4 2014-01-31 12:27:20 +00:00
xmakemol
xmds
Makefile Adding OpenKIM, an application programming interface (API) for 2014-02-21 15:39:56 +00:00