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mirror of https://git.FreeBSD.org/ports.git synced 2024-11-30 01:15:52 +00:00
freebsd-ports/biology/ncbi-toolkit/pkg-plist
Pav Lucistnik 807384d668 - Update to 2.2.10 from 20041020
- Transfer maintainership

PR:		ports/67735
Submitted by:	Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
Approved by:	old maintainer indirectly in
http://lists.freebsd.org/pipermail/freebsd-ports-bugs/2004-June/035351.html
2005-03-19 21:32:13 +00:00

737 lines
19 KiB
Plaintext

bin/bl2seq
bin/blast
bin/blastall
bin/blastcl3
bin/blastclust
bin/blastpgp
bin/copymat
bin/fastacmd
bin/formatdb
bin/impala
bin/makemat
bin/megablast
bin/rpsblast
bin/seedtop
bin/asn2ff
bin/asn2gb
bin/asn2xml
bin/asndhuff
bin/checksub
bin/debruijn
bin/entrcmd
bin/fa2htgs
bin/findspl
bin/getseq
bin/getfeat
bin/getmesh
bin/getpub
bin/ddv
bin/gil2bin
bin/idfetch
bin/indexpub
bin/makeset
bin/tbl2asn
bin/vecscreen
bin/Nentrez
bin/Psequin
bin/entrez2
bin/netentcf
bin/udv
include/ncbi/connect/connect_export.h
include/ncbi/connect/ncbi_ansi_ext.h
include/ncbi/connect/ncbi_buffer.h
include/ncbi/connect/ncbi_comm.h
include/ncbi/connect/ncbi_config.h
include/ncbi/connect/ncbi_connection.h
include/ncbi/connect/ncbi_connector.h
include/ncbi/connect/ncbi_connutil.h
include/ncbi/connect/ncbi_core.h
include/ncbi/connect/ncbi_core_c.h
include/ncbi/connect/ncbi_dispd.h
include/ncbi/connect/ncbi_file_connector.h
include/ncbi/connect/ncbi_heapmgr.h
include/ncbi/connect/ncbi_host_info.h
include/ncbi/connect/ncbi_host_infop.h
include/ncbi/connect/ncbi_http_connector.h
include/ncbi/connect/ncbi_lbsmd.h
include/ncbi/connect/ncbi_memory_connector.h
include/ncbi/connect/ncbi_priv.h
include/ncbi/connect/ncbi_sendmail.h
include/ncbi/connect/ncbi_server_info.h
include/ncbi/connect/ncbi_server_infop.h
include/ncbi/connect/ncbi_service.h
include/ncbi/connect/ncbi_service_connector.h
include/ncbi/connect/ncbi_servicep.h
include/ncbi/connect/ncbi_socket.h
include/ncbi/connect/ncbi_socket_connector.h
include/ncbi/connect/ncbi_types.h
include/ncbi/connect/ncbi_util.h
include/ncbi/FSpCompat.h
include/ncbi/FullPath.h
include/ncbi/MoreCarbonAccessors.h
include/ncbi/MoreFilesExtras.h
include/ncbi/MoreFilesX.h
include/ncbi/Optimization.h
include/ncbi/OptimizationEnd.h
include/ncbi/PubStructAsn.h
include/ncbi/a2ferr.h
include/ncbi/a2ferrdf.h
include/ncbi/a2fstruc.h
include/ncbi/aacomp.h
include/ncbi/accentr.h
include/ncbi/accid1.h
include/ncbi/accutils.h
include/ncbi/actutils.h
include/ncbi/algorend.h
include/ncbi/alignloc.h
include/ncbi/alignmgr.h
include/ncbi/alignmgr2.h
include/ncbi/alignval.h
include/ncbi/aliparse.h
include/ncbi/aliread.h
include/ncbi/all.h
include/ncbi/allpub.h
include/ncbi/apparam.h
include/ncbi/asn.h
include/ncbi/asn2ff.h
include/ncbi/asn2ff6.h
include/ncbi/asn2ffg.h
include/ncbi/asn2ffp.h
include/ncbi/asn2gnbi.h
include/ncbi/asn2gnbk.h
include/ncbi/asn2gnbp.h
include/ncbi/asn2graphic.h
include/ncbi/asn2graphicp.h
include/ncbi/asnacces.h
include/ncbi/asnalign.h
include/ncbi/asnbibli.h
include/ncbi/asnblock.h
include/ncbi/asncode.h
include/ncbi/asnent2.h
include/ncbi/asnfdef.h
include/ncbi/asnfeat.h
include/ncbi/asngbseq.h
include/ncbi/asngen.h
include/ncbi/asnid0.h
include/ncbi/asninsdseq.h
include/ncbi/asnloc.h
include/ncbi/asnmdrs.h
include/ncbi/asnmedli.h
include/ncbi/asnmim.h
include/ncbi/asnmime.h
include/ncbi/asnmla.h
include/ncbi/asnneten.h
include/ncbi/asnproj.h
include/ncbi/asnprt.h
include/ncbi/asnpub.h
include/ncbi/asnpubme.h
include/ncbi/asnres.h
include/ncbi/asnseq.h
include/ncbi/asnsset.h
include/ncbi/asnsubmt.h
include/ncbi/asntax1.h
include/ncbi/asntax3.h
include/ncbi/asntaxon.h
include/ncbi/asntseq.h
include/ncbi/bandalgn.h
include/ncbi/binary.h
include/ncbi/biosrc.h
include/ncbi/blast.h
include/ncbi/blastconcat.h
include/ncbi/blastconcatdef.h
include/ncbi/blastdef.h
include/ncbi/blastkar.h
include/ncbi/blastpat.h
include/ncbi/blastpri.h
include/ncbi/blfmtutl.h
include/ncbi/blocks.h
include/ncbi/blstspc.h
include/ncbi/blstxml.h
include/ncbi/bspview.h
include/ncbi/bxmlobj.h
include/ncbi/casn.h
include/ncbi/cdconfig.h
include/ncbi/cdd.h
include/ncbi/cddapi.h
include/ncbi/cddposutil.h
include/ncbi/cddutil.h
include/ncbi/cdentrez.h
include/ncbi/cdnewlib.h
include/ncbi/cdrgn.h
include/ncbi/cdrom.h
include/ncbi/cdromlib.h
include/ncbi/cn3d.h
include/ncbi/cn3dentr.h
include/ncbi/codon.h
include/ncbi/cn3dmain.h
include/ncbi/cn3dmesh.h
include/ncbi/cn3dmodl.h
include/ncbi/cn3dmsel.h
include/ncbi/cn3dmsg.h
include/ncbi/cn3dopen.h
include/ncbi/cn3dsave.h
include/ncbi/cn3dshim.h
include/ncbi/cn3dstyl.h
include/ncbi/cn3dxprt.h
include/ncbi/corematx.h
include/ncbi/db_list.h
include/ncbi/ddvclick.h
include/ncbi/ddvcolor.h
include/ncbi/ddvcreate.h
include/ncbi/ddvgraph.h
include/ncbi/ddvmain.h
include/ncbi/ddvopen.h
include/ncbi/ddvpanel.h
include/ncbi/diagnost.h
include/ncbi/dlogutil.h
include/ncbi/document.h
include/ncbi/dotmatrx.h
include/ncbi/dotseq.h
include/ncbi/dotviewer.h
include/ncbi/drawingp.h
include/ncbi/drawseq.h
include/ncbi/dust.h
include/ncbi/dvncode.h
include/ncbi/echo_asn.h
include/ncbi/edutil.h
include/ncbi/ent2api.h
include/ncbi/entrez.h
include/ncbi/entrez2.h
include/ncbi/errdefn.h
include/ncbi/explore.h
include/ncbi/fastadl.h
include/ncbi/fdlKludge.h
include/ncbi/fdlobj.h
include/ncbi/fea2seg.h
include/ncbi/ffprint.h
include/ncbi/findrepl.h
include/ncbi/fstyle.h
include/ncbi/fstylep.h
include/ncbi/ftusrstr.h
include/ncbi/gapxdrop.h
include/ncbi/gather.h
include/ncbi/gbfeat.h
include/ncbi/gbftdef.h
include/ncbi/gbparlex.h
include/ncbi/id1.h
include/ncbi/gifgen.h
include/ncbi/glbpic.h
include/ncbi/gphdraw.h
include/ncbi/gtrdraw.h
include/ncbi/gxydraw.h
include/ncbi/id1arch.h
include/ncbi/id1gen.h
include/ncbi/id1map.h
include/ncbi/id2.h
include/ncbi/id2gen.h
include/ncbi/id2map.h
include/ncbi/id2sgen.h
include/ncbi/image.h
include/ncbi/imagelst.h
include/ncbi/import.h
include/ncbi/ingenext.h
include/ncbi/ingengraph.h
include/ncbi/ingenwin.h
include/ncbi/jsavlt.h
include/ncbi/jzcoll.h
include/ncbi/jzmisc.h
include/ncbi/layout.h
include/ncbi/legend.h
include/ncbi/list.h
include/ncbi/lnfac.h
include/ncbi/lookup.h
include/ncbi/lsqfetch.h
include/ncbi/mapcn3d.h
include/ncbi/mapgene.h
include/ncbi/mapmime.h
include/ncbi/mapmla.h
include/ncbi/mappingp.h
include/ncbi/mapproj.h
include/ncbi/mappubme.h
include/ncbi/maputil.h
include/ncbi/matrix.h
include/ncbi/mbalign.h
include/ncbi/mblast.h
include/ncbi/mconsist.h
include/ncbi/mdrcherr.h
include/ncbi/medarch.h
include/ncbi/medutil.h
include/ncbi/medview.h
include/ncbi/mimapi.h
include/ncbi/mkbioseq.h
include/ncbi/mmdb1.h
include/ncbi/mmdb2.h
include/ncbi/mmdb3.h
include/ncbi/mmdbapi.h
include/ncbi/mmdbapi1.h
include/ncbi/mmdbapi2.h
include/ncbi/mmdbapi3.h
include/ncbi/mmdbapi4.h
include/ncbi/mmdbdata.h
include/ncbi/mmdblocl.h
include/ncbi/motif.h
include/ncbi/ncbi.h
include/ncbi/ncbibs.h
include/ncbi/ncbibuf.h
include/ncbi/ncbicli.h
include/ncbi/ncbidraw.h
include/ncbi/ncbienv.h
include/ncbi/ncbierr.h
include/ncbi/ncbifile.h
include/ncbi/ncbigif.h
include/ncbi/ncbilang.h
include/ncbi/ncbilcl.h
include/ncbi/ncbimain.h
include/ncbi/ncbimath.h
include/ncbi/ncbimem.h
include/ncbi/ncbimisc.h
include/ncbi/ncbimsg.h
include/ncbi/ncbinet.h
include/ncbi/ncbiopt.h
include/ncbi/ncbiport.h
include/ncbi/ncbiprop.h
include/ncbi/ncbisam.h
include/ncbi/ncbisami.h
include/ncbi/ncbisgml.h
include/ncbi/ncbisock.h
include/ncbi/ncbisort.h
include/ncbi/ncbisrti.h
include/ncbi/ncbistd.h
include/ncbi/ncbistr.h
include/ncbi/ncbithr.h
include/ncbi/ncbitime.h
include/ncbi/ncbiurl.h
include/ncbi/ncbiwin.h
include/ncbi/ncbiwww.h
include/ncbi/needleman.h
include/ncbi/netblap3.h
include/ncbi/netcnfg.h
include/ncbi/netentr.h
include/ncbi/netlib.h
include/ncbi/netpriv.h
include/ncbi/netscape.h
include/ncbi/ni_asn.h
include/ncbi/ni_defin.h
include/ncbi/ni_encr.h
include/ncbi/ni_error.h
include/ncbi/ni_lib.h
include/ncbi/ni_lib_.h
include/ncbi/ni_list.h
include/ncbi/ni_msg.h
include/ncbi/ni_net.h
include/ncbi/ni_types.h
include/ncbi/objacces.h
include/ncbi/objalign.h
include/ncbi/objalignloc.h
include/ncbi/objall.h
include/ncbi/objbibli.h
include/ncbi/objblock.h
include/ncbi/objblst3.h
include/ncbi/objcdd.h
include/ncbi/objcn3d.h
include/ncbi/objcode.h
include/ncbi/objent2.h
include/ncbi/objentr.h
include/ncbi/objfdef.h
include/ncbi/objfeat.h
include/ncbi/objgbseq.h
include/ncbi/objgen.h
include/ncbi/objinsdseq.h
include/ncbi/objloc.h
include/ncbi/objmdrs.h
include/ncbi/objmedli.h
include/ncbi/objmgr.h
include/ncbi/objmim.h
include/ncbi/objmime.h
include/ncbi/objmla.h
include/ncbi/objmmdb1.h
include/ncbi/objmmdb2.h
include/ncbi/objmmdb3.h
include/ncbi/objneten.h
include/ncbi/objproj.h
include/ncbi/objprt.h
include/ncbi/objpub.h
include/ncbi/objpubd.h
include/ncbi/objpubme.h
include/ncbi/objres.h
include/ncbi/objscoremat.h
include/ncbi/objseq.h
include/ncbi/objspell.h
include/ncbi/objsset.h
include/ncbi/objsub.h
include/ncbi/objtax1.h
include/ncbi/objtax3.h
include/ncbi/objtseq.h
include/ncbi/odlbox.h
include/ncbi/panels.h
include/ncbi/parsegb.h
include/ncbi/pcre.h
include/ncbi/pcre_config.h
include/ncbi/pcre_internal.h
include/ncbi/pcreposix.h
include/ncbi/pdiagnos.h
include/ncbi/pgppop.h
include/ncbi/pictur3d.h
include/ncbi/picture.h
include/ncbi/picturep.h
include/ncbi/pmfapi.h
include/ncbi/pobutil.h
include/ncbi/posit.h
include/ncbi/ppict3d.h
include/ncbi/profiles.h
include/ncbi/prtgene.h
include/ncbi/prtutil.h
include/ncbi/prunebsc.h
include/ncbi/pubdesc.h
include/ncbi/puberr.h
include/ncbi/qblastapi.h
include/ncbi/readdb.h
include/ncbi/regex.h
include/ncbi/rpsutil.h
include/ncbi/saldist.h
include/ncbi/saled.h
include/ncbi/saledit.h
include/ncbi/salfiles.h
include/ncbi/salign.h
include/ncbi/salmedia.h
include/ncbi/salogif.h
include/ncbi/salpacc.h
include/ncbi/salpanel.h
include/ncbi/salparam.h
include/ncbi/salpedit.h
include/ncbi/salprop.h
include/ncbi/salpstat.h
include/ncbi/salptool.h
include/ncbi/salsa.h
include/ncbi/salsap.h
include/ncbi/salstruc.h
include/ncbi/salutil.h
include/ncbi/samutil.h
include/ncbi/satutil.h
include/ncbi/scoremat.h
include/ncbi/sdisplay.h
include/ncbi/sec.h
include/ncbi/seed.h
include/ncbi/seg.h
include/ncbi/seqanal.h
include/ncbi/seqcons.h
include/ncbi/seqfltr.h
include/ncbi/seqgraph.h
include/ncbi/seqgrphx.h
include/ncbi/seqmgr.h
include/ncbi/seqmtrx.h
include/ncbi/seqpanel.h
include/ncbi/seqpcc.h
include/ncbi/seqport.h
include/ncbi/seqscrl.h
include/ncbi/seqsplit.h
include/ncbi/seqsub.h
include/ncbi/sequtil.h
include/ncbi/shim3d.h
include/ncbi/simple.h
include/ncbi/simutil.h
include/ncbi/spell.h
include/ncbi/spellapi.h
include/ncbi/spidey.h
include/ncbi/splutil.h
include/ncbi/sqnutils.h
include/ncbi/strimprt.h
include/ncbi/strucapi.h
include/ncbi/stsutil.h
include/ncbi/subutil.h
include/ncbi/suggapi.h
include/ncbi/suggen.h
include/ncbi/suggest.h
include/ncbi/suggslp.h
include/ncbi/sugmap.h
include/ncbi/terr.h
include/ncbi/sugprefx.h
include/ncbi/tax1map.h
include/ncbi/tax3api.h
include/ncbi/taxblast.h
include/ncbi/taxext.h
include/ncbi/taxinc.h
include/ncbi/taxon1.h
include/ncbi/taxuerr.h
include/ncbi/taxutil.h
include/ncbi/tfuns.h
include/ncbi/thrdatd.h
include/ncbi/thrddecl.h
include/ncbi/toasn3.h
include/ncbi/tofasta.h
include/ncbi/tofile.h
include/ncbi/tomedlin.h
include/ncbi/toporg.h
include/ncbi/tree.h
include/ncbi/treemgr.h
include/ncbi/treeview.h
include/ncbi/treevint.h
include/ncbi/tsprintf.h
include/ncbi/txalign.h
include/ncbi/txclient.h
include/ncbi/txcommon.h
include/ncbi/udvdef.h
include/ncbi/udviewer.h
include/ncbi/udvseq.h
include/ncbi/undefwin.h
include/ncbi/urkbias.h
include/ncbi/urkcnsrt.h
include/ncbi/urkdust.h
include/ncbi/urkepi.h
include/ncbi/urkfltr.h
include/ncbi/urkgraph.h
include/ncbi/urkpcc.h
include/ncbi/urkptpf.h
include/ncbi/urksigu.h
include/ncbi/urktree.h
include/ncbi/urkutil.h
include/ncbi/urlquery.h
include/ncbi/utilpars.h
include/ncbi/utilpub.h
include/ncbi/valid.h
include/ncbi/validatr.h
include/ncbi/validerr.h
include/ncbi/vast2cn3d.h
include/ncbi/vast2mage.h
include/ncbi/vast2pdb.h
include/ncbi/vastlocl.h
include/ncbi/vastsrv.h
include/ncbi/vsm.h
include/ncbi/vecscnapi.h
include/ncbi/vecscrn.h
include/ncbi/vibdefns.h
include/ncbi/vibfltr.h
include/ncbi/vibforms.h
include/ncbi/vibgraph.h
include/ncbi/vibincld.h
include/ncbi/vibmouse.h
include/ncbi/vibpcc.h
include/ncbi/vibprocs.h
include/ncbi/vibrant.h
include/ncbi/vibrgb.h
include/ncbi/vibtree.h
include/ncbi/vibtypes.h
include/ncbi/viewer.h
include/ncbi/viewer3d.h
include/ncbi/viewerp.h
include/ncbi/viewmgr.h
include/ncbi/vsmfile.h
include/ncbi/vsmpriv.h
include/ncbi/vsmutil.h
include/ncbi/wwwblast.h
include/ncbi/xmlblast.h
lib/ncbi/libblast.a
lib/ncbi/libblastapi.a
lib/ncbi/libddvlib.a
lib/ncbi/libncbi.a
lib/ncbi/libncbiCacc.a
lib/ncbi/libncbiNacc.a
lib/ncbi/libncbiacc.a
lib/ncbi/libncbicdr.a
lib/ncbi/libncbicn3d.a
lib/ncbi/libncbidesk.a
lib/ncbi/libncbiid1.a
lib/ncbi/libncbimla.a
lib/ncbi/libncbimmdb.a
lib/ncbi/libncbiobj.a
lib/ncbi/libncbitool.a
lib/ncbi/libncbitxc2.a
lib/ncbi/libnetblast.a
lib/ncbi/libnetcli.a
lib/ncbi/libnetentr.a
lib/ncbi/libregexp.a
lib/ncbi/libvibgif.a
lib/ncbi/libvibnet.a
lib/ncbi/libvibrant.a
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%%PORTDOCS%%%%DOCSDIR%%/seq_install/seq_download.xml
%%PORTDOCS%%%%DOCSDIR%%/seq_install/seq_ftp_download.html
%%PORTDOCS%%%%DOCSDIR%%/seq_install/seq_ftp_download.xml
%%PORTDOCS%%%%DOCSDIR%%/seq_install/seq_install.html
%%PORTDOCS%%%%DOCSDIR%%/seq_install/seq_mac_download.css
%%PORTDOCS%%%%DOCSDIR%%/seq_install/seq_mac_download.html
%%PORTDOCS%%%%DOCSDIR%%/seq_install/sniff.js
%%PORTDOCS%%%%DOCSDIR%%/seq_install/seq_mac_download.xml
%%PORTDOCS%%%%DOCSDIR%%/seq_install/seq_trouble.css
%%PORTDOCS%%%%DOCSDIR%%/seq_install/seq_trouble.html
%%PORTDOCS%%%%DOCSDIR%%/seq_install/seq_trouble.xml
%%PORTDOCS%%%%DOCSDIR%%/seq_install/seq_unix_download.css
%%PORTDOCS%%%%DOCSDIR%%/seq_install/seq_unix_download.html
%%PORTDOCS%%%%DOCSDIR%%/seq_install/seq_unix_download.xml
%%PORTDOCS%%%%DOCSDIR%%/seq_install/seq_win_download.css
%%PORTDOCS%%%%DOCSDIR%%/seq_install/seq_win_download.html
%%PORTDOCS%%%%DOCSDIR%%/seq_install/seq_win_download.xml
%%PORTDOCS%%%%DOCSDIR%%/seq_install/sequin-icon-win.gif
%%PORTDOCS%%%%DOCSDIR%%/seq_install/spacer10.GIF
%%PORTDOCS%%%%DOCSDIR%%/seq_install/template.xml
%%PORTDOCS%%%%DOCSDIR%%/seq_install/win-ie.css
%%PORTDOCS%%%%DOCSDIR%%/seq_install/win-ie3.css
%%PORTDOCS%%%%DOCSDIR%%/seq_install/win-netscape.css
%%PORTDOCS%%%%DOCSDIR%%/sequin.htm
%%PORTDOCS%%%%DOCSDIR%%/tbl2asn.txt
%%DATADIR%%/BLOSUM45
%%DATADIR%%/BLOSUM62
%%DATADIR%%/BLOSUM80
%%DATADIR%%/ContactPotential
%%DATADIR%%/KSat.flt
%%DATADIR%%/KSchoth.flt
%%DATADIR%%/KSesigc.mat
%%DATADIR%%/KSesigl.mat
%%DATADIR%%/KSgc.flt
%%DATADIR%%/KShopp.flt
%%DATADIR%%/KSkyte.flt
%%DATADIR%%/KSmtidk.mat
%%DATADIR%%/KSmtk.mat
%%DATADIR%%/KSnsigc.mat
%%DATADIR%%/KSnsigl.mat
%%DATADIR%%/KSpcc.mat
%%DATADIR%%/KSpsigc.mat
%%DATADIR%%/KSpsigl.mat
%%DATADIR%%/KSpur.flt
%%DATADIR%%/KSpyr.flt
%%DATADIR%%/PAM30
%%DATADIR%%/PAM70
%%DATADIR%%/asn2ff.prt
%%DATADIR%%/blast.prt
%%DATADIR%%/bstdt.prt
%%DATADIR%%/bstdt.val
%%DATADIR%%/featdef.prt
%%DATADIR%%/featdef.val
%%DATADIR%%/gc.prt
%%DATADIR%%/gc.val
%%DATADIR%%/humrep.fsa
%%DATADIR%%/lineages.txt
%%DATADIR%%/makerpt.prt
%%DATADIR%%/ncbiendo.dat
%%DATADIR%%/ncbipnam.dat
%%DATADIR%%/ncbipros.dat
%%DATADIR%%/ncbiren.dat
%%DATADIR%%/ncbirnam.dat
%%DATADIR%%/objprt.prt
%%DATADIR%%/pubkey.enc
%%DATADIR%%/seqcode.prt
%%DATADIR%%/seqcode.val
%%DATADIR%%/sequin.hlp
%%DATADIR%%/sgmlbb.ent
%%DATADIR%%/taxlist.txt
@dirrm include/ncbi/connect
@dirrm include/ncbi
@dirrm lib/ncbi
%%PORTDOCS%%@dirrm %%DOCSDIR%%/blast
%%PORTDOCS%%@dirrm %%DOCSDIR%%/fa2htgs
%%PORTDOCS%%@dirrm %%DOCSDIR%%/images
%%PORTDOCS%%@dirrm %%DOCSDIR%%/man
%%PORTDOCS%%@dirrm %%DOCSDIR%%/seq_install
%%PORTDOCS%%@dirrm %%DOCSDIR%%
@dirrm %%DATADIR%%