mirror of
https://git.FreeBSD.org/ports.git
synced 2024-12-01 01:17:02 +00:00
18 lines
803 B
Plaintext
18 lines
803 B
Plaintext
GRAPPA: Genome Rearrangements Analysis under Parsimony and other
|
|
Phylogenetic Algorithms
|
|
|
|
This suite of programs implements the approach to phylogeny
|
|
reconstruction from gene orders described in the paper
|
|
Moret, B.M.E., Wyman, S., Bader, D.A., Warnow, T., and Yan, M.,
|
|
``A detailed study of breakpoint analysis,''
|
|
Proc. 6th Pacific Symp. Biocomputing PSB 2001, Hawaii (2001).
|
|
In its current state, "grappa" allows one to explore either the
|
|
space of all possible trees on n labelled leaves or the space of all
|
|
such trees that obey (are refinements of) a particular constraint tree.
|
|
|
|
"invdist" takes the first two genomes in the input file and returns
|
|
their inversion distance.
|
|
"distmat" prints the inversion and breakpoint distance matrices.
|
|
|
|
WWW: http://www.cs.unm.edu/~moret/GRAPPA/
|