John Marino b0b3dcecc0 biology/tinker: Regenerate distinfo to unbreak fetch ... Apparently the distfile was rerolled. The sizes of the file are only a few bytes apart. Since the master site never changed, it's reasonable just to regenerate the distinfo and bump the PORTREVISION. PR: 180664 Approved by: bapt/culot (mentors, implicit)		2013-08-18 11:38:34 +00:00
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adun
ariadne	. NOPORTDOCS -> PORT_OPTIONS:MDOCS;	2013-06-19 14:10:02 +00:00
artemis
avida	- Remove MAKE_JOBS_SAFE variable	2013-08-14 22:35:50 +00:00
babel	. NOPORTDOCS -> PORT_OPTIONS:MDOCS;	2013-06-19 19:01:47 +00:00
biococoa
biojava
blast
blat	. remove pkg-plist (along with the previous commit).	2013-06-19 18:44:32 +00:00
boinc-simap	Use bsd.port.options.mk instead of bsd.port.{pre|post}.mk	2013-04-29 12:20:35 +00:00
chemeq	. NOPORTDOCS -> PORT_OPTIONS:MDOCS;	2013-06-19 20:01:30 +00:00
clustalw
consed
crux	- adoption of optionsNG	2013-03-18 06:48:55 +00:00
dotter	- Mark broken checksum mismatch	2013-03-25 01:41:31 +00:00
embassy	Convert from USE_MOTIF to USES=motif	2013-07-09 21:49:35 +00:00
emboss	- update libdg to 2.1.0	2013-08-09 14:05:52 +00:00
fasta	Fix some PORT_OPTIONS conversions	2013-06-30 20:53:06 +00:00
fasta3	- Update to 36.3.6	2013-07-19 14:08:02 +00:00
fastdnaml	. NOPORTDOCS -> PORT_OPTIONS:MDOCS;	2013-06-19 13:35:55 +00:00
finchtv
fluctuate	. NOPORTDOCS -> PORT_OPTIONS:MDOCS;	2013-06-19 12:43:28 +00:00
garlic
genpak	- update libdg to 2.1.0	2013-08-09 14:05:52 +00:00
gff2ps	. NOPORTDOCS -> PORT_OPTIONS:MDOCS;	2013-06-19 18:56:37 +00:00
gmap
gperiodic	. NOPORTDOCS -> PORT_OPTIONS:MDOCS;	2013-06-19 19:05:47 +00:00
grappa
hmmer	- Convert to new perl framework	2013-08-03 08:45:51 +00:00
iolib	- Update to 7.31.0	2013-07-11 16:26:26 +00:00
jalview
lagan	- Convert to new perl framework	2013-08-03 13:44:00 +00:00
lamarc	- Remove MAKE_JOBS_SAFE variable	2013-08-14 22:35:50 +00:00
libgenome	biology/libgenome: Mark jobs unsafe	2013-08-14 09:53:39 +00:00
libsbml	- adoption of optionsNG	2013-03-18 06:50:12 +00:00
linux-foldingathome
mafft
mapm3
migrate	- Update to 3.5.1	2013-05-26 07:49:47 +00:00
molden	- Update to 5.0.6	2013-04-26 06:57:37 +00:00
mopac	- Remove MAKE_JOBS_SAFE variable	2013-08-14 22:35:50 +00:00
mrbayes
mummer
muscle
ncbi-toolkit	Convert from USE_MOTIF to USES=motif	2013-07-09 21:49:35 +00:00
njplot	Convert from USE_MOTIF to USES=motif	2013-07-10 07:33:24 +00:00
ortep3	. introdice optionsNG to the port;	2013-06-19 20:06:59 +00:00
p5-AcePerl	- Convert to new perl framework	2013-08-02 18:52:07 +00:00
p5-Bio-ASN1-EntrezGene
p5-Bio-Das	- Convert to new perl framework	2013-08-02 18:52:07 +00:00
p5-Bio-Das-Lite	- Convert to new perl framework	2013-08-02 18:52:07 +00:00
p5-Bio-GFF3	- Pet portlint: remove blank line among *_DEPENDS	2013-08-06 13:03:54 +00:00
p5-Bio-Glite	- Convert to new perl framework	2013-08-02 18:52:07 +00:00
p5-Bio-Graphics	- Convert to new perl framework	2013-08-02 18:52:07 +00:00
p5-Bio-MAGETAB	- Convert to new perl framework	2013-08-02 18:52:07 +00:00
p5-Bio-NEXUS	- Convert to new perl framework	2013-08-02 18:52:07 +00:00
p5-Bio-Phylo	- Convert to new perl framework	2013-08-02 18:52:07 +00:00
p5-Bio-SCF	- Convert to new perl framework	2013-08-06 08:50:49 +00:00
p5-bioperl	- Convert to new perl framework	2013-08-06 08:50:49 +00:00
p5-bioperl-run
paml	- Trim Makefile headers	2013-06-01 14:22:35 +00:00
phd2fasta	Remove unneeded escaping	2013-04-26 16:23:13 +00:00
phrap
phred
phylip	- Remove MAKE_JOBS_SAFE variable	2013-08-14 22:35:50 +00:00
phyml	- Remove MAKE_JOBS_SAFE variable	2013-08-14 22:35:50 +00:00
platon
plink
plinkseq	Fix build with protobuf-2.5.0	2013-03-21 14:09:22 +00:00
povchem	- remove empty files	2013-02-15 08:57:19 +00:00
primer3
protomol	- adoption of optionsNG	2013-03-18 06:54:39 +00:00
psi88	. NOPORTDOCS -> PORT_OPTIONS:MDOCS;	2013-06-19 19:54:13 +00:00
py-biopython
pycogent
pyfasta	- Trim Makefile headers	2013-06-01 14:22:35 +00:00
pymol
python-nexus
rasmol	Convert to USES=imake	2013-06-28 18:32:25 +00:00
recombine	. NOPORTDOCS -> PORT_OPTIONS:MDOCS;	2013-06-19 19:15:14 +00:00
ruby-bio	- adoption of optionsNG	2013-03-18 06:55:42 +00:00
seaview	- Remove MAKE_JOBS_SAFE variable	2013-08-14 22:35:50 +00:00
seqan	Replace USE_GCC=4.6+ and USE_GCC=4.4+ by USE_GCC=yes.	2013-08-17 16:27:24 +00:00
seqio	Remove stale (since r321246) pkg-plist file.	2013-06-19 21:04:36 +00:00
sim4	. add license (GPLv2);	2013-06-19 16:36:53 +00:00
ssaha
t_coffee	- Remove MAKE_JOBS_SAFE variable	2013-08-14 22:35:50 +00:00
tinker	biology/tinker: Regenerate distinfo to unbreak fetch	2013-08-18 11:38:34 +00:00
treepuzzle
treeviewx
tRNAscan-SE	- Convert to new perl framework	2013-08-03 08:45:51 +00:00
ugene	- Remove MAKE_JOBS_SAFE variable	2013-08-14 22:35:50 +00:00
velvet
wise	- Convert to new perl framework	2013-08-03 13:44:00 +00:00
xmolwt	- Remove MAKE_JOBS_SAFE variable	2013-08-14 22:35:50 +00:00
Makefile	KDE3 and QT3 expired on 2013-07-01, remove these ports.	2013-07-26 19:19:20 +00:00