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15 lines
733 B
Plaintext
15 lines
733 B
Plaintext
BLAT is a bioinformatics software tool which performs rapid mRNA/DNA and
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cross-species protein alignments. BLAT is more accurate and 500 times
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faster than popular existing tools for mRNA/DNA alignments and 50 times
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faster for protein alignments at sensitivity settings typically used
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when comparing vertebrate sequences. (Source: Kent, W.J. 2002. BLAT --
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The BLAST-Like Alignment Tool. Genome Research 4: 656-664.
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http://dx.doi.org/10.1101/gr.229202)
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BLAT is not BLAST. DNA BLAT works by keeping an index of the entire
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genome (but not the genome itself) in memory. Since the index takes up a
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bit less than a gigabyte of RAM, BLAT can deliver high performance on a
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reasonably priced Linux box.
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WWW: http://users.soe.ucsc.edu/~kent/
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