Tijl Coosemans 564a799c71 Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most cases ... USE_GCC=yes has been omitted though. Remove USE_FORTRAN handling from bsd.port.mk and bsd.gcc.mk. Minor cleanups in some ports like USE_GMAKE, NOPORTDOCS,... Exp-run: bdrewery Approved by: portmgr (bdrewery)		2014-02-16 17:15:31 +00:00
..
ariadne
artemis	Support stage	2014-01-20 23:06:48 +00:00
avida
babel	Support stage	2014-01-15 22:44:13 +00:00
biococoa
biojava	According to the Porter's Handbook (5.12.2.3.) default options must be added to	2014-02-10 13:54:26 +00:00
blast
blat
boinc-simap	Drop maintainership BOINC ports, old machine running them gave up.	2014-02-04 17:54:29 +00:00
chemeq	Stage support	2014-01-18 15:55:42 +00:00
clustalw
consed	According to the Porter's Handbook (5.12.2.3.) default options must be added to	2014-02-10 13:54:26 +00:00
crux	Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most cases	2014-02-16 17:15:31 +00:00
embassy	Reduce over inclusion of bsd.port.mk	2014-01-15 22:48:32 +00:00
emboss
fasta	Reduce over inclusion of bsd.port.mk	2014-01-15 22:50:18 +00:00
fasta3
fastdnaml	Support staging	2014-02-16 11:32:43 +00:00
finchtv	According to the Porter's Handbook (5.12.2.3.) default options must be added to	2014-02-10 13:54:26 +00:00
fluctuate	Support staging	2014-02-16 11:35:00 +00:00
garlic
genpak	According to the Porter's Handbook (5.12.2.3.) default options must be added to	2014-02-10 13:54:26 +00:00
gff2ps
gmap
gperiodic
grappa
hmmer
iolib	Support stage	2014-01-20 17:02:11 +00:00
jalview	Fix properties on pkg-plist	2014-01-21 23:18:05 +00:00
lagan
lamarc
libgenome	biology/libgenome: Fix build on dragonfly	2014-02-05 23:47:48 +00:00
libsbml	Reduce over inclusion of bsd.port.mk	2014-01-15 22:50:50 +00:00
linux-foldingathome
mafft
mapm3	- Fix build with clang	2014-01-12 19:07:28 +00:00
migrate	- Stagify; cleanup Makefile and reorder the knobs a bit	2014-01-29 12:08:29 +00:00
molden
mopac
mrbayes
mummer	According to the Porter's Handbook (5.12.2.3.) default options must be added to	2014-02-10 13:54:26 +00:00
muscle
ncbi-toolkit
njplot	According to the Porter's Handbook (5.12.2.3.) default options must be added to	2014-02-10 13:54:26 +00:00
ortep3
p5-AcePerl	- Stage support	2014-02-10 06:56:52 +00:00
p5-Bio-ASN1-EntrezGene	- add stage support	2014-01-06 09:57:19 +00:00
p5-Bio-Das	- support stage	2014-01-05 12:07:20 +00:00
p5-Bio-Das-Lite	- fix pkg-plist	2014-01-30 07:34:25 +00:00
p5-Bio-GFF3	- Update to 1.9	2014-01-23 03:28:37 +00:00
p5-Bio-Glite	- support stage	2014-01-05 12:07:20 +00:00
p5-Bio-Graphics
p5-Bio-MAGETAB
p5-Bio-NEXUS	- Stage support	2014-01-31 12:47:06 +00:00
p5-Bio-Phylo	- support stage	2014-01-05 12:07:20 +00:00
p5-Bio-SCF	- add stage support	2014-01-06 09:44:19 +00:00
p5-bioperl	According to the Porter's Handbook (5.12.2.3.) default options must be added to	2014-02-10 13:54:26 +00:00
p5-bioperl-run	According to the Porter's Handbook (5.12.2.3.) default options must be added to	2014-02-10 13:54:26 +00:00
paml	According to the Porter's Handbook (5.12.2.3.) default options must be added to	2014-02-10 13:54:26 +00:00
phd2fasta
phrap
phred
phylip
phyml	- Stage support	2014-01-31 12:32:55 +00:00
platon
plink	Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most cases	2014-02-16 17:15:31 +00:00
plinkseq	- Stage support	2014-01-31 12:33:11 +00:00
povchem
primer3
protomol	Reduce over inclusion of bsd.port.mk	2014-01-15 22:51:26 +00:00
psi88
py-biopython	Python cleanup:	2014-01-13 21:00:02 +00:00
pycogent
pyfasta	- Convert to PYDISTUTILS_AUTOPLIST	2014-01-31 12:31:24 +00:00
pymol
python-nexus	- Convert to PYDISTUTILS_AUTOPLIST	2014-01-31 12:30:39 +00:00
rasmol
recombine	- Support staging	2014-02-16 11:39:42 +00:00
ruby-bio	Reduce over inclusion of bsd.port.mk	2014-01-15 22:52:28 +00:00
seaview
seqan
seqio	Support staging	2014-02-16 11:42:09 +00:00
seqtools	Fix old makeplist bug.	2014-02-12 14:03:25 +00:00
sim4	Support staging	2014-02-16 11:43:07 +00:00
ssaha	Deprecate ports unmaintained for which distillator is not able to find public distfiles	2014-02-07 18:50:30 +00:00
t_coffee
tinker
treepuzzle
treeviewx
tRNAscan-SE	biology/tRNAscan-SE: Fix hardcoded perl path	2014-02-05 23:44:50 +00:00
ugene	Unbreak the fetch: one of the documentation PDF files was rerolled.	2014-01-30 13:38:26 +00:00
velvet	According to the Porter's Handbook (5.12.2.3.) default options must be added to	2014-02-10 13:54:26 +00:00
wise	biology/wise: Add dragonfly support	2014-02-05 23:42:06 +00:00
xmolwt
Makefile