Kris Kennaway de78dd974b Schedule these broken ports for removal on 2007-04-10 if they are still ... broken at that time and no fix has been submitted.		2007-02-11 01:23:35 +00:00
..
adun	- add category gnustep	2007-01-31 18:18:14 +00:00
ariadne	Remove USE_REINPLACE from all categories starting with B	2006-05-03 23:26:35 +00:00
artemis
avida	Mark as broken for i386 4.x	2006-08-10 23:02:49 +00:00
babel
belvu	Distfile now checksums successfully.	2006-10-14 16:13:49 +00:00
biococoa	- add category gnustep	2007-01-31 18:18:14 +00:00
biojava	Schedule these broken ports for removal on 2007-04-10 if they are still	2007-02-11 01:23:35 +00:00
blast	- Update PORTREVISION to match latest release (see main web site)	2006-06-11 09:13:43 +00:00
blat	Add blat 33, a fast tool for local sequence similarity searches.	2006-03-15 10:26:12 +00:00
boinc-simap	- Add hmmer 5.09 application	2006-10-10 11:31:42 +00:00
chemeq	- Resurrect, update to version 1.5 (literally 1.50 since I wanted to avoid	2006-01-19 19:47:59 +00:00
clustalw	SHA256ify	2006-01-22 08:34:46 +00:00
crimap	Reset tonymaher@optusnet.com.au due to maintainer-timeouts and no response	2006-12-26 12:46:34 +00:00
distribfold	USE_SIZE was obsoleted in rev. 1.484 of bsd.port.mk more than	2006-06-11 15:29:01 +00:00
dna-qc	Reset tonymaher@optusnet.com.au due to maintainer-timeouts and no response	2006-12-26 12:46:34 +00:00
dotter	Unmark BROKEN, it seems to be caused by a stale distfile on ftp-master.	2006-08-03 20:28:00 +00:00
embassy	For EMBOSS:	2006-03-31 09:43:21 +00:00
emboss	For EMBOSS:	2006-03-31 09:43:21 +00:00
fasta	Update to 21.u1.d1 (fixes fetch).	2006-05-07 13:04:20 +00:00
fasta3	- Update to 34.t26.b3	2006-10-31 09:02:04 +00:00
fastdnaml
finchtv	SHA256ify	2006-01-22 08:34:46 +00:00
fluctuate	Fix master site and un-deprecate	2007-01-25 11:01:25 +00:00
garlic	Remove USE_REINPLACE from all categories starting with B	2006-05-03 23:26:35 +00:00
genpak
gff2ps	. change dependencies: shells/bash2 -> shells/bash;	2007-01-16 18:21:00 +00:00
gmap	Add gmap 2006.04.21, a Genomic Mapping and Alignment Program for mRNA	2006-09-29 04:05:55 +00:00
gperiodic	Chase the GNOME X11BASE to LOCALBASE move, and fix the build with the	2006-10-14 08:54:54 +00:00
grappa	Reset dbader@ece.unm.edu due to timeouts and no response to email.	2006-12-13 13:20:20 +00:00
hmmer	SHA256ify	2006-01-22 08:34:46 +00:00
jalview	Jalview is a multiple alignment editor written in Java. It is used widely in a	2006-02-13 09:42:13 +00:00
kinemage	- Respect X11BASE	2006-11-27 22:03:22 +00:00
L-Breeder	- Use features of bsd.wx.mk, especially USE_WX	2006-12-01 07:39:02 +00:00
lagan	Add lagan 1.2, efficient tools for large-scale multiple alignments of	2006-03-16 22:31:26 +00:00
lamarc	Get rid of biology/coalesce dependency, it is deprecated and will be removed	2007-01-25 11:10:43 +00:00
libgenome	Use libtool port instead of included version to avoid objformat a.out botch	2007-02-01 02:42:05 +00:00
linux-foldingathome	Folding@Home is a distributed computing project -- people from through out the	2006-08-28 22:33:45 +00:00
lsysexp	- Add MASTER_SITE	2006-06-06 10:07:55 +00:00
mafft	- Update to 5.743	2006-03-19 12:59:16 +00:00
migrate	- Update to 2.1.3	2006-12-10 12:39:32 +00:00
molden	- Fix typo	2007-01-23 13:05:24 +00:00
mopac	- Fix pkg-plist [1]	2006-07-10 05:32:58 +00:00
nab	- Update to 5.1.2	2006-12-23 21:45:17 +00:00
ncbi-toolkit	- Respect X11BASE	2006-12-09 07:49:55 +00:00
ortep3	Fix build.	2007-01-19 06:41:03 +00:00
p5-AcePerl	- Mark broken on amd64 < 6. We got following	2006-12-04 04:13:30 +00:00
p5-Bio-ASN1-EntrezGene	SHA256ify	2006-01-22 08:34:46 +00:00
p5-Bio-Das	- Update to 1.03	2006-12-19 06:47:45 +00:00
p5-Bio-Phylo	Update to v0.15	2006-12-27 18:58:26 +00:00
p5-bioperl	SHA256ify	2006-01-22 08:34:46 +00:00
p5-bioperl-devel	Replace ugly "@unexec rmdir %D... 2>/dev/null || true" with @dirrmtry	2006-01-22 01:29:46 +00:00
p5-bioperl-run	Bioperl-run contain modules that provides a PERL interface to various	2006-05-02 21:30:08 +00:00
p5-bioperl-run-devel	Bioperl-run contain modules that provides a PERL interface to various	2006-05-02 21:31:43 +00:00
paml	- Update to 3.15	2006-05-20 18:52:19 +00:00
phylip	Update to 3.66	2007-01-27 21:23:52 +00:00
platon	* Migrate to gfortran.	2007-01-17 05:30:10 +00:00
povchem	Remove USE_REINPLACE from all categories starting with B	2006-05-03 23:26:35 +00:00
primer3	- Update to 1.0.1	2006-12-29 23:40:53 +00:00
protomol	Add protomol 2.0.3, OO, component based, framework for molecular	2006-05-05 20:09:54 +00:00
psi88	Build fix.	2007-01-29 02:13:52 +00:00
py-biopython	- Update to 1.42	2006-10-31 13:25:21 +00:00
pymol	Update to 0.99rc6.	2007-02-09 00:11:54 +00:00
rasmol
recombine	Fix master sites, un-deprecate and update biology/recombine to 1.41.	2007-01-25 12:22:50 +00:00
ruby-bio	- Update to 1.0.0	2006-04-25 22:09:29 +00:00
seaview	Chase pdf library and bump PORTREVISION.	2006-10-09 08:18:35 +00:00
seqio	Reset tonymaher@optusnet.com.au due to maintainer-timeouts and no response	2006-12-26 12:46:34 +00:00
sim4	Remove USE_REINPLACE from all categories starting with B	2006-05-03 23:26:35 +00:00
t_coffee	- Project moves to a new home. Change MASTER_SITES and WWW	2007-01-22 23:22:53 +00:00
tinker	* Migrate to gfortran.	2007-01-12 12:21:21 +00:00
treepuzzle	SHA256ify	2006-01-22 08:34:46 +00:00
treeviewx	- Allow wxWidgets 2.6 alongside 2.4, this port works with both	2006-10-09 07:16:37 +00:00
tRNAscan-SE	SHA256ify	2006-01-22 08:34:46 +00:00
wise	Reset tonymaher@optusnet.com.au due to maintainer-timeouts and no response	2006-12-26 12:46:34 +00:00
xdrawchem	Mark as BROKEN on sparc64 due to internal compiler error.	2006-07-03 22:22:09 +00:00
xmolwt	Reset rmiya@cc.hirosaki-u.ac.jp who has not responded to email asking about	2006-04-05 06:13:46 +00:00
Makefile	Remove expired leaf port:	2007-01-25 11:25:40 +00:00