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7eed5932e0
freebsd-ports/science
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Dmitry Sivachenko 7eed5932e0 Allow to choose between cblas and atlas ports. 
Submitted by:	glebius
2014-02-18 08:30:53 +00:00
..
2d-rewriter According to the Porter's Handbook (5.12.2.3.) default options must be added to 2014-02-10 13:54:26 +00:00
2dhf Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most cases 2014-02-16 17:15:31 +00:00
abinit Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most cases 2014-02-16 17:15:31 +00:00
afni Update math/R to 3.0.2 patched r64207 and math/R-cran-SuppDists to 1.1-9.1; 2013-11-13 08:19:34 +00:00
avogadro Chase boost and icu bump 2014-02-07 11:44:08 +00:00
bddsolve Chase boost and icu bump 2014-02-07 11:44:08 +00:00
bft - Stage support 2014-02-03 09:44:35 +00:00
bodr - Update to version 10 2013-11-02 17:34:59 +00:00
brian Python cleanup: 2014-01-13 21:00:02 +00:00
buddy Reset maintainer for llwang@infor.org 2013-12-18 10:38:33 +00:00
cdcl
cdf Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most cases 2014-02-16 17:15:31 +00:00
cdo
cgnslib Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most cases 2014-02-16 17:15:31 +00:00
checkmol
chemical-mime-data
chemtool
chemtool-devel science/chemtool-devel: Unbreak on FreeBSD 10+ 2013-12-25 22:08:13 +00:00
clhep
colt
crf++ Fix properties on pkg-plist 2014-01-21 23:40:21 +00:00
dcl Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most cases 2014-02-16 17:15:31 +00:00
devisor
dlpoly-classic Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most cases 2014-02-16 17:15:31 +00:00
dtiquery
ecs According to the Porter's Handbook (5.12.2.3.) default options must be added to 2014-02-10 13:54:26 +00:00
elmer-eio Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most cases 2014-02-16 17:15:31 +00:00
elmer-hutiter Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most cases 2014-02-16 17:15:31 +00:00
elmer-matc - Stage support 2014-02-03 13:57:46 +00:00
elmer-meshgen2d
elmergrid
elmerpost science/elmer(post,-matc): Use modern fortran, unbreak, undeprecate 2013-12-26 02:47:52 +00:00
epte - Stage support 2014-02-06 10:41:38 +00:00
euler
fastcap
fasthenry
felt
fisicalab Update core GNUstep libraries and fisicalab to latest versions 2014-01-12 22:54:58 +00:00
flounder Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
fvcom Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most cases 2014-02-16 17:15:31 +00:00
fvcom-mpi
fvm Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
g3data
gamess Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most cases 2014-02-16 17:15:31 +00:00
gchemutils Add patch to unbreak with libc++ 10.0+. 2013-12-03 22:10:25 +00:00
gdis Explicitly link libraries on 10 unmaintained ports 2013-10-07 23:40:23 +00:00
getdp Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most cases 2014-02-16 17:15:31 +00:00
ghemical Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most cases 2014-02-16 17:15:31 +00:00
ghmm Fix properties on pkg-plist 2014-01-21 23:40:21 +00:00
gnudatalanguage Python cleanup: 2014-01-13 21:00:02 +00:00
gramps Python cleanup: 2014-01-13 21:00:02 +00:00
gromacs - USES=fortran. 2013-12-27 16:39:52 +00:00
gsmc - Enable staging 2013-12-30 22:50:38 +00:00
gtamsanalyzer
gwyddion - Update from 2.33 to 2.34 2014-01-03 00:08:56 +00:00
h5utils
harminv Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most cases 2014-02-16 17:15:31 +00:00
hdf New LIB_DEPENDS syntax, USES=fortran, staging. 2013-12-27 16:55:28 +00:00
hdf5 Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most cases 2014-02-16 17:15:31 +00:00
hdf5-18 Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most cases 2014-02-16 17:15:31 +00:00
hdf-java Back to the futur 2014-02-10 13:27:09 +00:00
hs-bio - Stagify lang/ghc and all the Haskell Cabal ports 2014-01-09 21:32:12 +00:00
InsightToolkit Now when it builds on 10.x, drop maintainership 2013-12-21 00:28:51 +00:00
isaac-cfd - USES=fortran gmake. 2013-12-27 20:26:21 +00:00
jmol - Update to version 13.2.3 [1] 2013-11-07 16:53:33 +00:00
jstrack - Convert to USES=tk 2014-01-14 10:30:24 +00:00
kalzium - Update from 1.1.0 to 1.1.1 2013-12-18 23:33:20 +00:00
kst2 - Bump PORTREVISION for astro/cfitsio shlib change 2014-02-05 20:02:34 +00:00
lamprop
libctl Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most cases 2014-02-16 17:15:31 +00:00
libghemical Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most cases 2014-02-16 17:15:31 +00:00
libint
libkml - Update LICENSE 2013-12-26 21:48:54 +00:00
liblinear
liboglappth - Stage support 2014-02-03 14:31:32 +00:00
libquantum - Stage support 2014-02-03 13:57:46 +00:00
libsvm
libsvm-python
linsmith - Remove manual creation and removal of share/applications, as it's now in the mtree (categories starting with [st]) 2013-10-22 14:01:38 +00:00
massxpert - Remove manual creation and removal of share/applications, as it's now in the mtree (categories starting with [st]) 2013-10-22 14:01:38 +00:00
mbdyn Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most cases 2014-02-16 17:15:31 +00:00
mcstas Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
medit
meep Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most cases 2014-02-16 17:15:31 +00:00
mei - Upgrade to 1.0.4; 2013-11-26 21:30:22 +00:00
minc Part 2 at removing now useless FETCH_ARGS redifition 2014-01-03 01:12:59 +00:00
minc2 - Downgrade to the latest stable release; 2014-01-29 17:31:04 +00:00
mol2ps
mpb - New LIB_DEPENDS syntax. 2013-12-27 21:28:47 +00:00
mpqc Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most cases 2014-02-16 17:15:31 +00:00
mpqc-mpich
ncs Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most cases 2014-02-16 17:15:31 +00:00
netcdf Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most cases 2014-02-16 17:15:31 +00:00
netcdf3-ftn - Fix PKGNAME collision 2013-11-06 17:35:50 +00:00
netcdf4 Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most cases 2014-02-16 17:15:31 +00:00
netcdf-ftn - Remove LATEST_LINK 2013-12-10 19:18:39 +00:00
nifticlib Update to v2.0.0 and patch for clang. 2014-01-29 21:44:59 +00:00
openbabel Add upstream patch to fix the build with libc++. 2013-11-13 15:49:25 +00:00
p5-Algorithm-SVMLight Support staging. 2014-02-06 14:07:44 +00:00
p5-Chemistry-3DBuilder - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-Bond-Find - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-Canonicalize - add stage support 2014-01-29 17:18:46 +00:00
p5-Chemistry-Elements Support STAGEDIR. 2013-11-06 01:32:11 +00:00
p5-Chemistry-File-MDLMol - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-File-Mopac - add stage support 2014-01-29 17:18:46 +00:00
p5-Chemistry-File-PDB - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-File-SLN - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-File-SMARTS - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-File-SMILES - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-File-VRML - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-File-XYZ - add stage support 2014-01-29 17:18:46 +00:00
p5-Chemistry-FormulaPattern - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-InternalCoords - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-Isotope - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-MacroMol Support STAGEDIR. 2013-11-06 01:32:11 +00:00
p5-Chemistry-MidasPattern - add stage support 2014-01-29 17:18:46 +00:00
p5-Chemistry-Mok - Stage support 2014-02-01 14:41:07 +00:00
p5-Chemistry-Mol Support STAGEDIR. 2013-11-06 01:32:11 +00:00
p5-Chemistry-Pattern - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-Reaction - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-Ring - add stage support 2014-01-29 17:00:41 +00:00
p5-Geo-BUFR Support STAGEDIR. 2013-11-06 01:32:11 +00:00
p5-Geo-Coordinates-Converter Support STAGEDIR. 2013-11-06 01:32:11 +00:00
p5-Geo-Coordinates-Converter-iArea
p5-Geo-ReadGRIB - add stage support 2014-01-29 17:00:41 +00:00
p5-Geo-WebService-Elevation-USGS Support STAGEDIR. 2013-11-06 01:32:11 +00:00
p5-PerlMol - add stage support 2014-01-29 17:00:41 +00:00
p5-Physics-Unit Support staging. 2014-02-06 14:10:06 +00:00
paje
paraview Update freetype to 2.5.2. 2013-12-24 21:22:21 +00:00
peekabot Chase boost and icu bump 2014-02-07 11:44:08 +00:00
pnetcdf Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most cases 2014-02-16 17:15:31 +00:00
psi3 Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most cases 2014-02-16 17:15:31 +00:00
psychopy Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
py-coards science/py-coards: Modernise and enable STAGE support 2014-01-26 00:52:15 +00:00
py-DendroPy
py-h5py science/py-h5py: update to 2.2.1 2013-12-13 19:59:42 +00:00
py-hcluster Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
py-mdp science/py-mdp: support staging 2013-12-29 11:39:54 +00:00
py-mlpy Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
py-netCDF4 science/py-netCDF4: support staging 2013-12-29 11:41:17 +00:00
py-obspy Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most cases 2014-02-16 17:15:31 +00:00
py-paida
py-pupynere science/py-pupynere: Modernise: Enable STAGE, AUTOPLIST and more 2014-02-03 11:35:53 +00:00
py-pyaixi Python cleanup: 2014-01-13 21:00:02 +00:00
py-pydap science/py-pydap: update to 3.1.1 2013-11-29 11:40:24 +00:00
py-pydicom
py-scikit-learn Allow to choose between cblas and atlas ports. 2014-02-18 08:30:53 +00:00
py-scimath - Update WWW: 2013-11-20 20:51:25 +00:00
py-scipy Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most cases 2014-02-16 17:15:31 +00:00
py-ws2300
pybrain Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
pycdf Python cleanup: 2014-01-13 21:00:02 +00:00
pynn Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
pyteomics Update to 2.2.1 2013-11-29 11:57:18 +00:00
pyteomics.biolccc Use PYDISTUTILS_AUTOPLIST 2014-01-23 08:42:15 +00:00
qcl - Update to version 0.6.3 2013-10-30 17:57:33 +00:00
qtresistors - Convert to USES=qmake (and other USES while I'm here) 2013-11-22 12:55:00 +00:00
R-cran-AMORE Fix DISTNAME 2014-02-01 14:02:24 +00:00
R-cran-bayesm Fix DISTNAME 2014-02-01 13:58:01 +00:00
R-cran-DCluster Convert Mk/bsd.cran.mk to the Uses framework. 2013-12-28 10:28:40 +00:00
R-cran-e1071 - Update to 1.6-2 2014-01-12 12:19:47 +00:00
R-cran-eco Fix DISTNAME 2014-02-01 13:49:09 +00:00
R-cran-Epi Convert Mk/bsd.cran.mk to the Uses framework. 2013-12-28 10:28:40 +00:00
R-cran-epicalc Convert Mk/bsd.cran.mk to the Uses framework. 2013-12-28 10:28:40 +00:00
R-cran-snow Convert Mk/bsd.cran.mk to the Uses framework. 2013-12-28 10:28:40 +00:00
R-cran-som Convert Mk/bsd.cran.mk to the Uses framework. 2013-12-28 10:28:40 +00:00
ruby-dcl Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
ruby-gphys Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
ruby-netcdf Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
rubygem-ai4r - Add stage support 2013-10-30 02:56:33 +00:00
sigrok-cli - Update to 0.2.2 2014-01-27 19:15:36 +00:00
silo - Update from 4.9 to 4.9.1 2013-12-18 23:27:40 +00:00
simlib
step Add my upstream commit that fixes the build with libc++. 2013-11-03 22:48:12 +00:00
svmlight Fix properties on pkg-plist 2014-01-21 23:40:21 +00:00
szip
udunits - Strip shared library 2013-10-10 14:32:08 +00:00
v_sim Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most cases 2014-02-16 17:15:31 +00:00
veusz - Update to 1.19.1 2013-12-22 14:33:44 +00:00
vmd
voro++
x11iraf
xfce4-equake-plugin - Update to 1.3.4 2014-01-31 12:27:20 +00:00
xmakemol
xmds
Makefile The sigrok project aims at creating a portable, cross-platform, 2014-01-03 00:13:11 +00:00