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mirror of https://git.FreeBSD.org/ports.git synced 2024-11-23 00:43:28 +00:00
freebsd-ports/biology
Sunpoet Po-Chuan Hsieh 1b0d3f744b - Add WWW
- Use single space after WWW:
- Remove Author line
2013-08-29 17:16:52 +00:00
..
ariadne . NOPORTDOCS -> PORT_OPTIONS:MDOCS; 2013-06-19 14:10:02 +00:00
artemis
avida - Remove MAKE_JOBS_SAFE variable 2013-08-14 22:35:50 +00:00
babel . NOPORTDOCS -> PORT_OPTIONS:MDOCS; 2013-06-19 19:01:47 +00:00
biococoa Update to latest GNUstep core libraries. 2013-08-28 18:26:01 +00:00
biojava
blast
blat . remove pkg-plist (along with the previous commit). 2013-06-19 18:44:32 +00:00
boinc-simap
chemeq . NOPORTDOCS -> PORT_OPTIONS:MDOCS; 2013-06-19 20:01:30 +00:00
clustalw
consed
crux
dotter
embassy Convert from USE_MOTIF to USES=motif 2013-07-09 21:49:35 +00:00
emboss - update libdg to 2.1.0 2013-08-09 14:05:52 +00:00
fasta Fix some PORT_OPTIONS conversions 2013-06-30 20:53:06 +00:00
fasta3 - Update to 36.3.6 2013-07-19 14:08:02 +00:00
fastdnaml . NOPORTDOCS -> PORT_OPTIONS:MDOCS; 2013-06-19 13:35:55 +00:00
finchtv
fluctuate
garlic
genpak - update libdg to 2.1.0 2013-08-09 14:05:52 +00:00
gff2ps . NOPORTDOCS -> PORT_OPTIONS:MDOCS; 2013-06-19 18:56:37 +00:00
gmap
gperiodic . NOPORTDOCS -> PORT_OPTIONS:MDOCS; 2013-06-19 19:05:47 +00:00
grappa
hmmer - Convert to new perl framework 2013-08-03 08:45:51 +00:00
iolib - Update to 7.31.0 2013-07-11 16:26:26 +00:00
jalview
lagan - Convert to new perl framework 2013-08-03 13:44:00 +00:00
lamarc - Remove MAKE_JOBS_SAFE variable 2013-08-14 22:35:50 +00:00
libgenome biology/libgenome: Mark jobs unsafe 2013-08-14 09:53:39 +00:00
libsbml
linux-foldingathome
mafft
mapm3
migrate
molden
mopac - Remove MAKE_JOBS_SAFE variable 2013-08-14 22:35:50 +00:00
mrbayes
mummer
muscle
ncbi-toolkit Convert from USE_MOTIF to USES=motif 2013-07-09 21:49:35 +00:00
njplot Convert from USE_MOTIF to USES=motif 2013-07-10 07:33:24 +00:00
ortep3 . introdice optionsNG to the port; 2013-06-19 20:06:59 +00:00
p5-AcePerl - Add WWW 2013-08-29 17:16:52 +00:00
p5-Bio-ASN1-EntrezGene
p5-Bio-Das - Convert to new perl framework 2013-08-02 18:52:07 +00:00
p5-Bio-Das-Lite - Convert to new perl framework 2013-08-02 18:52:07 +00:00
p5-Bio-GFF3 - Pet portlint: remove blank line among *_DEPENDS 2013-08-06 13:03:54 +00:00
p5-Bio-Glite - Convert to new perl framework 2013-08-02 18:52:07 +00:00
p5-Bio-Graphics - Convert to new perl framework 2013-08-02 18:52:07 +00:00
p5-Bio-MAGETAB - Convert to new perl framework 2013-08-02 18:52:07 +00:00
p5-Bio-NEXUS - Convert to new perl framework 2013-08-02 18:52:07 +00:00
p5-Bio-Phylo - Convert to new perl framework 2013-08-02 18:52:07 +00:00
p5-Bio-SCF - Convert to new perl framework 2013-08-06 08:50:49 +00:00
p5-bioperl - Convert to new perl framework 2013-08-06 08:50:49 +00:00
p5-bioperl-run
paml
phd2fasta
phrap
phred
phylip - Remove MAKE_JOBS_SAFE variable 2013-08-14 22:35:50 +00:00
phyml - Remove MAKE_JOBS_SAFE variable 2013-08-14 22:35:50 +00:00
platon
plink
plinkseq
povchem
primer3 Make sure to respect CC and CXX, this fixes the build on head without gcc 2013-08-28 06:04:51 +00:00
protomol
psi88 . NOPORTDOCS -> PORT_OPTIONS:MDOCS; 2013-06-19 19:54:13 +00:00
py-biopython
pycogent
pyfasta
pymol
python-nexus
rasmol Convert to USES=imake 2013-06-28 18:32:25 +00:00
recombine . NOPORTDOCS -> PORT_OPTIONS:MDOCS; 2013-06-19 19:15:14 +00:00
ruby-bio
seaview - Remove MAKE_JOBS_SAFE variable 2013-08-14 22:35:50 +00:00
seqan Replace USE_GCC=4.6+ and USE_GCC=4.4+ by USE_GCC=yes. 2013-08-17 16:27:24 +00:00
seqio Remove stale (since r321246) pkg-plist file. 2013-06-19 21:04:36 +00:00
sim4 . add license (GPLv2); 2013-06-19 16:36:53 +00:00
ssaha
t_coffee - Remove MAKE_JOBS_SAFE variable 2013-08-14 22:35:50 +00:00
tinker biology/tinker: Regenerate distinfo to unbreak fetch 2013-08-18 11:38:34 +00:00
treepuzzle
treeviewx
tRNAscan-SE - Convert to new perl framework 2013-08-03 08:45:51 +00:00
ugene - Remove MAKE_JOBS_SAFE variable 2013-08-14 22:35:50 +00:00
velvet
wise - Convert to new perl framework 2013-08-03 13:44:00 +00:00
xmolwt - Remove MAKE_JOBS_SAFE variable 2013-08-14 22:35:50 +00:00
Makefile - Disconnect ports removed in r325546 2013-08-29 02:28:57 +00:00