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freebsd-ports/biology
History
Tim Bishop b9073575f7 - New upstream version; two patches incorporated. 
PR:		90140
Submitted by:	Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
Approved by:	clement (mentor)
2005-12-10 14:04:33 +00:00
..
ariadne Add ariadne 1.3, programs to compare protein sequences and 2004-06-22 14:29:59 +00:00
artemis - Fix fetch problems 2005-12-05 16:57:26 +00:00
avida - Add SHA256 2005-11-24 00:04:00 +00:00
babel - Add SHA256 2005-11-24 00:04:00 +00:00
biojava - Update biology/biojava to 1.30 2004-11-22 15:47:58 +00:00
blast From the PR: 2005-03-18 13:01:07 +00:00
chemeq - Mark it as DEPRECATED - master site disapeared 2005-11-11 14:40:25 +00:00
clustalw
coalesce - Add SHA256 2005-11-24 00:04:00 +00:00
crimap SIZEify (maintainer timeout) 2004-03-31 03:12:58 +00:00
deft - Mark it as DEPRECATED - master site disapeared 2005-11-11 14:40:32 +00:00
distribfold - Add SHA256 2005-11-24 00:04:00 +00:00
dna-qc BROKEN on alpha 5.x: does not compile 2004-02-23 03:54:36 +00:00
embassy - Update to 2.10.0 2005-05-29 18:26:25 +00:00
emboss Mass-conversion to the USE_AUTOTOOLS New World Order. The code present 2005-11-15 06:52:12 +00:00
fasta - Add SHA256 2005-11-24 00:04:00 +00:00
fasta3 Chase mastersite and fix checksum to unbreak. (Changes are inclusion of a 2004-07-01 03:02:23 +00:00
fastdnaml - Add SHA256 2005-11-24 00:04:00 +00:00
finchtv Update to 1.3.1 2005-12-06 21:23:04 +00:00
flip Mark DEPRECATED since upstream is unmaintained and mastersite is gone. 2005-10-29 14:09:33 +00:00
fluctuate - Add SHA256 2005-11-24 00:04:00 +00:00
garlic At Kris's request, back out the MACHINE_ARCH spelling correction until 2005-04-12 03:26:56 +00:00
genpak - Add SHA256 2005-11-24 00:04:00 +00:00
gff2ps [PATCH] biology/gff2ps distsite fix 2004-06-01 02:23:41 +00:00
gperiodic - Add SHA256 2005-11-24 00:04:00 +00:00
grappa - update grappa to 2.0 2005-04-15 18:48:57 +00:00
hmmer - Remove a junk white space. 2004-11-25 22:58:29 +00:00
kinemage SIZEify (maintainer timeout) 2004-03-31 03:12:58 +00:00
L-Breeder - Mark it as DEPRECATED (mastersite disapeared) 2005-11-11 14:29:09 +00:00
lamarc With portmgr hat on, reset inactive maintainer. These ports are now up 2004-11-20 08:09:49 +00:00
libgenome - Add SHA256 2005-11-24 00:04:00 +00:00
lsysexp Bump PORTREVISION to chase the glib20 shared library update. 2005-11-05 05:22:06 +00:00
migrate - Add SHA256 2005-11-24 00:04:00 +00:00
molden - Unbreak by updating to 4.4 2005-12-01 14:42:44 +00:00
mopac At Kris's request, back out the MACHINE_ARCH spelling correction until 2005-04-12 03:26:56 +00:00
nab - Fix the packing list [1] 2005-04-29 22:14:29 +00:00
ncbi-toolkit - Update to 20050605 2005-10-11 22:33:34 +00:00
ortep3 - Update MASTER_SITES 2004-06-02 03:32:57 +00:00
p5-AcePerl - Change maintainer's email address. 2005-04-11 20:34:36 +00:00
p5-Bio-ASN1-EntrezGene Add p5-Bio-ASN1-EntrezGene, a Regular expression-based Perl Parser for 2005-10-15 20:09:50 +00:00
p5-Bio-Das Add the right MASTER_SITE_SUBDIR, so that this port is fetchable from 2005-11-26 03:40:59 +00:00
p5-bioperl Add conflicst: 2005-12-04 22:11:44 +00:00
p5-bioperl-devel Add conflicts: 2005-12-04 22:12:48 +00:00
paml Update to 3.14b 2005-11-10 01:21:42 +00:00
phylip Bump PORTEPOCH. 3.6 < 3.62 2005-04-22 12:08:12 +00:00
platon At Kris's request, back out the MACHINE_ARCH spelling correction until 2005-04-12 03:26:56 +00:00
povchem - Drop old povchem.c checksum 2005-11-24 00:02:29 +00:00
primer3 - Update to 1.0.0 2005-06-13 04:31:34 +00:00
psi88 - Fix MASTER_SITES 2004-05-23 07:36:35 +00:00
py-biopython Update to 1.41 2005-11-11 01:15:35 +00:00
pymol Update to 0.9.8 2005-10-10 09:08:22 +00:00
rasmol - Add SHA256 2005-11-24 00:04:00 +00:00
recombine - Add SHA256 2005-11-24 00:04:00 +00:00
ruby-bio - Add SHA256 2005-11-24 00:04:00 +00:00
seaview - New upstream version; two patches incorporated. 2005-12-10 14:04:33 +00:00
seqio SIZEify (maintainer timeout) 2004-03-31 03:12:58 +00:00
sim4 - Add SHA256 2005-11-24 00:04:00 +00:00
t_coffee - Update to 3.18 to make fetchable again 2005-12-06 15:10:08 +00:00
tinker - Add SHA256 2005-11-24 00:04:00 +00:00
treepuzzle At Kris's request, back out the MACHINE_ARCH spelling correction until 2005-04-12 03:26:56 +00:00
treeviewx Update to 0.5.1 2005-12-06 02:00:55 +00:00
tRNAscan-SE SIZEify (maintainer timeout) 2004-03-31 03:12:58 +00:00
wise SIZEify (maintainer timeout) 2004-03-31 03:12:58 +00:00
xdrawchem Checking MACHINE_ARCH is deprecated. 2005-09-23 16:21:45 +00:00
xmolwt SIZEify (maintainer timeout) 2004-03-31 03:12:58 +00:00
Makefile - Re-add p5-bioperl-devel, development version of biology/p5-bioperl 2005-12-02 21:40:12 +00:00