Max Brazhnikov ffd97a0193 - convert USE_CMAKE to USES ... - while here clean up some ports from CMAKE_VERBOSE, which is intended for users Approved by: portmgr (miwi)		2013-03-22 20:06:14 +00:00
..
adun
ariadne	- Reassign to the heap at maintainer's request	2012-10-01 14:45:16 +00:00
artemis	Decommissioning java 1.5 (EOLed since October 2009):	2012-12-10 11:25:27 +00:00
avida	- convert USE_CMAKE to USES	2013-03-22 20:06:14 +00:00
babel	- Mark conflict with science/openbabel	2012-12-11 14:24:51 +00:00
biococoa	- cleanup comments	2012-10-13 13:39:56 +00:00
biojava	Remove hardcoded extract dependency on diablo-jdk16, directly use USE_ZIP	2012-12-11 07:26:38 +00:00
blast	- Take maintainership	2012-10-01 14:55:55 +00:00
blat	- Reassign to the heap at maintainer's request	2012-10-01 14:45:16 +00:00
boinc-simap	Remove compatibility with FreeBSD 7.X	2013-03-06 23:31:58 +00:00
chemeq	Convert USE_BISON to USES= bison	2013-03-08 11:32:11 +00:00
clustalw
consed
crux	- adoption of optionsNG	2013-03-18 06:48:55 +00:00
dotter	- Reassign to the heap at maintainer's request	2012-10-01 14:45:16 +00:00
embassy	- adopt optionsNG	2013-03-18 23:35:01 +00:00
emboss	- Take maintainership	2012-10-01 14:55:55 +00:00
fasta
fasta3	- Take maintainership	2012-10-01 14:55:55 +00:00
fastdnaml
finchtv	- Reassign to the heap at maintainer's request	2012-10-01 14:45:16 +00:00
fluctuate
garlic
genpak
gff2ps
gmap
gperiodic
grappa
hmmer	- Take maintainership	2012-10-01 14:55:55 +00:00
iolib
jalview	Decommissioning java 1.5 (EOLed since October 2009):	2012-12-10 11:25:27 +00:00
lagan	- Update to version 2.0	2012-11-15 07:04:29 +00:00
lamarc	- Fix build with clang	2012-12-03 11:27:47 +00:00
libgenome
libsbml	- adoption of optionsNG	2013-03-18 06:50:12 +00:00
linux-foldingathome
mafft
mapm3
migrate
molden	Update to 5.0.4	2012-12-14 17:47:16 +00:00
mopac
mrbayes
mummer
muscle
ncbi-toolkit	- Update to 2012.06.20	2013-03-14 05:27:58 +00:00
njplot
ortep3
p5-AcePerl
p5-Bio-ASN1-EntrezGene
p5-Bio-Das	Cleanup supporting perl version 5.8 and 5.10,	2012-12-17 15:39:36 +00:00
p5-Bio-Das-Lite
p5-Bio-GFF3	- Update to 1.5	2012-12-16 04:22:15 +00:00
p5-Bio-Glite	- Reset maintainer to perl@	2012-10-30 02:03:29 +00:00
p5-Bio-Graphics	Add missing item to pkg-plist reported by QAT but not reported by poudriere.	2013-03-03 15:22:43 +00:00
p5-Bio-MAGETAB	- Update to 1.27	2013-02-05 14:45:14 +00:00
p5-Bio-NEXUS
p5-Bio-Phylo	- Update to 0.52 [1]	2013-02-16 14:58:51 +00:00
p5-Bio-SCF
p5-bioperl	- Take maintainership	2012-10-01 14:55:55 +00:00
p5-bioperl-run
paml
phd2fasta
phrap
phred
phylip
phyml	- Update to 20121109.	2013-02-04 10:07:30 +00:00
platon
plink	Add new ports biology/plink [1] and biology/plinkseq [2]:	2012-09-27 09:59:25 +00:00
plinkseq	Fix build with protobuf-2.5.0	2013-03-21 14:09:22 +00:00
povchem	- remove empty files	2013-02-15 08:57:19 +00:00
primer3	- Take maintainership	2012-10-01 14:55:55 +00:00
protomol	- adoption of optionsNG	2013-03-18 06:54:39 +00:00
psi88
py-biopython	- update to 1.60	2012-09-25 08:06:42 +00:00
pycogent	- Update to 1.5.3	2012-10-08 03:17:02 +00:00
pyfasta
pymol
python-nexus
rasmol
recombine
ruby-bio	- adoption of optionsNG	2013-03-18 06:55:42 +00:00
seaview	Bump PORTREVISION after DESKTOP_ENTRIES update	2013-01-23 15:00:18 +00:00
seqan	- convert USE_CMAKE to USES	2013-03-22 20:06:14 +00:00
seqio
sim4
ssaha	- Reassign to the heap at maintainer's request	2012-10-01 14:45:16 +00:00
t_coffee	- Update to 9.03.	2013-01-14 08:04:38 +00:00
tinker	- Update to version 6.1.01	2012-12-01 00:00:43 +00:00
treepuzzle
treeviewx	- Reassign to the heap at maintainer's request	2012-10-01 14:45:16 +00:00
tRNAscan-SE
ugene	Unbreak on 7.X and i386 systems.	2013-02-25 13:00:15 +00:00
velvet
wise	- Update to 2.4.1	2013-03-02 14:50:25 +00:00
xdrawchem	- Strip header at request of original creator	2013-01-27 05:55:20 +00:00
xmolwt	- Support CC properly	2012-12-07 22:22:06 +00:00
Makefile	Add Unipro UGENE, a free open-source crowss-platform bioinformatics software.	2013-02-23 04:50:48 +00:00