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freebsd-ports/biology
History
Wesley Shields a8dc52d3dc - Roll back to 4.6 as 4.7 is the development version and is constantly being 
re-rolled.
- Move post-patch target into files/patch-xwin.c to remove sed invocation.
- Respect NOPORTDATA and DATADIR.
- Bring files/patch-aa back (to preserve history) and retire patch-makefile.
- Fixup files/patch-xwin.c so it applies cleanly to this version.
2008-11-11 02:21:28 +00:00
..
adun - update PORTSCOUT 2008-08-12 17:13:44 +00:00
ariadne
artemis Bump portrevision due to upgrade of devel/gettext. 2008-06-06 13:08:29 +00:00
avida - Update to 2.8.1 2008-10-23 14:13:37 +00:00
babel
belvu
biococoa Bump portrevision due to upgrade of devel/gettext. 2008-06-06 13:08:29 +00:00
biojava Bump portrevision due to upgrade of devel/gettext. 2008-06-06 13:08:29 +00:00
blast Remove always-false/true conditions based on OSVERSION 500000 2007-10-04 00:15:01 +00:00
blat - Remove USE_GCC where it can be satisfied with base compiler on following 2008-07-25 14:34:52 +00:00
boinc-simap Bump portrevision due to upgrade of devel/gettext. 2008-06-06 13:08:29 +00:00
chemeq Migration from bison 1.x to 2.x 2007-10-17 10:13:01 +00:00
clustalw - Update to 2.0.6 2008-04-29 12:58:52 +00:00
consed Teach the building cluster that these ports are not to be build 2008-05-25 23:05:10 +00:00
crimap - Fix the build with GCC 4.2 2007-06-18 21:35:50 +00:00
distribfold
dna-qc
dotter Umark BROKEN, stale distfile removed from ftp-master. 2008-01-27 11:26:35 +00:00
embassy - Update to 5.0.0 2008-04-13 07:22:42 +00:00
emboss - Replace SF with second working master site 2008-04-17 17:06:48 +00:00
fasta - Update mastersite. 2008-04-18 15:36:54 +00:00
fasta3 - Update to 35.3.6 2008-04-10 08:09:10 +00:00
fastdnaml
finchtv
fluctuate
garlic - Remove unneeded dependency from gtk12/gtk20 [1] 2008-04-19 17:56:05 +00:00
genpak - Remove duplicates from MAKE_ENV after inclusion of CC and CXX in default MAKE_ENV 2008-07-25 09:08:42 +00:00
gff2ps Bump portrevision due to upgrade of devel/gettext. 2008-06-06 13:08:29 +00:00
gmap Update CONFIGURE_ARGS for how we pass CONFIGURE_TARGET to configure script. 2008-08-21 06:18:49 +00:00
gperiodic Bump portrevision due to upgrade of devel/gettext. 2008-06-06 13:08:29 +00:00
grappa
hmmer
jalview Bump portrevision due to upgrade of devel/gettext. 2008-06-06 13:08:29 +00:00
kinemage - Remove unneeded dependency from gtk12/gtk20 [1] 2008-04-19 17:56:05 +00:00
L-Breeder Bump portrevision due to upgrade of devel/gettext. 2008-06-06 13:08:29 +00:00
lagan - Remove duplicates from MAKE_ENV after inclusion of CC and CXX in default MAKE_ENV 2008-07-25 09:08:42 +00:00
lamarc - Update to 2.1.3 2008-07-31 16:18:42 +00:00
libgenome Update CONFIGURE_ARGS for how we pass CONFIGURE_TARGET to configure script. 2008-08-21 06:18:49 +00:00
linux-foldingathome - Fix typo in WWW 2007-10-04 07:28:40 +00:00
lsysexp Bump portrevision due to upgrade of devel/gettext. 2008-06-06 13:08:29 +00:00
mafft - Chase fasta3 update 2008-04-01 22:24:51 +00:00
mapm3 MAPMAKER/EXP is a linkage analysis package designed to help construct primary 2008-04-06 04:49:05 +00:00
migrate - File was rerolled for a small bugfix. 2008-02-27 07:34:21 +00:00
molden - Roll back to 4.6 as 4.7 is the development version and is constantly being 2008-11-11 02:21:28 +00:00
mopac Add -lf2c, this is the correct dependency. Bump portrevision. 2008-08-22 22:20:05 +00:00
mrbayes - Update maintainer's email address 2008-05-17 16:52:34 +00:00
mummer MUMmer is a modular system for the rapid whole genome alignment of finished 2007-12-14 20:54:47 +00:00
muscle - Update maintainer's email address 2008-05-17 16:52:34 +00:00
ncbi-toolkit - Remove unneeded dependency from gtk12/gtk20 [1] 2008-04-19 17:56:05 +00:00
njplot - Update maintainer's email address 2008-05-17 16:52:34 +00:00
ortep3 - Remove unneeded dependency from gtk12/gtk20 [1] 2008-04-19 17:56:05 +00:00
p5-AcePerl Update my ports to my freebsd address 2008-07-23 02:43:55 +00:00
p5-Bio-ASN1-EntrezGene - Take advantage of CPAN macro from bsd.sites.mk, change ${MASTER_SITE_PERL_CPAN} to CPAN. 2008-04-17 14:30:31 +00:00
p5-Bio-Das - Update to 1.09 2008-05-31 13:46:14 +00:00
p5-Bio-Phylo Reset aaron's port maintainerships due to many maintainer-timeouts. 2008-04-29 05:27:09 +00:00
p5-bioperl - Take advantage of CPAN macro from bsd.sites.mk, change ${MASTER_SITE_PERL_CPAN} to CPAN. 2008-04-17 14:30:31 +00:00
p5-bioperl-devel - Unbreak 2008-10-21 15:24:46 +00:00
p5-bioperl-run - Take advantage of CPAN macro from bsd.sites.mk, change ${MASTER_SITE_PERL_CPAN} to CPAN. 2008-04-17 14:30:31 +00:00
p5-bioperl-run-devel Welcome bsd.perl.mk. Add support for constructs such as USE_PERL5=5.8.0+. 2007-09-08 01:12:10 +00:00
paml - Update to 4.1 2008-09-30 08:54:55 +00:00
phd2fasta Teach the building cluster that these ports are not to be build 2008-05-25 23:05:10 +00:00
phrap Teach the building cluster that these ports are not to be build 2008-05-25 23:05:10 +00:00
phred Teach the building cluster that these ports are not to be build 2008-05-25 23:05:10 +00:00
phylip - Fix build 2008-08-27 16:21:06 +00:00
platon - Remove unneeded dependency from gtk12/gtk20 [1] 2008-04-19 17:56:05 +00:00
povchem - Welcome X.org 7.2 \o/. 2007-05-19 20:36:56 +00:00
primer3 - Update to 1.1.3 2008-04-04 20:46:35 +00:00
protomol - Remove USE_GCC where it can be satisfied with base compiler on following 2008-07-25 14:34:52 +00:00
psi88 Now we use USE_FORTRAN=yes to use FORTRAN compiler. 2007-07-12 06:41:22 +00:00
py-biopython - Update to 1.48 2008-10-11 15:26:33 +00:00
pymol - Add missing dependens 2008-03-27 11:20:17 +00:00
rasmol - Remove unneeded dependency from gtk12/gtk20 [1] 2008-04-19 17:56:05 +00:00
recombine
ruby-bio - Update to 1.1.0 2007-10-24 01:38:51 +00:00
seaview - Remove unneeded dependency from gtk12/gtk20 [1] 2008-04-19 17:56:05 +00:00
seqio - respect NOPORTEXAMPLES/NOPORTDOCS and fix plist 2008-07-12 06:28:25 +00:00
sim4
ssaha - Fix plist files installation. 2008-06-21 02:46:21 +00:00
t_coffee - Respect PORTDOCS/PORTEXAMPLES 2008-09-09 13:43:15 +00:00
tinker - Remove unneeded dependency from gtk12/gtk20 [1] 2008-04-19 17:56:05 +00:00
treepuzzle Update CONFIGURE_ARGS for how we pass CONFIGURE_TARGET to configure script. 2008-08-21 06:18:49 +00:00
treeviewx Bump portrevision due to upgrade of devel/gettext. 2008-06-06 13:08:29 +00:00
tRNAscan-SE - Update MASTER_SITES and WWW: line 2008-05-22 00:49:42 +00:00
wise
xdrawchem Update CONFIGURE_ARGS for how we pass CONFIGURE_TARGET to configure script. 2008-08-21 06:18:49 +00:00
xmolwt Bump portrevision due to upgrade of devel/gettext. 2008-06-06 13:08:29 +00:00
Makefile - Delete biology/nab port after being marked DEPRECATED for three months 2008-07-24 12:17:12 +00:00