mirror of
https://git.FreeBSD.org/ports.git
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77 lines
2.3 KiB
Makefile
77 lines
2.3 KiB
Makefile
PORTNAME= igv
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DISTVERSIONPREFIX= v
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DISTVERSION= 2.9.4
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CATEGORIES= biology java
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MASTER_SITES= http://software.broadinstitute.org/software/igv/sites/cancerinformatics.org.igv/files/images/:img
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DISTFILES= tools.png:img
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DIST_SUBDIR= ${PORTNAME}-${DISTVERSION}
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EXTRACT_ONLY= ${DISTNAME}${EXTRACT_SUFX}
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MAINTAINER= yuri@FreeBSD.org
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COMMENT= Visualization tool for genomic datasets
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LICENSE= MIT
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LICENSE_FILE= ${WRKSRC}/license.txt
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BROKEN_FreeBSD_11= FAILURE: Build failed with an exception.
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BUILD_DEPENDS= openjfx14>0:java/openjfx14 \
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gradle:devel/gradle6
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RUN_DEPENDS= openjfx14>0:java/openjfx14
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USES= gettext-runtime
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USE_JAVA= yes
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USE_GITHUB= yes
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GH_ACCOUNT= igvteam
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JAVA_VERSION= 11
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NO_ARCH= yes
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MAKE_ENV+= GRADLE_USER_HOME=${WRKDIR}
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SUB_FILES= ${PORTNAME}.sh
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DESKTOP_ENTRIES="IGV" "Integrative Genomics Viewer" "${PREFIX}/share/pixmaps/igv.png" "${PORTNAME}" \
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"Biology;Science;" true
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# to rebuild the deps archive:
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# 1. set DEV_UPDATE_MODE=yes
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# 2. make makesum build
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# 3. upload the *-deps archive
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# 4. set DEV_UPDATE_MODE=no
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# 5. make clean makesum
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DEV_UPDATE_MODE= no
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DEPS_CACHE_DIR= ${WRKDIR}
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MAKE_ENV+= JAVA_HOME=${JAVA_HOME}
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SUB_LIST= JAVA_HOME=${JAVA_HOME}
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.if (${DEV_UPDATE_MODE} == "yes")
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post-build:
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@cd ${DEPS_CACHE_DIR} && ${TAR} czf ${DISTDIR}/${DIST_SUBDIR}/${PORTNAME}-${DISTVERSION}-deps${EXTRACT_SUFX} gradle-${PORTNAME}
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@${ECHO} "(!!!) Please upload the deps archive: ${DISTDIR}/${DIST_SUBDIR}/${PORTNAME}-${DISTVERSION}-deps${EXTRACT_SUFX}"
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.else
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MASTER_SITES+= LOCAL/yuri/:deps
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DISTFILES+= ${PORTNAME}-${DISTVERSION}-deps${EXTRACT_SUFX}:deps
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GRADLE_ARGS= --offline
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post-extract: # need a separate extract step because the cache is in /tmp, and not under work/ like with maven
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@cd ${DEPS_CACHE_DIR} && ${TAR} xzf ${DISTDIR}/${DIST_SUBDIR}/${PORTNAME}-${DISTVERSION}-deps${EXTRACT_SUFX}
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.endif
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do-build:
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cd ${WRKSRC} && ${SETENV} ${MAKE_ENV} gradle \
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--gradle-user-home ${DEPS_CACHE_DIR}/gradle-${PORTNAME} --project-cache-dir ${DEPS_CACHE_DIR}/gradle-${PORTNAME} \
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${GRADLE_ARGS} --build-cache --stacktrace createDist
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do-install:
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${INSTALL_SCRIPT} ${WRKDIR}/${PORTNAME}.sh ${STAGEDIR}${PREFIX}/bin/${PORTNAME}
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cd ${WRKSRC}/build/IGV-dist/lib && ${COPYTREE_SHARE} ./ ${STAGEDIR}${JAVAJARDIR}/${PORTNAME}
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${INSTALL_DATA} ${DISTDIR}/${DIST_SUBDIR}/tools.png ${STAGEDIR}${PREFIX}/share/pixmaps/${PORTNAME}.png
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.include <bsd.port.mk>
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