Antoine Brodin 9d9aec7824 Stage support		2013-12-30 18:08:14 +00:00
..
ariadne	Stage support	2013-11-12 21:54:36 +00:00
artemis
avida	- Fix build with clang	2013-11-27 16:07:51 +00:00
babel
biococoa
biojava
blast
blat	Add stage support	2013-11-12 22:02:02 +00:00
boinc-simap	The hmmer binary was renamed upstream to indicate that it is now an	2013-12-29 10:41:50 +00:00
chemeq
clustalw	- Fix build with clang/libc++.	2013-12-20 15:29:07 +00:00
consed
crux	In preparation for making libtool generate libraries with a sane name, fix all	2013-12-11 14:43:51 +00:00
embassy	In preparation for making libtool generate libraries with a sane name, fix all	2013-12-11 14:43:51 +00:00
emboss	In preparation for making libtool generate libraries with a sane name, fix all	2013-12-11 14:43:51 +00:00
fasta
fasta3	Update to version 36.3.6d	2013-10-29 19:32:15 +00:00
fastdnaml
finchtv
fluctuate
garlic
genpak	Respect PORT_OPTIONS:MDOCS	2013-12-09 01:28:41 +00:00
gff2ps
gmap	Support stage	2013-12-10 17:21:46 +00:00
gperiodic
grappa	- Respect CC/CFLAGS	2013-12-20 13:27:13 +00:00
hmmer	Stage support	2013-12-30 18:08:14 +00:00
iolib	In preparation for making libtool generate libraries with a sane name, fix all	2013-12-11 14:43:51 +00:00
jalview
lagan	- Fix build	2013-11-27 13:16:47 +00:00
lamarc	biology/lamarc: fix build on current	2013-11-26 15:37:05 +00:00
libgenome
libsbml	In preparation for making libtool generate libraries with a sane name, fix all	2013-12-11 14:43:51 +00:00
linux-foldingathome
mafft
mapm3
migrate
molden	- USES=fortran gmake.	2013-12-29 14:30:20 +00:00
mopac	In preparation for making libtool generate libraries with a sane name, fix all	2013-12-11 14:43:51 +00:00
mrbayes	Support stage	2013-12-10 17:54:12 +00:00
mummer
muscle
ncbi-toolkit
njplot
ortep3	USES=fortran, fix LDFLAGS, staging.	2013-12-17 21:24:17 +00:00
p5-AcePerl
p5-Bio-ASN1-EntrezGene
p5-Bio-Das
p5-Bio-Das-Lite
p5-Bio-GFF3	- Update to 1.8	2013-11-02 19:55:32 +00:00
p5-Bio-Glite
p5-Bio-Graphics
p5-Bio-MAGETAB	- Update to 1.28	2013-11-28 15:05:08 +00:00
p5-Bio-NEXUS
p5-Bio-Phylo
p5-Bio-SCF
p5-bioperl
p5-bioperl-run
paml
phd2fasta
phrap
phred
phylip
phyml
platon	Version 2013.12.12, USES=fortran, staging.	2013-12-17 21:55:24 +00:00
plink	Fix the build with more standards-compliant compilers such as GCC 4.7. [1]	2013-12-13 09:34:40 +00:00
plinkseq	In preparation for making libtool generate libraries with a sane name, fix all	2013-12-11 14:43:51 +00:00
povchem	Convert to USES=dos2unix	2013-11-18 13:45:44 +00:00
primer3
protomol	In preparation for making libtool generate libraries with a sane name, fix all	2013-12-11 14:43:51 +00:00
psi88	USES=fortran, staging, miscellaneous cleanups.	2013-12-18 16:23:08 +00:00
py-biopython
pycogent
pyfasta
pymol	In preparation for making libtool generate libraries with a sane name, fix all	2013-12-11 14:43:51 +00:00
python-nexus
rasmol
recombine
ruby-bio
seaview	In preparation for making libtool generate libraries with a sane name, fix all	2013-12-11 14:43:51 +00:00
seqan
seqio
seqtools	biology/seqtools: update to 4.24	2013-12-24 17:23:23 +00:00
sim4
ssaha
t_coffee	USES=fortran, staging.	2013-12-18 17:24:51 +00:00
tinker	- biology/tinker: USES=fortran, staging.	2013-12-18 18:27:04 +00:00
treepuzzle
treeviewx
tRNAscan-SE
ugene	- Install official UGENE documentation (PDF)	2013-11-01 15:20:28 +00:00
velvet
wise
xmolwt
Makefile	biology/seqtools: Tools for visualising sequence alignments	2013-11-10 11:01:02 +00:00