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96 lines
3.0 KiB
Makefile
96 lines
3.0 KiB
Makefile
# New ports collection makefile for: wise
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# Date created: 26 February 2002
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# Whom: Tony Maher <tonym@biolateral.com.au>
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#
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# $FreeBSD$
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#
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PORTNAME= wise
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PORTVERSION= 2.2.0
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CATEGORIES= biology
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MASTER_SITES= ftp://ftp.sanger.ac.uk/pub/birney/wise2/
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DISTNAME= ${PORTNAME}${PORTVERSION}
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MAINTAINER= tonym@biolateral.com.au
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WRKTOP= ${WRKDIR}/${DISTNAME}
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WRKSRC= ${WRKTOP}/src
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USE_REINPLACE= yes
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MAKEFILE= makefile
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#
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# Actually want an 'ALL_TARGET = all perl' which then requires
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# 'USE_PERL5= yes' but the perl sub-build is currently broken.
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# The perl stuff is only so you can use the base libraries/functions
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# from perl scripts. This is extra, independent functionality for the
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# port and not required for the base system which are C applications.
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# When the perl part is fixed, it will require an install line
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# something like '@cd ${WRKSRC}/perl/Wise2; ${MAKE} install'
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#
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BINFILES= dba dnal estwise estwisedb genewise genewisedb \
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genomewise psw pswdb
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DATAFILES= BLOSUM30.bla BLOSUM45.bla BLOSUM62.bla BLOSUM80.bla \
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aa.rnd blosum30.bla blosum62.bla cb.tmf codon.table \
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gene.stat gon120.bla gon160.bla gon200.bla gon250.bla \
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gon350.bla human.gf human.gp human.stats idenity.bla \
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methods pb.gf pombe.gf tm.pri wise.2 wise.per worm.gf
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DOCFILES= README apiend.tex appendix.tex dynamite.tex \
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genewise21.eps genewise6.eps gettex.pl makefile \
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wise2.tex wise2api.tex wise3arch.tex
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EXFILES= README db.hmm hn_est.fa human.genomic \
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keratin_intron.human keratin_intron.mouse pep.fa \
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road.pep rrm.HMM vav.dna xeno.cdna xeno.pep
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#
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# Top level makefile does not respect CFLAGS. Fixing it means
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# having to fix some of the sub-directory makefiles.
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# Note: some makefiles are ok and know that '-c' does not belong
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# in CFLAGS and are part of the rule.
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#
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post-configure:
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@${REINPLACE_CMD} \
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-e s'#^CFLAGS = -c -O#CFLAGS ?= -c -O#;' \
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-e s'#\tcsh welcome.csh##;' \
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${WRKSRC}/${MAKEFILE}
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@${REINPLACE_CMD} \
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-e s'#CFLAGS) $?#CFLAGS) -c $?#;' \
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${WRKSRC}/base/${MAKEFILE}
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@${REINPLACE_CMD} \
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-e s'#INCFLAGS) $?#INCFLAGS) -c $?#;' \
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${WRKSRC}/dynlibsrc/${MAKEFILE}
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@${REINPLACE_CMD} \
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-e s'#INCFLAGS) $?#INCFLAGS) -c $?#;' \
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-e s'#CFLAGS) estwise.c#CFLAGS) -c estwise.c#;' \
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-e s'#CFLAGS) estwiseb.c#CFLAGS) -c estwiseb.c#;' \
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-e s'#CFLAGS) estwisedb.c#CFLAGS) -c estwisedb.c#;' \
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-e s'#CFLAGS) genewise.c#CFLAGS) -c genewise.c#;' \
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-e s'#CFLAGS) genewisedb.c#CFLAGS) -c genewisedb.c#;' \
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${WRKSRC}/models/${MAKEFILE}
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do-install:
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.for file in ${BINFILES}
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@${INSTALL_PROGRAM} ${WRKSRC}/bin/${file} ${PREFIX}/bin
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.endfor
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@${MKDIR} ${DATADIR}
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.for file in ${DATAFILES}
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@${INSTALL_DATA} ${WRKTOP}/wisecfg/${file} ${DATADIR}
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.endfor
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.if !defined(NOPORTDOCS)
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@${MKDIR} ${DOCSDIR}
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.for file in ${DOCFILES}
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@${INSTALL_DATA} ${WRKTOP}/docs/${file} ${DOCSDIR}
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.endfor
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@${MKDIR} ${EXAMPLESDIR}
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.for file in ${EXFILES}
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@${INSTALL_DATA} ${WRKTOP}/test_data/${file} ${EXAMPLESDIR}
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.endfor
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.endif
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post-install:
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@${SED} -E -e 's#PREFIX#${PREFIX}#' -e '/(^\[|]$$)/d' ${PKGMESSAGE}
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.include <bsd.port.mk>
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