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18 lines
803 B
Plaintext
18 lines
803 B
Plaintext
GRAPPA: Genome Rearrangements Analysis under Parsimony and other
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Phylogenetic Algorithms
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This suite of programs implements the approach to phylogeny
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reconstruction from gene orders described in the paper
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Moret, B.M.E., Wyman, S., Bader, D.A., Warnow, T., and Yan, M.,
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``A detailed study of breakpoint analysis,''
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Proc. 6th Pacific Symp. Biocomputing PSB 2001, Hawaii (2001).
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In its current state, "grappa" allows one to explore either the
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space of all possible trees on n labelled leaves or the space of all
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such trees that obey (are refinements of) a particular constraint tree.
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"invdist" takes the first two genomes in the input file and returns
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their inversion distance.
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"distmat" prints the inversion and breakpoint distance matrices.
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WWW: http://www.cs.unm.edu/~moret/GRAPPA/
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