Alexey Dokuchaev ae2e4e1956 Update to version 1.13.1.		2014-03-07 07:39:20 +00:00
..
ariadne	Stage support	2013-11-12 21:54:36 +00:00
artemis	Support stage	2014-01-20 23:06:48 +00:00
avida	- Fix build with clang	2013-11-27 16:07:51 +00:00
babel	Support stage	2014-01-15 22:44:13 +00:00
biococoa
biojava	Remove trailing whitespaces from category biology	2014-02-21 13:35:26 +00:00
blast	Convert biology to MDOCS and MEXAMPLES	2014-01-03 15:46:52 +00:00
blat	- Update to 35	2014-02-27 11:46:11 +00:00
boinc-simap	Drop maintainership BOINC ports, old machine running them gave up.	2014-02-04 17:54:29 +00:00
chemeq	Stage support	2014-01-18 15:55:42 +00:00
clustalw	- Fix build with clang/libc++.	2013-12-20 15:29:07 +00:00
consed	Remove trailing whitespaces from category biology	2014-02-21 13:35:26 +00:00
crux	Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most cases	2014-02-16 17:15:31 +00:00
embassy	Reduce over inclusion of bsd.port.mk	2014-01-15 22:48:32 +00:00
emboss	In preparation for making libtool generate libraries with a sane name, fix all	2013-12-11 14:43:51 +00:00
fasta	Reduce over inclusion of bsd.port.mk	2014-01-15 22:50:18 +00:00
fasta3	biology/fasta3: Checked new distfile and regenerated distinfo to unbreak	2014-03-02 10:58:50 +00:00
fastdnaml	Support staging	2014-02-16 11:32:43 +00:00
finchtv	Remove trailing whitespaces from category biology	2014-02-21 13:35:26 +00:00
fluctuate	Support staging	2014-02-16 11:35:00 +00:00
garlic
genpak	Remove trailing whitespaces from category biology	2014-02-21 13:35:26 +00:00
gff2ps
gmap	Support stage	2013-12-10 17:21:46 +00:00
gperiodic	- Remove manual creation and removal of share/applications, as it's now in the mtree (categories starting with [bce])	2013-10-22 13:57:35 +00:00
grappa	- Respect CC/CFLAGS	2013-12-20 13:27:13 +00:00
hmmer	Stage support	2013-12-30 18:08:14 +00:00
iolib	Support stage	2014-01-20 17:02:11 +00:00
jalview	Fix properties on pkg-plist	2014-01-21 23:18:05 +00:00
lagan	- Fix build	2013-11-27 13:16:47 +00:00
lamarc	- rename AL2 to APACHE20 in Mk/bsd.licenses.db.mk	2013-12-30 20:55:18 +00:00
libgenome	biology/libgenome: Fix build on dragonfly	2014-02-05 23:47:48 +00:00
libsbml	Reduce over inclusion of bsd.port.mk	2014-01-15 22:50:50 +00:00
linux-foldingathome
mafft	Convert biology to MDOCS and MEXAMPLES	2014-01-03 15:46:52 +00:00
mapm3	- Fix build with clang	2014-01-12 19:07:28 +00:00
migrate	- Stagify; cleanup Makefile and reorder the knobs a bit	2014-01-29 12:08:29 +00:00
molden	- Update to 5.0.7	2014-02-27 08:58:36 +00:00
mopac	In preparation for making libtool generate libraries with a sane name, fix all	2013-12-11 14:43:51 +00:00
mrbayes	Support stage	2013-12-10 17:54:12 +00:00
mummer	Remove trailing whitespaces from category biology	2014-02-21 13:35:26 +00:00
muscle
ncbi-toolkit
njplot	Remove trailing whitespaces from category biology	2014-02-21 13:35:26 +00:00
ortep3	USES=fortran, fix LDFLAGS, staging.	2013-12-17 21:24:17 +00:00
p5-AcePerl	- Stage support	2014-02-10 06:56:52 +00:00
p5-Bio-ASN1-EntrezGene	- add stage support	2014-01-06 09:57:19 +00:00
p5-Bio-Das	- support stage	2014-01-05 12:07:20 +00:00
p5-Bio-Das-Lite	- fix pkg-plist	2014-01-30 07:34:25 +00:00
p5-Bio-GFF3	- Update to 1.9	2014-01-23 03:28:37 +00:00
p5-Bio-Glite	- support stage	2014-01-05 12:07:20 +00:00
p5-Bio-Graphics
p5-Bio-MAGETAB	- Update to 1.28	2013-11-28 15:05:08 +00:00
p5-Bio-NEXUS	- Stage support	2014-01-31 12:47:06 +00:00
p5-Bio-Phylo	- support stage	2014-01-05 12:07:20 +00:00
p5-Bio-SCF	- add stage support	2014-01-06 09:44:19 +00:00
p5-bioperl	Remove trailing whitespaces from category biology	2014-02-21 13:35:26 +00:00
p5-bioperl-run	Remove trailing whitespaces from category biology	2014-02-21 13:35:26 +00:00
paml	Remove trailing whitespaces from category biology	2014-02-21 13:35:26 +00:00
phd2fasta	Convert biology to MDOCS and MEXAMPLES	2014-01-03 15:46:52 +00:00
phrap	Convert biology to MDOCS and MEXAMPLES	2014-01-03 15:46:52 +00:00
phred	Convert biology to MDOCS and MEXAMPLES	2014-01-03 15:46:52 +00:00
phylip
phyml	- Stage support	2014-01-31 12:32:55 +00:00
platon	Version 2013.12.12, USES=fortran, staging.	2013-12-17 21:55:24 +00:00
plink	Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most cases	2014-02-16 17:15:31 +00:00
plinkseq	- Stage support	2014-01-31 12:33:11 +00:00
povchem	Convert to USES=dos2unix	2013-11-18 13:45:44 +00:00
primer3
protomol	Reduce over inclusion of bsd.port.mk	2014-01-15 22:51:26 +00:00
psi88	USES=fortran, staging, miscellaneous cleanups.	2013-12-18 16:23:08 +00:00
py-biopython	- Repocopy print/py-reportlab to print/py-reportlab1	2014-02-25 12:44:10 +00:00
pycogent	Update to libmpc version 1.0.1 which brings the following fixes:	2013-10-26 00:52:33 +00:00
pyfasta	- Convert to PYDISTUTILS_AUTOPLIST	2014-01-31 12:31:24 +00:00
pymol	In preparation for making libtool generate libraries with a sane name, fix all	2013-12-11 14:43:51 +00:00
python-nexus	- Convert to PYDISTUTILS_AUTOPLIST	2014-01-31 12:30:39 +00:00
rasmol
recombine	- Support staging	2014-02-16 11:39:42 +00:00
ruby-bio	Reduce over inclusion of bsd.port.mk	2014-01-15 22:52:28 +00:00
seaview	- Stage support	2014-02-27 08:46:42 +00:00
seqan	Update to libmpc version 1.0.1 which brings the following fixes:	2013-10-26 00:52:33 +00:00
seqio	Support staging	2014-02-16 11:42:09 +00:00
seqtools	Fix old makeplist bug.	2014-02-12 14:03:25 +00:00
sim4	Support staging	2014-02-16 11:43:07 +00:00
ssaha	Deprecate ports unmaintained for which distillator is not able to find public distfiles	2014-02-07 18:50:30 +00:00
t_coffee	USES=fortran, staging.	2013-12-18 17:24:51 +00:00
tinker	- biology/tinker: USES=fortran, staging.	2013-12-18 18:27:04 +00:00
treepuzzle
treeviewx	Stage support	2013-12-30 18:27:32 +00:00
tRNAscan-SE	biology/tRNAscan-SE: Fix hardcoded perl path	2014-02-05 23:44:50 +00:00
ugene	Update to version 1.13.1.	2014-03-07 07:39:20 +00:00
velvet	Remove trailing whitespaces from category biology	2014-02-21 13:35:26 +00:00
wise	biology/wise: Add dragonfly support	2014-02-05 23:42:06 +00:00
xmolwt
Makefile	biology/seqtools: Tools for visualising sequence alignments	2013-11-10 11:01:02 +00:00