mirror of
https://git.FreeBSD.org/ports.git
synced 2024-12-14 03:10:47 +00:00
392 lines
19 KiB
Plaintext
392 lines
19 KiB
Plaintext
bin/bioruby
|
|
bin/br_biofetch
|
|
bin/br_bioflat
|
|
bin/br_biogetseq
|
|
bin/br_pmfetch
|
|
etc/bioinformatics/seqdatabase.ini.sample
|
|
etc/bioinformatics/seqdatabase.ini
|
|
%%RUBY_SITELIBDIR%%/bio/alignment.rb
|
|
%%RUBY_SITELIBDIR%%/bio/command.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db.rb
|
|
%%RUBY_SITELIBDIR%%/bio/feature.rb
|
|
%%RUBY_SITELIBDIR%%/bio/location.rb
|
|
%%RUBY_SITELIBDIR%%/bio/map.rb
|
|
%%RUBY_SITELIBDIR%%/bio/pathway.rb
|
|
%%RUBY_SITELIBDIR%%/bio/reference.rb
|
|
%%RUBY_SITELIBDIR%%/bio/sequence.rb
|
|
%%RUBY_SITELIBDIR%%/bio/shell.rb
|
|
%%RUBY_SITELIBDIR%%/bio/tree.rb
|
|
%%RUBY_SITELIBDIR%%/bio/version.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/blast.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/clustalw.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/emboss.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/fasta.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/hmmer.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/mafft.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/muscle.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/probcons.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/psort.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/pts1.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/sim4.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/tcoffee.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/bl2seq/report.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/blast/ddbj.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/blast/format0.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/blast/format8.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/blast/genomenet.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/blast/ncbioptions.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/blast/remote.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/blast/report.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/blast/rexml.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/blast/rpsblast.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/blast/wublast.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/blast/xmlparser.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/blat/report.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/clustalw/report.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/fasta/format10.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/gcg/msf.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/gcg/seq.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/genscan/report.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/hmmer/report.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/iprscan/report.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/mafft/report.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/meme/mast.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/meme/motif.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/meme/mast/report.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/paml/baseml.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/paml/codeml.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/paml/common.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/paml/common_report.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/paml/yn00.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/paml/baseml/report.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/paml/codeml/rates.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/paml/codeml/report.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/paml/yn00/report.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/phylip/alignment.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/phylip/distance_matrix.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/psort/report.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/sim4/report.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/sosui/report.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/spidey/report.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/targetp/report.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/tmhmm/report.rb
|
|
%%RUBY_SITELIBDIR%%/bio/compat/features.rb
|
|
%%RUBY_SITELIBDIR%%/bio/compat/references.rb
|
|
%%RUBY_SITELIBDIR%%/bio/data/aa.rb
|
|
%%RUBY_SITELIBDIR%%/bio/data/codontable.rb
|
|
%%RUBY_SITELIBDIR%%/bio/data/na.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/aaindex.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/fantom.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/fasta.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/fastq.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/gff.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/go.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/lasergene.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/litdb.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/medline.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/nbrf.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/newick.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/nexus.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/pdb.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/prosite.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/rebase.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/soft.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/transfac.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/biosql/biosql_to_biosequence.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/biosql/sequence.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/embl/common.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/embl/embl.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/embl/embl_to_biosequence.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/embl/format_embl.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/embl/sptr.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/embl/swissprot.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/embl/trembl.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/embl/uniprot.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/fasta/defline.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/fasta/fasta_to_biosequence.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/fasta/format_fasta.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/fasta/format_qual.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/fasta/qual.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/fastq/fastq_to_biosequence.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/fastq/format_fastq.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/genbank/common.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/genbank/ddbj.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/genbank/format_genbank.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/genbank/genbank.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/genbank/genbank_to_biosequence.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/genbank/genpept.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/genbank/refseq.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/kegg/brite.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/kegg/common.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/kegg/compound.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/kegg/drug.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/kegg/enzyme.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/kegg/expression.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/kegg/genes.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/kegg/genome.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/kegg/glycan.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/kegg/keggtab.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/kegg/kgml.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/kegg/orthology.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/kegg/reaction.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/kegg/taxonomy.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/pdb/atom.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/pdb/chain.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/pdb/chemicalcomponent.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/pdb/model.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/pdb/pdb.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/pdb/residue.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/pdb/utils.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/phyloxml/phyloxml.xsd
|
|
%%RUBY_SITELIBDIR%%/bio/db/phyloxml/phyloxml_elements.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/phyloxml/phyloxml_parser.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/phyloxml/phyloxml_writer.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/sanger_chromatogram/abif.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/sanger_chromatogram/chromatogram.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/sanger_chromatogram/chromatogram_to_biosequence.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/sanger_chromatogram/scf.rb
|
|
%%RUBY_SITELIBDIR%%/bio/io/das.rb
|
|
%%RUBY_SITELIBDIR%%/bio/io/dbget.rb
|
|
%%RUBY_SITELIBDIR%%/bio/io/ddbjxml.rb
|
|
%%RUBY_SITELIBDIR%%/bio/io/ebisoap.rb
|
|
%%RUBY_SITELIBDIR%%/bio/io/ensembl.rb
|
|
%%RUBY_SITELIBDIR%%/bio/io/fastacmd.rb
|
|
%%RUBY_SITELIBDIR%%/bio/io/fetch.rb
|
|
%%RUBY_SITELIBDIR%%/bio/io/flatfile.rb
|
|
%%RUBY_SITELIBDIR%%/bio/io/higet.rb
|
|
%%RUBY_SITELIBDIR%%/bio/io/hinv.rb
|
|
%%RUBY_SITELIBDIR%%/bio/io/keggapi.rb
|
|
%%RUBY_SITELIBDIR%%/bio/io/ncbirest.rb
|
|
%%RUBY_SITELIBDIR%%/bio/io/ncbisoap.rb
|
|
%%RUBY_SITELIBDIR%%/bio/io/pubmed.rb
|
|
%%RUBY_SITELIBDIR%%/bio/io/registry.rb
|
|
%%RUBY_SITELIBDIR%%/bio/io/soapwsdl.rb
|
|
%%RUBY_SITELIBDIR%%/bio/io/sql.rb
|
|
%%RUBY_SITELIBDIR%%/bio/io/togows.rb
|
|
%%RUBY_SITELIBDIR%%/bio/io/biosql/ar-biosql.rb
|
|
%%RUBY_SITELIBDIR%%/bio/io/biosql/biosql.rb
|
|
%%RUBY_SITELIBDIR%%/bio/io/biosql/config/database.yml
|
|
%%RUBY_SITELIBDIR%%/bio/io/flatfile/autodetection.rb
|
|
%%RUBY_SITELIBDIR%%/bio/io/flatfile/bdb.rb
|
|
%%RUBY_SITELIBDIR%%/bio/io/flatfile/buffer.rb
|
|
%%RUBY_SITELIBDIR%%/bio/io/flatfile/index.rb
|
|
%%RUBY_SITELIBDIR%%/bio/io/flatfile/indexer.rb
|
|
%%RUBY_SITELIBDIR%%/bio/io/flatfile/splitter.rb
|
|
%%RUBY_SITELIBDIR%%/bio/sequence/aa.rb
|
|
%%RUBY_SITELIBDIR%%/bio/sequence/adapter.rb
|
|
%%RUBY_SITELIBDIR%%/bio/sequence/common.rb
|
|
%%RUBY_SITELIBDIR%%/bio/sequence/compat.rb
|
|
%%RUBY_SITELIBDIR%%/bio/sequence/dblink.rb
|
|
%%RUBY_SITELIBDIR%%/bio/sequence/format.rb
|
|
%%RUBY_SITELIBDIR%%/bio/sequence/format_raw.rb
|
|
%%RUBY_SITELIBDIR%%/bio/sequence/generic.rb
|
|
%%RUBY_SITELIBDIR%%/bio/sequence/na.rb
|
|
%%RUBY_SITELIBDIR%%/bio/sequence/quality_score.rb
|
|
%%RUBY_SITELIBDIR%%/bio/shell/core.rb
|
|
%%RUBY_SITELIBDIR%%/bio/shell/demo.rb
|
|
%%RUBY_SITELIBDIR%%/bio/shell/interface.rb
|
|
%%RUBY_SITELIBDIR%%/bio/shell/irb.rb
|
|
%%RUBY_SITELIBDIR%%/bio/shell/object.rb
|
|
%%RUBY_SITELIBDIR%%/bio/shell/script.rb
|
|
%%RUBY_SITELIBDIR%%/bio/shell/setup.rb
|
|
%%RUBY_SITELIBDIR%%/bio/shell/web.rb
|
|
%%RUBY_SITELIBDIR%%/bio/shell/plugin/blast.rb
|
|
%%RUBY_SITELIBDIR%%/bio/shell/plugin/codon.rb
|
|
%%RUBY_SITELIBDIR%%/bio/shell/plugin/das.rb
|
|
%%RUBY_SITELIBDIR%%/bio/shell/plugin/emboss.rb
|
|
%%RUBY_SITELIBDIR%%/bio/shell/plugin/entry.rb
|
|
%%RUBY_SITELIBDIR%%/bio/shell/plugin/flatfile.rb
|
|
%%RUBY_SITELIBDIR%%/bio/shell/plugin/keggapi.rb
|
|
%%RUBY_SITELIBDIR%%/bio/shell/plugin/midi.rb
|
|
%%RUBY_SITELIBDIR%%/bio/shell/plugin/ncbirest.rb
|
|
%%RUBY_SITELIBDIR%%/bio/shell/plugin/obda.rb
|
|
%%RUBY_SITELIBDIR%%/bio/shell/plugin/psort.rb
|
|
%%RUBY_SITELIBDIR%%/bio/shell/plugin/seq.rb
|
|
%%RUBY_SITELIBDIR%%/bio/shell/plugin/soap.rb
|
|
%%RUBY_SITELIBDIR%%/bio/shell/plugin/togows.rb
|
|
%%RUBY_SITELIBDIR%%/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/bioruby_generator.rb
|
|
%%RUBY_SITELIBDIR%%/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/_classes.rhtml
|
|
%%RUBY_SITELIBDIR%%/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/_log.rhtml
|
|
%%RUBY_SITELIBDIR%%/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/_methods.rhtml
|
|
%%RUBY_SITELIBDIR%%/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/_modules.rhtml
|
|
%%RUBY_SITELIBDIR%%/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/_variables.rhtml
|
|
%%RUBY_SITELIBDIR%%/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby-bg.gif
|
|
%%RUBY_SITELIBDIR%%/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby-gem.png
|
|
%%RUBY_SITELIBDIR%%/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby-link.gif
|
|
%%RUBY_SITELIBDIR%%/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby.css
|
|
%%RUBY_SITELIBDIR%%/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby.rhtml
|
|
%%RUBY_SITELIBDIR%%/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby_controller.rb
|
|
%%RUBY_SITELIBDIR%%/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby_helper.rb
|
|
%%RUBY_SITELIBDIR%%/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/commands.rhtml
|
|
%%RUBY_SITELIBDIR%%/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/history.rhtml
|
|
%%RUBY_SITELIBDIR%%/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/index.rhtml
|
|
%%RUBY_SITELIBDIR%%/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/spinner.gif
|
|
%%RUBY_SITELIBDIR%%/bio/util/color_scheme.rb
|
|
%%RUBY_SITELIBDIR%%/bio/util/contingency_table.rb
|
|
%%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme.rb
|
|
%%RUBY_SITELIBDIR%%/bio/util/sirna.rb
|
|
%%RUBY_SITELIBDIR%%/bio/util/color_scheme/buried.rb
|
|
%%RUBY_SITELIBDIR%%/bio/util/color_scheme/helix.rb
|
|
%%RUBY_SITELIBDIR%%/bio/util/color_scheme/hydropathy.rb
|
|
%%RUBY_SITELIBDIR%%/bio/util/color_scheme/nucleotide.rb
|
|
%%RUBY_SITELIBDIR%%/bio/util/color_scheme/strand.rb
|
|
%%RUBY_SITELIBDIR%%/bio/util/color_scheme/taylor.rb
|
|
%%RUBY_SITELIBDIR%%/bio/util/color_scheme/turn.rb
|
|
%%RUBY_SITELIBDIR%%/bio/util/color_scheme/zappo.rb
|
|
%%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/analysis.rb
|
|
%%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/analysis_basic.rb
|
|
%%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/cut_symbol.rb
|
|
%%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/double_stranded.rb
|
|
%%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/enzymes.yaml
|
|
%%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/single_strand.rb
|
|
%%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/single_strand_complement.rb
|
|
%%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/string_formatting.rb
|
|
%%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/double_stranded/aligned_strands.rb
|
|
%%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/double_stranded/cut_location_pair.rb
|
|
%%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/double_stranded/cut_location_pair_in_enzyme_notation.rb
|
|
%%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/double_stranded/cut_locations.rb
|
|
%%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/double_stranded/cut_locations_in_enzyme_notation.rb
|
|
%%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/range/cut_range.rb
|
|
%%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/range/cut_ranges.rb
|
|
%%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/range/horizontal_cut_range.rb
|
|
%%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/range/sequence_range.rb
|
|
%%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/range/vertical_cut_range.rb
|
|
%%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/range/sequence_range/calculated_cuts.rb
|
|
%%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/range/sequence_range/fragment.rb
|
|
%%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/range/sequence_range/fragments.rb
|
|
%%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/single_strand/cut_locations_in_enzyme_notation.rb
|
|
%%RUBY_SITELIBDIR%%/bio.rb
|
|
%%PORTDOCS%%%%RUBY_MODDOCDIR%%/ja/KEGG_API.rd.ja
|
|
%%PORTDOCS%%%%RUBY_MODDOCDIR%%/ja/Tutorial.rd.ja
|
|
%%PORTDOCS%%%%RUBY_MODDOCDIR%%/ChangeLog
|
|
%%PORTDOCS%%%%RUBY_MODDOCDIR%%/README.rdoc
|
|
%%PORTDOCS%%%%RUBY_MODDOCDIR%%/Changes-0.7.rd
|
|
%%PORTDOCS%%%%RUBY_MODDOCDIR%%/KEGG_API.rd
|
|
%%PORTDOCS%%%%RUBY_MODDOCDIR%%/Tutorial.rd
|
|
%%PORTEXAMPLES%%%%RUBY_MODEXAMPLESDIR%%/vs-genes.rb
|
|
%%PORTEXAMPLES%%%%RUBY_MODEXAMPLESDIR%%/biofetch.rb
|
|
%%PORTEXAMPLES%%%%RUBY_MODEXAMPLESDIR%%/color_scheme_na.rb
|
|
%%PORTEXAMPLES%%%%RUBY_MODEXAMPLESDIR%%/demo_aaindex.rb
|
|
%%PORTEXAMPLES%%%%RUBY_MODEXAMPLESDIR%%/dbget
|
|
%%PORTEXAMPLES%%%%RUBY_MODEXAMPLESDIR%%/demo_aminoacid.rb
|
|
%%PORTEXAMPLES%%%%RUBY_MODEXAMPLESDIR%%/demo_bl2seq_report.rb
|
|
%%PORTEXAMPLES%%%%RUBY_MODEXAMPLESDIR%%/demo_blast_report.rb
|
|
%%PORTEXAMPLES%%%%RUBY_MODEXAMPLESDIR%%/demo_codontable.rb
|
|
%%PORTEXAMPLES%%%%RUBY_MODEXAMPLESDIR%%/demo_das.rb
|
|
%%PORTEXAMPLES%%%%RUBY_MODEXAMPLESDIR%%/demo_ddbjxml.rb
|
|
%%PORTEXAMPLES%%%%RUBY_MODEXAMPLESDIR%%/demo_fasta_remote.rb
|
|
%%PORTEXAMPLES%%%%RUBY_MODEXAMPLESDIR%%/demo_fastaformat.rb
|
|
%%PORTEXAMPLES%%%%RUBY_MODEXAMPLESDIR%%/demo_genbank.rb
|
|
%%PORTEXAMPLES%%%%RUBY_MODEXAMPLESDIR%%/demo_genscan_report.rb
|
|
%%PORTEXAMPLES%%%%RUBY_MODEXAMPLESDIR%%/demo_gff1.rb
|
|
%%PORTEXAMPLES%%%%RUBY_MODEXAMPLESDIR%%/demo_go.rb
|
|
%%PORTEXAMPLES%%%%RUBY_MODEXAMPLESDIR%%/demo_hmmer_report.rb
|
|
%%PORTEXAMPLES%%%%RUBY_MODEXAMPLESDIR%%/enzymes.rb
|
|
%%PORTEXAMPLES%%%%RUBY_MODEXAMPLESDIR%%/demo_kegg_compound.rb
|
|
%%PORTEXAMPLES%%%%RUBY_MODEXAMPLESDIR%%/demo_kegg_drug.rb
|
|
%%PORTEXAMPLES%%%%RUBY_MODEXAMPLESDIR%%/demo_kegg_genome.rb
|
|
%%PORTEXAMPLES%%%%RUBY_MODEXAMPLESDIR%%/demo_kegg_glycan.rb
|
|
%%PORTEXAMPLES%%%%RUBY_MODEXAMPLESDIR%%/demo_kegg_orthology.rb
|
|
%%PORTEXAMPLES%%%%RUBY_MODEXAMPLESDIR%%/demo_kegg_reaction.rb
|
|
%%PORTEXAMPLES%%%%RUBY_MODEXAMPLESDIR%%/demo_kegg_taxonomy.rb
|
|
%%PORTEXAMPLES%%%%RUBY_MODEXAMPLESDIR%%/demo_keggapi.rb
|
|
%%PORTEXAMPLES%%%%RUBY_MODEXAMPLESDIR%%/demo_litdb.rb
|
|
%%PORTEXAMPLES%%%%RUBY_MODEXAMPLESDIR%%/demo_locations.rb
|
|
%%PORTEXAMPLES%%%%RUBY_MODEXAMPLESDIR%%/demo_ncbi_rest.rb
|
|
%%PORTEXAMPLES%%%%RUBY_MODEXAMPLESDIR%%/demo_nucleicacid.rb
|
|
%%PORTEXAMPLES%%%%RUBY_MODEXAMPLESDIR%%/demo_pathway.rb
|
|
%%PORTEXAMPLES%%%%RUBY_MODEXAMPLESDIR%%/demo_prosite.rb
|
|
%%PORTEXAMPLES%%%%RUBY_MODEXAMPLESDIR%%/demo_psort.rb
|
|
%%PORTEXAMPLES%%%%RUBY_MODEXAMPLESDIR%%/demo_psort_report.rb
|
|
%%PORTEXAMPLES%%%%RUBY_MODEXAMPLESDIR%%/demo_pubmed.rb
|
|
%%PORTEXAMPLES%%%%RUBY_MODEXAMPLESDIR%%/demo_sequence.rb
|
|
%%PORTEXAMPLES%%%%RUBY_MODEXAMPLESDIR%%/demo_sirna.rb
|
|
%%PORTEXAMPLES%%%%RUBY_MODEXAMPLESDIR%%/demo_sosui_report.rb
|
|
%%PORTEXAMPLES%%%%RUBY_MODEXAMPLESDIR%%/demo_targetp_report.rb
|
|
%%PORTEXAMPLES%%%%RUBY_MODEXAMPLESDIR%%/demo_tmhmm_report.rb
|
|
%%PORTEXAMPLES%%%%RUBY_MODEXAMPLESDIR%%/fasta2tab.rb
|
|
%%PORTEXAMPLES%%%%RUBY_MODEXAMPLESDIR%%/fastagrep.rb
|
|
%%PORTEXAMPLES%%%%RUBY_MODEXAMPLESDIR%%/fastasort.rb
|
|
%%PORTEXAMPLES%%%%RUBY_MODEXAMPLESDIR%%/fsplit.rb
|
|
%%PORTEXAMPLES%%%%RUBY_MODEXAMPLESDIR%%/gb2fasta.rb
|
|
%%PORTEXAMPLES%%%%RUBY_MODEXAMPLESDIR%%/gb2tab.rb
|
|
%%PORTEXAMPLES%%%%RUBY_MODEXAMPLESDIR%%/gbtab2mysql.rb
|
|
%%PORTEXAMPLES%%%%RUBY_MODEXAMPLESDIR%%/genes2nuc.rb
|
|
%%PORTEXAMPLES%%%%RUBY_MODEXAMPLESDIR%%/genes2pep.rb
|
|
%%PORTEXAMPLES%%%%RUBY_MODEXAMPLESDIR%%/genes2tab.rb
|
|
%%PORTEXAMPLES%%%%RUBY_MODEXAMPLESDIR%%/genome2rb.rb
|
|
%%PORTEXAMPLES%%%%RUBY_MODEXAMPLESDIR%%/genome2tab.rb
|
|
%%PORTEXAMPLES%%%%RUBY_MODEXAMPLESDIR%%/goslim.rb
|
|
%%PORTEXAMPLES%%%%RUBY_MODEXAMPLESDIR%%/gt2fasta.rb
|
|
%%PORTEXAMPLES%%%%RUBY_MODEXAMPLESDIR%%/na2aa.rb
|
|
%%PORTEXAMPLES%%%%RUBY_MODEXAMPLESDIR%%/pmfetch.rb
|
|
%%PORTEXAMPLES%%%%RUBY_MODEXAMPLESDIR%%/pmsearch.rb
|
|
%%PORTEXAMPLES%%%%RUBY_MODEXAMPLESDIR%%/psortplot_html.rb
|
|
%%PORTEXAMPLES%%%%RUBY_MODEXAMPLESDIR%%/ssearch2tab.rb
|
|
%%PORTEXAMPLES%%%%RUBY_MODEXAMPLESDIR%%/tdiary.rb
|
|
%%PORTEXAMPLES%%%%RUBY_MODEXAMPLESDIR%%/test_phyloxml_big.rb
|
|
%%PORTEXAMPLES%%%%RUBY_MODEXAMPLESDIR%%/tfastx2tab.rb
|
|
%%PORTEXAMPLES%%%%RUBY_MODEXAMPLESDIR%%/any2fasta.rb
|
|
@dirrm etc/bioinformatics
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/single_strand
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/range/sequence_range
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/range
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/double_stranded
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/util/color_scheme
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/util
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/shell/rails/vendor/plugins/bioruby/generators
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/shell/rails/vendor/plugins/bioruby
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/shell/rails/vendor/plugins
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/shell/rails/vendor
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/shell/rails
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/shell/plugin
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/shell
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/sequence
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/io/flatfile
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/io/biosql/config
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/io/biosql
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/io
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/db/sanger_chromatogram
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/db/phyloxml
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/db/pdb
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/db/kegg
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/db/genbank
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/db/fastq
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/db/fasta
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/db/embl
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/db/biosql
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/db
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/data
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/compat
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/appl/tmhmm
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/appl/targetp
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/appl/spidey
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/appl/sosui
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/appl/sim4
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/appl/psort
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/appl/phylip
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/appl/paml/yn00
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/appl/paml/codeml
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/appl/paml/baseml
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/appl/paml
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/appl/meme/mast
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/appl/meme
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/appl/mafft
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/appl/iprscan
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/appl/hmmer
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/appl/genscan
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/appl/gcg
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/appl/fasta
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/appl/clustalw
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/appl/blat
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/appl/blast
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/appl/bl2seq
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/appl
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio
|
|
%%PORTDOCS%%@dirrm %%RUBY_MODDOCDIR%%/ja
|
|
%%PORTDOCS%%@dirrm %%RUBY_MODDOCDIR%%
|
|
%%PORTEXAMPLES%%@dirrm %%RUBY_MODEXAMPLESDIR%%
|