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mirror of https://git.FreeBSD.org/ports.git synced 2024-12-11 02:50:24 +00:00
freebsd-ports/biology
Wen Heping d591093880 - Update to 1.9 [1]
- Moved to github [1]
- Depend on newer sqlalchemy10 [1]
- Update pkg-descr and WWW [1]
- Limit python to -2.7 [2]
- Reset maintainer to python@ for better maintain

PR:		211621
Submitted by:	pi@ [1], koobs@ [2]
2016-08-08 11:21:04 +00:00
..
ariadne Cleanup $() variables in ports Makefiles. 2016-07-20 15:33:20 +00:00
artemis
avida
babel
bcftools biology/{htslib|samtools|bcftools}: 1.3 -> 1.3.1 2016-05-26 20:28:55 +00:00
bedtools
biococoa
biojava When there is a do-install target, do not use a post-install target, do 2016-07-19 11:04:13 +00:00
blat - Fix trailing whitespace in pkg-messages 2016-05-19 11:09:14 +00:00
bowtie
bowtie2 biology/bowtie2: 2.2.7 -> 2.2.8 2016-05-13 20:12:44 +00:00
bwa
cd-hit
cdbfasta
chemeq
clustalw Remove useless WRKSRC definitions. 2016-05-25 15:43:34 +00:00
consed
crux
diamond Update to version 0.8.17 2016-08-05 21:24:06 +00:00
emboss - update libgd to 2.2.2 2016-07-20 09:33:31 +00:00
fasta
fasta3 - Fix trailing whitespace in pkg-messages 2016-05-19 11:09:14 +00:00
fastdnaml
fastool
fasttree
fastx-toolkit
fluctuate
garlic
gff2ps
gmap
gperiodic - LICENSE 2016-07-02 09:05:22 +00:00
grappa - Fix trailing whitespace in pkg-descrs, categories [a-f]* 2016-05-19 10:21:23 +00:00
hmmer
htslib biology/{htslib|samtools|bcftools}: 1.3 -> 1.3.1 2016-05-26 20:28:55 +00:00
iolib
jalview - Fix trailing whitespace in pkg-descrs, categories [a-f]* 2016-05-19 10:21:23 +00:00
jellyfish
lagan - Fix trailing whitespace in pkg-messages 2016-05-19 11:09:14 +00:00
lamarc
libgtextutils
libsbml
linux-foldingathome
mafft - Fix trailing whitespace in pkg-descrs, categories [a-f]* 2016-05-19 10:21:23 +00:00
mapm3 - Fix trailing whitespace in pkg-descrs, categories [a-f]* 2016-05-19 10:21:23 +00:00
migrate
molden - Fix trailing whitespace in pkg-descrs, categories [a-f]* 2016-05-19 10:21:23 +00:00
mopac
mrbayes
mummer
muscle
ncbi-blast+
ncbi-toolkit - Add missing dependency, fixing build 2016-06-24 09:04:45 +00:00
p5-AcePerl
p5-Bio-ASN1-EntrezGene - Fix trailing whitespace in pkg-descrs, categories [a-f]* 2016-05-19 10:21:23 +00:00
p5-Bio-Das
p5-Bio-Das-Lite
p5-Bio-GFF3
p5-Bio-Glite
p5-Bio-Graphics
p5-Bio-MAGETAB
p5-Bio-NEXUS - Fix trailing whitespace in pkg-descrs, categories [a-f]* 2016-05-19 10:21:23 +00:00
p5-Bio-Phylo - Fix trailing whitespace in pkg-descrs, categories [a-f]* 2016-05-19 10:21:23 +00:00
p5-Bio-SCF
p5-bioperl - Fix trailing whitespace in pkg-descrs, categories [a-f]* 2016-05-19 10:21:23 +00:00
p5-bioperl-run
p5-transdecoder
paml - Fix trailing whitespace in pkg-descrs, categories [a-f]* 2016-05-19 10:21:23 +00:00
phrap
phred
phylip
phyml
plink
plinkseq
primer3
protomol
psi88 - Fix trailing whitespace in pkg-descrs, categories [a-f]* 2016-05-19 10:21:23 +00:00
py-biom-format - Fix run-time dependency issues 2016-06-11 09:25:04 +00:00
py-biopython
pycogent - Update to 1.9 [1] 2016-08-08 11:21:04 +00:00
pyfasta - Fix trailing whitespace in pkg-descrs, categories [a-f]* 2016-05-19 10:21:23 +00:00
python-nexus - Update to 1.35 2016-06-08 07:39:05 +00:00
recombine When there is a do-install target, do not use a post-install target, do 2016-07-19 11:04:13 +00:00
ruby-bio
samtools biology/{htslib|samtools|bcftools}: 1.3 -> 1.3.1 2016-05-26 20:28:55 +00:00
seaview biology/seaview: Update version 4.5.4.8=>4.6 2016-06-10 11:06:42 +00:00
seqan - Do install cmake and pkgconfig modules 2016-05-27 16:10:36 +00:00
seqan1 When there is a do-install target, do not use a post-install target, do 2016-07-19 11:04:13 +00:00
seqan-apps - Fix trailing whitespace in pkg-descrs, categories [a-f]* 2016-05-19 10:21:23 +00:00
seqio
seqtools biology/seqtools: 4.42.1 -> 4.43.0 2016-07-31 14:19:09 +00:00
sim4
slclust Remove unneeded usage of: 2016-06-06 15:25:42 +00:00
ssaha - Fix trailing whitespace in pkg-descrs, categories [a-f]* 2016-05-19 10:21:23 +00:00
t_coffee
tinker
treepuzzle
treeviewx
trimmomatic
tRNAscan-SE Prevent collision with getline(3) 2016-05-13 18:38:34 +00:00
ugene
vcftools
velvet
wise - Switch to options helpers 2016-06-21 09:05:06 +00:00
xmolwt - Fix trailing whitespace in pkg-descrs, categories [a-f]* 2016-05-19 10:21:23 +00:00
Makefile Remove expired ports without open PRs: 2016-07-04 20:48:23 +00:00