mirror of
https://git.FreeBSD.org/ports.git
synced 2024-12-13 03:03:15 +00:00
e59c88cece
(via Mk/bsd.default-versions.mk and lang/gcc) which has moved from GCC 5.4 to GCC 6.4 under most circumstances. This includes ports - with USE_GCC=yes or USE_GCC=any, - with USES=fortran, - using Mk/bsd.octave.mk which in turn features USES=fortran, and - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++11-lang, c++14-lang, c++0x, c11, or gcc-c++11-lib. PR: 219275
41 lines
1.0 KiB
Makefile
41 lines
1.0 KiB
Makefile
# Created by: Fernan Aguero <fernan@iib.unsam.edu.ar>
|
|
# $FreeBSD$
|
|
|
|
PORTNAME= ssaha
|
|
PORTVERSION= 3.1c
|
|
PORTREVISION= 5
|
|
CATEGORIES= biology
|
|
MASTER_SITES= ftp://ftp.sanger.ac.uk/pub4/resources/software/ssaha/
|
|
DISTNAME= ${PORTNAME}_v${PORTVERSION:S/.//}
|
|
|
|
MAINTAINER= ports@FreeBSD.org
|
|
COMMENT= Very fast matching and alignment of DNA sequences
|
|
|
|
NO_WRKSUBDIR= yes
|
|
BUILD_WRKSRC= ${WRKSRC}/Binary
|
|
|
|
USES= gmake
|
|
USE_GCC= any
|
|
MAKE_ENV= CCC="${CXX}" OPTIM="${CXXFLAGS}" THREAD_LIB="-pthread"
|
|
MAKEFILE= makefile
|
|
ALL_TARGET= ssaha
|
|
|
|
PLIST_FILES= bin/ssaha %%DATADIR%%/testSSAHA.csh \
|
|
${DATA_FILES:S,^,%%DATADIR%%/,}
|
|
|
|
DATA_FILES= test.fasta test_extract.fasta test_filter.fail \
|
|
test_filter.fastq test_protein.fasta README
|
|
|
|
do-install:
|
|
(cd ${BUILD_WRKSRC} && ${INSTALL_PROGRAM} ssaha \
|
|
${STAGEDIR}${PREFIX}/bin)
|
|
@${MKDIR} ${STAGEDIR}${DATADIR}
|
|
(cd ${BUILD_WRKSRC} && ${INSTALL_SCRIPT} testSSAHA.csh \
|
|
${STAGEDIR}${DATADIR})
|
|
.for i in ${DATA_FILES}
|
|
(cd ${BUILD_WRKSRC} && ${INSTALL_DATA} ${i} \
|
|
${STAGEDIR}${DATADIR})
|
|
.endfor
|
|
|
|
.include <bsd.port.mk>
|