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mirror of https://git.FreeBSD.org/ports.git synced 2024-12-11 02:50:24 +00:00
freebsd-ports/biology
Mathieu Arnold c6457ffef4 Update ports in the [bcd]* categories to not use GH_COMMIT.
With minor cleanups to make things simpler.

With hat:	portmgr
Sponsored by:	Absolight
2015-05-06 15:16:53 +00:00
..
ariadne 6 ports categories: Remove $PTHREAD_LIBS 2015-03-24 16:01:21 +00:00
artemis - Add empty directory to plist 2015-03-11 14:41:53 +00:00
avida
babel
biococoa Convert bsd.gnustep.mk to USES=gnustep 2015-04-09 07:44:41 +00:00
biojava
blat
chemeq
clustalw
consed ${ENV} does not exist, it is called ${SETENV}. 2015-04-13 14:49:37 +00:00
crux
emboss Fix packaging as a user (pkg already takes care of credentials) 2015-03-18 21:52:19 +00:00
fasta
fasta3
fastdnaml
fluctuate
garlic
gff2ps
gmap
gperiodic
grappa
hmmer - Remove deprecated option 2015-04-02 15:41:31 +00:00
htslib Update ports in the [bcd]* categories to not use GH_COMMIT. 2015-05-06 15:16:53 +00:00
iolib - Update to 1.13.10 2015-03-04 13:17:46 +00:00
jalview
lagan
lamarc
libsbml
linux-foldingathome
mafft 6 ports categories: Remove $PTHREAD_LIBS 2015-03-24 16:01:21 +00:00
mapm3
migrate Mark as broken unfetchable ports 2015-04-05 17:55:35 +00:00
molden
mopac
mrbayes
mummer
muscle
ncbi-blast+ - Unbreak 2015-05-04 06:08:59 +00:00
ncbi-toolkit
njplot Mark as broken unfetchable ports 2015-04-05 17:55:35 +00:00
ortep3 Mark as broken unfetchable ports 2015-04-05 17:55:35 +00:00
p5-AcePerl - Add LICENSE 2015-03-28 17:20:45 +00:00
p5-Bio-ASN1-EntrezGene biology/p5-Bio-ASN1-EntrezGene: bump PORTEPOCH 2015-04-11 15:19:03 +00:00
p5-Bio-Das
p5-Bio-Das-Lite Remove TEST dependency on p5-Test-Simple when the version in core is 2015-02-26 16:54:41 +00:00
p5-Bio-GFF3
p5-Bio-Glite
p5-Bio-Graphics Some OCD cleanups on some of the perl@ ports. 2015-03-12 23:00:02 +00:00
p5-Bio-MAGETAB Some OCD cleanups on some of the perl@ ports. 2015-03-12 23:00:02 +00:00
p5-Bio-NEXUS
p5-Bio-Phylo
p5-Bio-SCF
p5-bioperl Some OCD cleanups on some of the perl@ ports. 2015-03-12 23:00:02 +00:00
p5-bioperl-run For the new USE_GITHUB with only GH_TAGNAME set default DISTNAME to 2015-03-20 20:07:50 +00:00
paml Update biology/paml to 4.8a and unbreak. 2015-04-10 15:39:01 +00:00
phrap
phred
phylip
phyml
platon biology/platon: Upgrade from 05 MAR 2015 => 30 MAR 2015 to unbreak 2015-04-11 15:41:22 +00:00
plink
plinkseq
povchem Mark as broken unfetchable ports 2015-04-05 17:55:35 +00:00
primer3
protomol
psi88
py-biopython
pycogent
pyfasta
python-nexus
recombine
ruby-bio biology/ruby-bio: mark broken with ruby 2.2 2015-04-03 13:50:38 +00:00
samtools Update ports in the [bcd]* categories to not use GH_COMMIT. 2015-05-06 15:16:53 +00:00
seaview biology/seaview: Unbreak -- it fetches fine 2015-04-11 15:49:57 +00:00
seqan biology/segan: Limit GCC to 4.8 while waiting for update 2015-03-21 11:53:27 +00:00
seqio
seqtools biology/seqtools: 4.32 -> 4.33 2015-03-31 18:04:25 +00:00
sim4
ssaha
t_coffee Remove Authors from pkg-descr 2015-03-02 23:09:43 +00:00
tinker Update from 7.1.1 to 7.1.2. 2015-03-11 13:44:21 +00:00
treepuzzle
treeviewx
tRNAscan-SE
ugene - Update to version 1.16.1 2015-03-23 01:44:43 +00:00
velvet
wise
xmolwt
Makefile