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mirror of https://git.FreeBSD.org/ports.git synced 2024-11-23 00:43:28 +00:00
freebsd-ports/biology
Rong-En Fan 93e8068e88 - Update to 1.03
PR:		ports/106300
Submitted by:	chinsan
Approved by:	maintainer timeout (15 days)
2006-12-19 06:47:45 +00:00
..
adun - Local/Tools/Resources now global 2006-12-09 09:40:38 +00:00
ariadne Remove USE_REINPLACE from all categories starting with B 2006-05-03 23:26:35 +00:00
artemis
avida Mark as broken for i386 4.x 2006-08-10 23:02:49 +00:00
babel
belvu Distfile now checksums successfully. 2006-10-14 16:13:49 +00:00
biojava Reset whitekid@gmail.com after timeouts and no response to email. 2006-12-13 12:56:01 +00:00
blast - Update PORTREVISION to match latest release (see main web site) 2006-06-11 09:13:43 +00:00
blat
boinc-simap - Add hmmer 5.09 application 2006-10-10 11:31:42 +00:00
chemeq
clustalw
coalesce - Deprecate 2006-12-10 12:37:38 +00:00
crimap Remove USE_REINPLACE from all categories starting with B 2006-05-03 23:26:35 +00:00
distribfold USE_SIZE was obsoleted in rev. 1.484 of bsd.port.mk more than 2006-06-11 15:29:01 +00:00
dna-qc Remove USE_REINPLACE from all categories starting with B 2006-05-03 23:26:35 +00:00
dotter Unmark BROKEN, it seems to be caused by a stale distfile on ftp-master. 2006-08-03 20:28:00 +00:00
embassy For EMBOSS: 2006-03-31 09:43:21 +00:00
emboss For EMBOSS: 2006-03-31 09:43:21 +00:00
fasta Update to 21.u1.d1 (fixes fetch). 2006-05-07 13:04:20 +00:00
fasta3 - Update to 34.t26.b3 2006-10-31 09:02:04 +00:00
fastdnaml
finchtv
fluctuate - Deprecate 2006-12-10 12:37:38 +00:00
garlic Remove USE_REINPLACE from all categories starting with B 2006-05-03 23:26:35 +00:00
genpak
gff2ps - Update to 0.98d 2006-10-06 04:12:59 +00:00
gmap Add gmap 2006.04.21, a Genomic Mapping and Alignment Program for mRNA 2006-09-29 04:05:55 +00:00
gperiodic Chase the GNOME X11BASE to LOCALBASE move, and fix the build with the 2006-10-14 08:54:54 +00:00
grappa Reset dbader@ece.unm.edu due to timeouts and no response to email. 2006-12-13 13:20:20 +00:00
hmmer
jalview
kinemage - Respect X11BASE 2006-11-27 22:03:22 +00:00
L-Breeder - Use features of bsd.wx.mk, especially USE_WX 2006-12-01 07:39:02 +00:00
lagan
lamarc
libgenome - s,INSTALLS_SHLIB,USE_LDCONFIG,g 2006-08-14 10:08:25 +00:00
linux-foldingathome Folding@Home is a distributed computing project -- people from through out the 2006-08-28 22:33:45 +00:00
lsysexp - Add MASTER_SITE 2006-06-06 10:07:55 +00:00
mafft
migrate - Update to 2.1.3 2006-12-10 12:39:32 +00:00
molden Unbreak: molden has been updated on Aug 17, with the same DISTNAME. 2006-09-17 13:41:56 +00:00
mopac - Fix pkg-plist [1] 2006-07-10 05:32:58 +00:00
nab
ncbi-toolkit - Respect X11BASE 2006-12-09 07:49:55 +00:00
ortep3 Reset rmiya@cc.hirosaki-u.ac.jp who has not responded to email asking about 2006-04-05 06:13:46 +00:00
p5-AcePerl - Mark broken on amd64 < 6. We got following 2006-12-04 04:13:30 +00:00
p5-Bio-ASN1-EntrezGene
p5-Bio-Das - Update to 1.03 2006-12-19 06:47:45 +00:00
p5-Bio-Phylo - Update to 0.14 2006-12-07 15:43:27 +00:00
p5-bioperl
p5-bioperl-devel
p5-bioperl-run Bioperl-run contain modules that provides a PERL interface to various 2006-05-02 21:30:08 +00:00
p5-bioperl-run-devel Bioperl-run contain modules that provides a PERL interface to various 2006-05-02 21:31:43 +00:00
paml - Update to 3.15 2006-05-20 18:52:19 +00:00
phylip Reset dbader@ece.unm.edu due to timeouts and no response to email. 2006-12-13 13:20:20 +00:00
platon - Satisfy portlint 2006-05-06 21:20:59 +00:00
povchem Remove USE_REINPLACE from all categories starting with B 2006-05-03 23:26:35 +00:00
primer3 Remove USE_REINPLACE from all categories starting with B 2006-05-03 23:26:35 +00:00
protomol Add protomol 2.0.3, OO, component based, framework for molecular 2006-05-05 20:09:54 +00:00
psi88 Reset rmiya@cc.hirosaki-u.ac.jp who has not responded to email asking about 2006-04-05 06:13:46 +00:00
py-biopython - Update to 1.42 2006-10-31 13:25:21 +00:00
pymol Fix build on amd64 2006-09-17 11:51:56 +00:00
rasmol
recombine - Deprecate 2006-12-10 12:37:38 +00:00
ruby-bio - Update to 1.0.0 2006-04-25 22:09:29 +00:00
seaview Chase pdf library and bump PORTREVISION. 2006-10-09 08:18:35 +00:00
seqio
sim4 Remove USE_REINPLACE from all categories starting with B 2006-05-03 23:26:35 +00:00
t_coffee
tinker Remove USE_REINPLACE from all categories starting with B 2006-05-03 23:26:35 +00:00
treepuzzle
treeviewx - Allow wxWidgets 2.6 alongside 2.4, this port works with both 2006-10-09 07:16:37 +00:00
tRNAscan-SE
wise Remove USE_REINPLACE from all categories starting with B 2006-05-03 23:26:35 +00:00
xdrawchem Mark as BROKEN on sparc64 due to internal compiler error. 2006-07-03 22:22:09 +00:00
xmolwt Reset rmiya@cc.hirosaki-u.ac.jp who has not responded to email asking about 2006-04-05 06:13:46 +00:00
Makefile Adun is a new extendible molecular simulation program that also 2006-11-09 20:16:54 +00:00