| .. |
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abyss
|
One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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ad2vcf
|
One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
|
artemis
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
avida
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
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babel
|
all: Remove all other $FreeBSD keywords.
|
2021-04-06 16:31:13 +02:00 |
|
bamtools
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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bcftools
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
bedtools
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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bioawk
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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biococoa
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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biolibc
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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bioparser
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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biosoup
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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bolt-lmm
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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bowtie
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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bowtie2
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devel/onetbb: Update to 2021.2.0 and bump dependencies
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2021-04-14 12:08:05 +02:00 |
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bwa
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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canu
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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cd-hit
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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cdbfasta
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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checkm
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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clustal-omega
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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clustalw
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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cufflinks
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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cytoscape
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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ddocent
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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diamond
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biology/diamond: Update to 2.0.9
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2021-04-12 21:55:49 -03:00 |
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dsr-pdb
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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edlib
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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emboss
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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exonerate
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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fasta
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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fasta3
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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fastahack
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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fastdnaml
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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fastool
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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fastp
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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fastqc
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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fasttree
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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fastx-toolkit
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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figtree
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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fluctuate
|
Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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freebayes
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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garlic
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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gatk
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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gcta
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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gemma
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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generand
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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gff2ps
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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gmap
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
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gperiodic
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
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graphlan
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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groopm
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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haplohseq
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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hhsuite
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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hisat2
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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hmmer
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
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htslib
|
Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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hyphy
|
biology/hyphy: Update to 2.5.30
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2021-04-07 22:54:50 -03:00 |
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igv
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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infernal
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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iolib
|
Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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iqtree
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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jalview
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all: Remove all other $FreeBSD keywords.
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2021-04-06 16:31:13 +02:00 |
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jellyfish
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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kallisto
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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lamarc
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
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libbigwig
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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libgtextutils
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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libsbml
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Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
linux-foldingathome
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all: Remove all other $FreeBSD keywords.
|
2021-04-06 16:31:13 +02:00 |
|
mafft
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
mapm3
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
migrate
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
minimap2
|
biology/minimap2: Update to 2.18
|
2021-04-11 14:18:02 -05:00 |
|
molden
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
mopac
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
mothur
|
biology/mothur: Update to 1.45.2
|
2021-04-12 19:29:17 -05:00 |
|
mrbayes
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
mummer
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
muscle
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
ncbi-blast+
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
|
ncbi-cxx-toolkit
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
|
ncbi-toolkit
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
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ncbi-vdb
|
biology/ncbi-vdb: Restore static libs installed with symlinks as shared libs are usually installed
|
2021-04-12 11:03:14 -07:00 |
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ngs-sdk
|
biology/ngs-sdk: Fix build on non-amd64 architectures that was broken by explicit 'amd64' instead of $ARCH
|
2021-04-15 10:01:31 -07:00 |
|
p5-AcePerl
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
p5-Bio-ASN1-EntrezGene
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
p5-Bio-Cluster
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
p5-Bio-Coordinate
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
p5-Bio-Das
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
p5-Bio-Das-Lite
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
p5-Bio-DB-EMBL
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
p5-Bio-DB-NCBIHelper
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
p5-Bio-FeatureIO
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
p5-Bio-GFF3
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
p5-Bio-Glite
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
p5-Bio-Graphics
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
p5-Bio-MAGETAB
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
p5-Bio-NEXUS
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
p5-Bio-Phylo
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
p5-Bio-SCF
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
p5-Bio-Variation
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
p5-BioPerl
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
p5-BioPerl-Run
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
p5-transdecoder
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
p5-TrimGalore
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
paml
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
pbbam
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
pbseqan
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
pear-merger
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
phrap
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
phred
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
phyml
|
Clean up some things
|
2021-04-15 10:31:56 +02:00 |
|
picard-tools
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
plink
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
pooler
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
primer3
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
prodigal
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
prodigy-lig
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
protomol
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
psi88
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
py-bigwig
|
biology/py-bigwig: Python access to bigWig files using libBigWig
|
2021-04-12 18:24:20 -05:00 |
|
py-biom-format
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
py-biopython
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
py-bx-python
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
py-crossmap
|
biology/py-crossmap: Lift over genomics coordinates between assemblies
|
2021-04-12 18:37:51 -05:00 |
|
py-cutadapt
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
py-dnaio
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
py-ete3
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
py-Genesis-PyAPI
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
py-gffutils
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
py-gtfparse
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
py-hits
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
py-loompy
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
py-macs2
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
py-multiqc
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
py-orange3-bioinformatics
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
py-orange3-single-cell
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
py-pandas-charm
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
py-pyfaidx
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
py-pysam
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
py-scikit-bio
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
py-xenaPython
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
pyfasta
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
python-nexus
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
rainbow
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
rampler
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
recombine
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
ruby-bio
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
rubygem-bio
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
rubygem-bio-executables
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
rubygem-bio-old-biofetch-emulator
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
rubygem-bio-shell
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
samtools
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
scrm
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
seaview
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
seqan
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
seqan1
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
seqan-apps
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
seqio
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
seqkit
|
biology/seqkit: Change WWW to the project URL (from GitHub URL)
|
2021-04-16 21:00:56 -07:00 |
|
seqtk
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
sim4
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
slclust
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
smithwaterman
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
spoa
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
stacks
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
star
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
stringtie
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
subread
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
tabixpp
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
treekin
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
treepuzzle
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
trimadap
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
trimmomatic
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
tRNAscan-SE
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
ugene
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
vcf2hap
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
vcf-split
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
vcflib
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
vcftools
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
velvet
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
viennarna
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
vsearch
|
biology/vsearch: Update to 2.17.0
|
2021-04-10 09:02:55 -05:00 |
|
vt
|
One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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wise
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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Makefile
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New port: biology/seqkit: Cross-platform and ultrafast toolkit for FASTA/Q file manipulation
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2021-04-16 14:04:16 -07:00 |
