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mirror of https://git.FreeBSD.org/ports.git synced 2024-12-14 03:10:47 +00:00
freebsd-ports/biology
Wesley Shields a8dc52d3dc - Roll back to 4.6 as 4.7 is the development version and is constantly being
re-rolled.
- Move post-patch target into files/patch-xwin.c to remove sed invocation.
- Respect NOPORTDATA and DATADIR.
- Bring files/patch-aa back (to preserve history) and retire patch-makefile.
- Fixup files/patch-xwin.c so it applies cleanly to this version.
2008-11-11 02:21:28 +00:00
..
adun - update PORTSCOUT 2008-08-12 17:13:44 +00:00
ariadne
artemis
avida - Update to 2.8.1 2008-10-23 14:13:37 +00:00
babel
belvu
biococoa
biojava
blast
blat - Remove USE_GCC where it can be satisfied with base compiler on following 2008-07-25 14:34:52 +00:00
boinc-simap
chemeq
clustalw
consed
crimap
distribfold
dna-qc
dotter
embassy
emboss
fasta
fasta3
fastdnaml
finchtv
fluctuate
garlic
genpak - Remove duplicates from MAKE_ENV after inclusion of CC and CXX in default MAKE_ENV 2008-07-25 09:08:42 +00:00
gff2ps
gmap Update CONFIGURE_ARGS for how we pass CONFIGURE_TARGET to configure script. 2008-08-21 06:18:49 +00:00
gperiodic
grappa
hmmer
jalview
kinemage
L-Breeder
lagan - Remove duplicates from MAKE_ENV after inclusion of CC and CXX in default MAKE_ENV 2008-07-25 09:08:42 +00:00
lamarc - Update to 2.1.3 2008-07-31 16:18:42 +00:00
libgenome Update CONFIGURE_ARGS for how we pass CONFIGURE_TARGET to configure script. 2008-08-21 06:18:49 +00:00
linux-foldingathome
lsysexp
mafft
mapm3
migrate
molden - Roll back to 4.6 as 4.7 is the development version and is constantly being 2008-11-11 02:21:28 +00:00
mopac Add -lf2c, this is the correct dependency. Bump portrevision. 2008-08-22 22:20:05 +00:00
mrbayes
mummer
muscle
ncbi-toolkit
njplot
ortep3
p5-AcePerl Update my ports to my freebsd address 2008-07-23 02:43:55 +00:00
p5-Bio-ASN1-EntrezGene
p5-Bio-Das
p5-Bio-Phylo
p5-bioperl
p5-bioperl-devel - Unbreak 2008-10-21 15:24:46 +00:00
p5-bioperl-run
p5-bioperl-run-devel
paml - Update to 4.1 2008-09-30 08:54:55 +00:00
phd2fasta
phrap
phred
phylip - Fix build 2008-08-27 16:21:06 +00:00
platon
povchem
primer3
protomol - Remove USE_GCC where it can be satisfied with base compiler on following 2008-07-25 14:34:52 +00:00
psi88
py-biopython - Update to 1.48 2008-10-11 15:26:33 +00:00
pymol
rasmol
recombine
ruby-bio
seaview
seqio - respect NOPORTEXAMPLES/NOPORTDOCS and fix plist 2008-07-12 06:28:25 +00:00
sim4
ssaha
t_coffee - Respect PORTDOCS/PORTEXAMPLES 2008-09-09 13:43:15 +00:00
tinker
treepuzzle Update CONFIGURE_ARGS for how we pass CONFIGURE_TARGET to configure script. 2008-08-21 06:18:49 +00:00
treeviewx
tRNAscan-SE
wise
xdrawchem Update CONFIGURE_ARGS for how we pass CONFIGURE_TARGET to configure script. 2008-08-21 06:18:49 +00:00
xmolwt
Makefile - Delete biology/nab port after being marked DEPRECATED for three months 2008-07-24 12:17:12 +00:00