Gerald Pfeifer 15945f8122 Update the default version of GCC in the Ports Collection from GCC 4.7.4 ... to GCC 4.8.3. Part II, Bump PORTREVISIONs. PR: 192025 Tested by: antoine (-exp runs) Approved by: portmgr (implicit)		2014-09-10 20:50:31 +00:00
..
ariadne	Convert a bunch of EXTRACT_SUFX=... into USES=tar:...	2014-07-29 19:11:51 +00:00
artemis
avida
babel	Rename biology/ patch-xy patches to reflect the files they modify.	2014-07-28 14:22:16 +00:00
biococoa	Update the default version of GCC in the Ports Collection from GCC 4.7.4	2014-09-10 20:50:31 +00:00
biojava
blat	Put HOME in MAKE_ARGS to handle pverride of HOME in MAKE_ENV from bsd.port.mk	2014-06-25 08:55:55 +00:00
boinc-simap	Update the default version of GCC in the Ports Collection from GCC 4.7.4	2014-09-10 20:50:31 +00:00
chemeq
clustalw
consed	update ports:	2014-08-23 18:04:58 +00:00
crux	Update the default version of GCC in the Ports Collection from GCC 4.7.4	2014-09-10 20:50:31 +00:00
emboss	Remove indefinite articles and trailing periods from COMMENT, plus	2014-06-09 11:21:52 +00:00
fasta
fasta3
fastdnaml
fluctuate
garlic	biology/garlic: Stage properly to unbreak	2014-07-17 10:13:06 +00:00
gff2ps
gmap	Fix MASTER_SITES	2014-09-05 09:25:45 +00:00
gperiodic
grappa
hmmer	Add DOCS to OPTIONS_DEFINE to ports that check for PORT_OPTIONS:MDOCS.	2014-07-15 14:54:54 +00:00
iolib
jalview
lagan
lamarc
libsbml	- Update to 5.10.2	2014-08-10 06:21:53 +00:00
linux-foldingathome	Stagify.	2014-07-06 16:05:34 +00:00
mafft	Convert a bunch of EXTRACT_SUFX=... into USES=tar:...	2014-07-29 19:11:51 +00:00
mapm3
migrate
molden	Update the default version of GCC in the Ports Collection from GCC 4.7.4	2014-09-10 20:50:31 +00:00
mopac	- Switch to USES=libtool, drop .la files	2014-08-06 16:05:49 +00:00
mrbayes	Fix build on -current by un-clobbering LDFLAGS. Also, don't	2014-08-15 16:37:37 +00:00
mummer	biology/mummer: Use OPSYS with OSVERSION	2014-07-19 22:00:16 +00:00
muscle	Update to 3.8.31.	2014-06-17 21:36:06 +00:00
ncbi-toolkit
njplot
ortep3	Update the default version of GCC in the Ports Collection from GCC 4.7.4	2014-09-10 20:50:31 +00:00
p5-AcePerl	Fix build. Hopefully it doesn't break the app.	2014-08-22 00:33:16 +00:00
p5-Bio-ASN1-EntrezGene	Convert a bunch of EXTRACT_SUFX=... into USES=tar:...	2014-07-29 19:11:51 +00:00
p5-Bio-Das
p5-Bio-Das-Lite
p5-Bio-GFF3
p5-Bio-Glite
p5-Bio-Graphics	Really fix.	2014-07-25 23:08:58 +00:00
p5-Bio-MAGETAB
p5-Bio-NEXUS
p5-Bio-Phylo
p5-Bio-SCF	Remove all the bootstrap files (.bs) from the plists.	2014-06-10 12:14:12 +00:00
p5-bioperl	biology/p5-bioperl: fix pkg-descr sidenote link	2014-08-04 04:32:38 +00:00
p5-bioperl-run	biology/p5-bioperl-run: 1.6.1 -> 1.6.901, unbreak, stagify	2014-08-04 08:54:10 +00:00
paml	Convert a bunch of EXTRACT_SUFX=... into USES=tar:...	2014-07-29 19:11:51 +00:00
phrap	update ports:	2014-08-23 18:04:58 +00:00
phred	update ports:	2014-08-23 18:04:58 +00:00
phylip
phyml
platon	Update the default version of GCC in the Ports Collection from GCC 4.7.4	2014-09-10 20:50:31 +00:00
plink	Update the default version of GCC in the Ports Collection from GCC 4.7.4	2014-09-10 20:50:31 +00:00
plinkseq	- Switch to USES=libtool, drop .la files	2014-07-22 22:12:15 +00:00
povchem	Rename biology/ patch-xy patches to reflect the files they modify.	2014-07-28 14:22:16 +00:00
primer3
protomol	Update the default version of GCC in the Ports Collection from GCC 4.7.4	2014-09-10 20:50:31 +00:00
psi88	Update the default version of GCC in the Ports Collection from GCC 4.7.4	2014-09-10 20:50:31 +00:00
py-biopython	Update the default version of GCC in the Ports Collection from GCC 4.7.4	2014-09-10 20:50:31 +00:00
pycogent	Update the default version of GCC in the Ports Collection from GCC 4.7.4	2014-09-10 20:50:31 +00:00
pyfasta	Update the default version of GCC in the Ports Collection from GCC 4.7.4	2014-09-10 20:50:31 +00:00
python-nexus	Remove indefinite articles and trailing periods from COMMENT, plus	2014-06-09 11:21:52 +00:00
recombine
ruby-bio
seaview	Update the default version of GCC in the Ports Collection from GCC 4.7.4	2014-09-10 20:50:31 +00:00
seqan	Update the default version of GCC in the Ports Collection from GCC 4.7.4	2014-09-10 20:50:31 +00:00
seqio
seqtools	USES=execinfo	2014-08-04 23:06:21 +00:00
sim4
ssaha
t_coffee	Update the default version of GCC in the Ports Collection from GCC 4.7.4	2014-09-10 20:50:31 +00:00
tinker	Update the default version of GCC in the Ports Collection from GCC 4.7.4	2014-09-10 20:50:31 +00:00
treepuzzle
treeviewx	Update the default version of GCC in the Ports Collection from GCC 4.7.4	2014-09-10 20:50:31 +00:00
tRNAscan-SE	Convert a bunch of EXTRACT_SUFX=... into USES=tar:...	2014-07-29 19:11:51 +00:00
ugene	Update the default version of GCC in the Ports Collection from GCC 4.7.4	2014-09-10 20:50:31 +00:00
velvet	Convert a bunch of EXTRACT_SUFX=... into USES=tar:...	2014-07-29 19:11:51 +00:00
wise
xmolwt
Makefile	Second run at cleaning out non staged ports without pending PR	2014-09-02 12:45:01 +00:00